Strain Fitness in Sphingobium sp. HT1-2 around GFF2006

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,026,709	-				+0.0
2,026,718	+				-1.9
2,026,721	-				-1.0
2,026,726	+				-0.8
2,026,726	+				-0.2
2,026,726	+				-0.9
2,026,726	+				-0.5
2,026,726	+				+0.2
2,026,726	+				-1.4
2,026,726	+				+0.2
2,026,726	+				-1.7
2,026,726	+				-0.6
2,026,731	+				+0.4
2,026,734	-				-1.4
2,026,734	-				-0.6
2,026,734	-				-0.5
2,026,734	-				-0.2
2,026,734	-				-1.7
2,026,734	-				-0.7
2,026,734	-				+0.6
2,026,734	-				+0.3
2,026,734	-				-2.0
2,026,734	-				-0.6
2,026,734	-				+0.7
2,026,736	+				+1.0
2,026,742	+				-1.7
2,026,747	+				+1.2
2,026,747	+				+0.0
2,026,747	+				-0.8
2,026,747	+				+1.1
2,026,747	+				-0.3
2,026,754	-		GFF2005	0.10	+0.6
2,026,754	-		GFF2005	0.10	+1.2
2,026,754	-		GFF2005	0.10	-2.4
2,026,769	-		GFF2005	0.12	+0.1
2,026,779	-		GFF2005	0.13	-0.2
2,026,796	+		GFF2005	0.15	+0.3
2,026,800	-		GFF2005	0.15	-2.7
2,026,801	+		GFF2005	0.15	+1.5
2,026,804	-		GFF2005	0.16	+0.9
2,026,804	-		GFF2005	0.16	-0.3
2,026,805	+		GFF2005	0.16	-0.1
2,026,883	+		GFF2005	0.24	+0.4
2,026,903	+		GFF2005	0.26	-0.4
2,026,974	-		GFF2005	0.34	+0.9
2,026,977	+		GFF2005	0.34	+0.1
2,027,012	+		GFF2005	0.38	-1.6
2,027,025	+		GFF2005	0.39	-0.4
2,027,053	+		GFF2005	0.42	-0.8
2,027,061	-		GFF2005	0.43	-0.3
2,027,095	+		GFF2005	0.47	-1.0
2,027,095	+		GFF2005	0.47	-0.2
2,027,095	+		GFF2005	0.47	+1.0
2,027,108	-		GFF2005	0.48	-0.8
2,027,121	-		GFF2005	0.49	-1.0
2,027,136	+		GFF2005	0.51	-0.3
2,027,142	-		GFF2005	0.52	-0.1
2,027,142	-		GFF2005	0.52	-0.7
2,027,212	-		GFF2005	0.59	-0.2
2,027,217	-		GFF2005	0.60	+0.4
2,027,217	-		GFF2005	0.60	-0.1
2,027,256	+		GFF2005	0.64	-0.6
2,027,266	+		GFF2005	0.65	+0.5
