Strain Fitness in Sphingobium sp. HT1-2 around GFF2031

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,059,644	+		GFF2029	0.70	+0.2
2,059,654	+		GFF2029	0.71	+0.5
2,059,654	+		GFF2029	0.71	+0.5
2,059,654	+		GFF2029	0.71	-0.6
2,059,655	+		GFF2029	0.71	-1.5
2,059,662	-		GFF2029	0.71	-1.2
2,059,662	-		GFF2029	0.71	-0.2
2,059,681	+		GFF2029	0.73	-0.9
2,059,681	+		GFF2029	0.73	-0.5
2,059,681	+		GFF2029	0.73	+0.2
2,059,689	-		GFF2029	0.74	+0.8
2,059,689	-		GFF2029	0.74	-0.2
2,059,717	+		GFF2029	0.77	+0.2
2,059,732	+		GFF2029	0.78	-1.3
2,059,794	+		GFF2029	0.84	+1.7
2,059,802	+		GFF2029	0.85	-0.2
2,059,820	+		GFF2029	0.87	+0.5
2,059,820	+		GFF2029	0.87	-0.8
2,059,829	-		GFF2029	0.88	-0.3
2,059,829	-		GFF2029	0.88	+0.4
2,059,846	+		GFF2029	0.89	-0.1
2,059,846	+		GFF2029	0.89	+0.2
2,059,846	+		GFF2029	0.89	-0.7
2,059,846	+		GFF2029	0.89	+0.8
2,059,846	+		GFF2029	0.89	+0.8
2,059,846	+		GFF2029	0.89	-1.3
2,059,846	+		GFF2029	0.89	-1.9
2,059,854	-				-3.0
2,059,854	-				+0.0
2,059,863	+				-1.6
2,059,871	-				-1.0
2,059,872	+				+0.4
2,059,883	+				+0.5
2,059,885	-				-0.9
2,059,891	-				-0.5
2,059,891	-				+0.8
2,059,915	+				+0.7
2,059,915	+				-0.0
2,059,915	+				-0.4
2,059,920	+				-0.5
2,059,923	-				-0.3
2,059,923	-				+0.4
2,059,923	-				-0.4
2,059,923	-				+1.8
2,059,923	-				-0.9
2,059,923	-				+1.1
2,059,923	-				-1.8
2,059,923	-				+0.1
2,059,923	-				+0.3
2,059,923	-				+0.0
2,059,925	+				-0.0
2,059,933	-				-1.5
2,059,940	+				-0.5
2,059,959	+				-0.3
2,059,973	+				-0.4
2,059,978	+				-1.8
2,059,978	+				-0.7
2,060,024	-				+1.3
2,060,042	+				-1.5
2,060,046	+				+0.1
2,060,054	-				-0.0
2,060,060	+				+0.6
2,060,060	+				+0.3
2,060,061	+				+0.7
2,060,061	-				+0.9
2,060,065	+				+0.8
2,060,068	-				+0.2
2,060,073	-				-1.8
2,060,079	+				-0.3
2,060,079	-				-1.6
2,060,094	-				-0.6
2,060,199	+		GFF2030	0.25	-1.8
2,060,225	-		GFF2030	0.30	-2.3
2,060,250	-		GFF2030	0.35	-0.1
2,060,250	-		GFF2030	0.35	+0.4
2,060,250	-		GFF2030	0.35	+0.3
2,060,252	+		GFF2030	0.35	+0.3
2,060,260	-		GFF2030	0.37	-1.5
2,060,262	+		GFF2030	0.37	+0.1
2,060,262	+		GFF2030	0.37	+0.9
2,060,262	+		GFF2030	0.37	-0.2
2,060,262	+		GFF2030	0.37	-1.4
2,060,262	+		GFF2030	0.37	-0.8
2,060,262	+		GFF2030	0.37	+0.4
2,060,262	+		GFF2030	0.37	+0.8
2,060,262	+		GFF2030	0.37	+0.0
2,060,262	+		GFF2030	0.37	-0.1
2,060,262	+		GFF2030	0.37	-1.9
2,060,262	+		GFF2030	0.37	+1.2
2,060,262	+		GFF2030	0.37	-1.1
2,060,262	+		GFF2030	0.37	-1.2
2,060,262	+		GFF2030	0.37	-2.4
2,060,262	+		GFF2030	0.37	+0.2
2,060,262	+		GFF2030	0.37	-2.2
2,060,262	+		GFF2030	0.37	-0.3
2,060,262	+		GFF2030	0.37	-1.2
2,060,262	+		GFF2030	0.37	+0.1
2,060,262	+		GFF2030	0.37	+0.1
2,060,262	+		GFF2030	0.37	-0.6
2,060,265	-		GFF2030	0.38	-0.3
2,060,267	+		GFF2030	0.38	-1.4
2,060,267	+		GFF2030	0.38	-1.4
2,060,270	-		GFF2030	0.39	-0.8
2,060,270	-		GFF2030	0.39	-1.2
2,060,270	-		GFF2030	0.39	+0.9
2,060,270	-		GFF2030	0.39	-0.2
2,060,270	-		GFF2030	0.39	+0.3
2,060,270	-		GFF2030	0.39	-1.3
2,060,270	-		GFF2030	0.39	-1.6
2,060,270	-		GFF2030	0.39	-0.8
2,060,270	-		GFF2030	0.39	-1.4
2,060,270	-		GFF2030	0.39	+0.1
2,060,275	-		GFF2030	0.40	+0.4
2,060,275	-		GFF2030	0.40	-0.6
2,060,300	+		GFF2030	0.45	+0.8
2,060,308	-		GFF2030	0.46	-1.4
2,060,308	-		GFF2030	0.46	+0.3
2,060,317	+		GFF2030	0.48	-1.4
2,060,371	+		GFF2030	0.59	-0.5
2,060,371	+		GFF2030	0.59	+0.0
2,060,376	+		GFF2030	0.60	+0.0
2,060,379	-		GFF2030	0.60	-0.4
2,060,381	+		GFF2030	0.61	-0.4
2,060,389	-		GFF2030	0.62	-0.6
2,060,401	-		GFF2030	0.65	+1.0
2,060,405	+		GFF2030	0.65	-1.5
2,060,411	-		GFF2030	0.67	-2.0
2,060,413	+		GFF2030	0.67	-0.5
2,060,417	-		GFF2030	0.68	-0.1
2,060,421	-		GFF2030	0.69	+0.1
2,060,455	-		GFF2030	0.75	-1.6
2,060,467	-		GFF2030	0.78	+0.4
2,060,472	-		GFF2030	0.79	-0.5
2,060,472	-		GFF2030	0.79	-1.5
2,060,483	+		GFF2030	0.81	+1.4
2,060,498	+		GFF2030	0.84	+1.3
2,060,550	-				-0.8
2,060,561	+				+0.6
2,060,577	-				-0.2
2,060,590	-				+0.3
2,060,596	+				-0.7
2,060,598	+				-1.3
2,060,601	-				+0.8
2,060,604	+				-1.2
2,060,605	+				+0.9
2,060,605	+				-1.0
2,060,613	-				+0.7
2,060,613	-				+0.5
2,060,613	-				-0.2
2,060,613	-				-0.1
2,060,637	+				-2.4
2,060,637	+				-0.5
2,060,667	-				+1.2
2,060,667	-				+0.2
2,060,681	+				-0.9
2,060,681	+				-1.2
2,060,689	-				+0.5
2,060,689	-				-0.9
2,060,689	-				+1.3
2,060,689	-				+0.2
2,060,696	-				-0.9
2,060,699	+				+0.3
2,060,699	+				-0.9
2,060,699	+				+0.1
2,060,702	-				+0.3
2,060,707	-				-1.7
2,060,709	+		GFF2031	0.10	+1.1
2,060,709	+		GFF2031	0.10	-0.0
2,060,712	-		GFF2031	0.10	-0.4
2,060,715	+		GFF2031	0.11	-1.5
2,060,718	-		GFF2031	0.11	-0.5
2,060,747	-		GFF2031	0.14	+0.2
2,060,751	+		GFF2031	0.14	-0.3
2,060,764	-		GFF2031	0.15	-0.7
2,060,766	+		GFF2031	0.15	+1.6
2,060,766	+		GFF2031	0.15	+0.8
2,060,766	+		GFF2031	0.15	-1.6
2,060,766	+		GFF2031	0.15	-0.4
2,060,774	-		GFF2031	0.16	+0.6
2,060,774	-		GFF2031	0.16	+0.6
2,060,774	-		GFF2031	0.16	+0.4
2,060,774	-		GFF2031	0.16	-1.1
2,060,805	-		GFF2031	0.19	-0.8
2,060,838	-		GFF2031	0.22	+0.8
2,060,839	+		GFF2031	0.22	-0.0
2,060,839	+		GFF2031	0.22	+0.5
2,060,843	+		GFF2031	0.23	-0.9
2,060,869	+		GFF2031	0.25	-0.7
2,060,869	+		GFF2031	0.25	-1.3
2,060,869	+		GFF2031	0.25	+0.9
2,060,869	+		GFF2031	0.25	+0.4
2,060,869	+		GFF2031	0.25	+0.9
2,060,869	+		GFF2031	0.25	+1.2
2,060,869	+		GFF2031	0.25	-0.0
2,060,869	+		GFF2031	0.25	+0.6
2,060,869	+		GFF2031	0.25	+0.8
2,060,869	+		GFF2031	0.25	+0.3
2,060,869	+		GFF2031	0.25	-0.7
2,060,869	+		GFF2031	0.25	-0.9
2,060,869	+		GFF2031	0.25	-0.2
2,060,869	+		GFF2031	0.25	+0.1
2,060,869	+		GFF2031	0.25	-0.5
2,060,869	+		GFF2031	0.25	+0.4
2,060,869	+		GFF2031	0.25	+0.2
2,060,869	+		GFF2031	0.25	+0.4
2,060,869	+		GFF2031	0.25	-2.0
2,060,877	-		GFF2031	0.26	-0.4
2,060,877	-		GFF2031	0.26	-0.4
2,060,877	-		GFF2031	0.26	-0.5
2,060,877	-		GFF2031	0.26	-0.7
2,060,877	-		GFF2031	0.26	-0.1
2,060,877	-		GFF2031	0.26	-1.5
2,060,877	-		GFF2031	0.26	-0.7
2,060,877	-		GFF2031	0.26	+0.2
2,060,877	-		GFF2031	0.26	+0.4
2,060,877	-		GFF2031	0.26	+0.0
2,060,877	-		GFF2031	0.26	-1.9
2,060,877	-		GFF2031	0.26	-1.6
2,060,877	-		GFF2031	0.26	+0.3
2,060,877	-		GFF2031	0.26	+0.9
2,060,877	-		GFF2031	0.26	-0.3
2,060,877	-		GFF2031	0.26	-2.0
2,060,877	-		GFF2031	0.26	-1.3
2,060,877	-		GFF2031	0.26	-2.0
2,060,877	-		GFF2031	0.26	-1.1
2,060,877	-		GFF2031	0.26	+0.7
2,060,904	-		GFF2031	0.28	-0.5
2,060,904	-		GFF2031	0.28	-1.0
2,060,915	-		GFF2031	0.29	+0.1
2,060,917	+		GFF2031	0.30	-1.3
2,060,922	+		GFF2031	0.30	-0.4
2,060,932	+		GFF2031	0.31	-0.2
2,060,942	+		GFF2031	0.32	-0.9
2,060,942	-		GFF2031	0.32	-0.0
2,060,982	+		GFF2031	0.36	-0.4
2,061,023	+		GFF2031	0.40	+0.6
2,061,033	+		GFF2031	0.41	+0.5
2,061,043	+		GFF2031	0.42	-0.1
2,061,043	+		GFF2031	0.42	-1.3
2,061,043	+		GFF2031	0.42	-1.4
2,061,043	+		GFF2031	0.42	-0.3
2,061,043	+		GFF2031	0.42	+0.8
2,061,043	+		GFF2031	0.42	-0.8
2,061,043	+		GFF2031	0.42	-1.1
2,061,043	+		GFF2031	0.42	-2.6
2,061,043	+		GFF2031	0.42	+1.0
2,061,051	-		GFF2031	0.42	-0.5
2,061,051	-		GFF2031	0.42	-0.3
2,061,051	-		GFF2031	0.42	-0.2
2,061,051	-		GFF2031	0.42	+0.5
2,061,051	-		GFF2031	0.42	-0.5
2,061,051	-		GFF2031	0.42	-0.2
2,061,051	-		GFF2031	0.42	+1.8
2,061,051	-		GFF2031	0.42	+0.5
2,061,053	+		GFF2031	0.42	-0.1
2,061,053	+		GFF2031	0.42	-1.1
2,061,061	-		GFF2031	0.43	-2.2
2,061,061	-		GFF2031	0.43	-1.1
2,061,061	-		GFF2031	0.43	-0.5
2,061,061	-		GFF2031	0.43	-1.4
2,061,061	-		GFF2031	0.43	-1.5
2,061,106	+		GFF2031	0.47	-0.2
2,061,139	+		GFF2031	0.51	+0.2
2,061,153	+		GFF2031	0.52	-1.1
2,061,161	-		GFF2031	0.53	+0.0
2,061,175	-		GFF2031	0.54	-0.5
2,061,178	+		GFF2031	0.54	+1.1
2,061,178	+		GFF2031	0.54	+1.2
2,061,178	+		GFF2031	0.54	+0.7
2,061,186	-		GFF2031	0.55	+1.5
2,061,196	+		GFF2031	0.56	-0.1
2,061,202	+		GFF2031	0.56	-1.7
2,061,202	+		GFF2031	0.56	+0.8
2,061,202	+		GFF2031	0.56	+0.1
2,061,202	+		GFF2031	0.56	-1.0
2,061,204	-		GFF2031	0.57	-0.8
2,061,207	+		GFF2031	0.57	-0.4
2,061,207	+		GFF2031	0.57	-0.7
2,061,207	+		GFF2031	0.57	+0.1
2,061,207	+		GFF2031	0.57	-2.0
2,061,207	+		GFF2031	0.57	-0.3
2,061,207	+		GFF2031	0.57	+0.4
2,061,207	+		GFF2031	0.57	-0.6
2,061,210	-		GFF2031	0.57	-0.2
2,061,210	-		GFF2031	0.57	-0.8
2,061,210	-		GFF2031	0.57	+0.5
2,061,210	-		GFF2031	0.57	-0.7
2,061,210	-		GFF2031	0.57	-2.0
2,061,210	-		GFF2031	0.57	-0.2
2,061,210	-		GFF2031	0.57	+1.4
2,061,215	-		GFF2031	0.58	-0.9
2,061,215	-		GFF2031	0.58	+0.1
2,061,215	-		GFF2031	0.58	+0.6
2,061,215	-		GFF2031	0.58	+0.2
2,061,219	+		GFF2031	0.58	-1.6
2,061,219	+		GFF2031	0.58	-1.0
2,061,219	+		GFF2031	0.58	+0.6
2,061,243	+		GFF2031	0.60	-0.4
2,061,251	+		GFF2031	0.61	-0.6
2,061,251	+		GFF2031	0.61	+0.2
2,061,251	+		GFF2031	0.61	-0.2
2,061,253	+		GFF2031	0.61	-1.1
2,061,259	-		GFF2031	0.62	-1.0
2,061,259	-		GFF2031	0.62	+0.2
2,061,261	-		GFF2031	0.62	+1.1
2,061,261	-		GFF2031	0.62	+1.4
2,061,273	-		GFF2031	0.63	-1.5
2,061,292	+		GFF2031	0.65	-0.7
2,061,297	+		GFF2031	0.65	+0.3
2,061,297	+		GFF2031	0.65	-0.5
2,061,297	+		GFF2031	0.65	-2.0
2,061,297	+		GFF2031	0.65	-2.1
2,061,297	+		GFF2031	0.65	+0.3
2,061,297	+		GFF2031	0.65	+0.2
2,061,297	+		GFF2031	0.65	-0.0
2,061,297	+		GFF2031	0.65	-1.1
2,061,297	+		GFF2031	0.65	-0.2
2,061,300	-		GFF2031	0.66	+0.3
2,061,303	-		GFF2031	0.66	+0.8
2,061,305	-		GFF2031	0.66	-1.5
2,061,305	-		GFF2031	0.66	-0.1
2,061,305	-		GFF2031	0.66	-0.7
2,061,305	-		GFF2031	0.66	-1.2
2,061,305	-		GFF2031	0.66	-0.3
2,061,305	-		GFF2031	0.66	-1.2
2,061,305	-		GFF2031	0.66	+0.6
2,061,305	-		GFF2031	0.66	-1.8
2,061,305	-		GFF2031	0.66	-1.1
2,061,305	-		GFF2031	0.66	+0.1
2,061,305	-		GFF2031	0.66	-0.5
2,061,305	-		GFF2031	0.66	-0.6
2,061,305	-		GFF2031	0.66	-0.2
2,061,305	-		GFF2031	0.66	+0.5
2,061,305	-		GFF2031	0.66	-0.1
2,061,305	-		GFF2031	0.66	-0.4
2,061,305	-		GFF2031	0.66	-1.4
2,061,305	-		GFF2031	0.66	+0.8
2,061,305	-		GFF2031	0.66	-1.0
2,061,305	-		GFF2031	0.66	-0.3
2,061,305	-		GFF2031	0.66	-1.0
2,061,355	+		GFF2031	0.71	-2.0
2,061,363	-		GFF2031	0.72	-0.7
2,061,373	-		GFF2031	0.72	+0.1
2,061,378	-		GFF2031	0.73	-1.3
2,061,384	-		GFF2031	0.74	-0.1
2,061,394	-		GFF2031	0.74	-0.4
2,061,394	-		GFF2031	0.74	+0.4
2,061,416	-		GFF2031	0.77	+1.1
2,061,430	+		GFF2031	0.78	+0.3
2,061,430	+		GFF2031	0.78	+0.1
2,061,436	+		GFF2031	0.78	-1.5
2,061,444	-		GFF2031	0.79	-0.8
2,061,444	-		GFF2031	0.79	+0.4
2,061,488	+		GFF2031	0.83	+0.6
2,061,488	+		GFF2031	0.83	+0.6
2,061,496	-		GFF2031	0.84	-0.1
2,061,496	-		GFF2031	0.84	-0.3
2,061,496	-		GFF2031	0.84	-0.5
2,061,501	+		GFF2031	0.85	-0.7
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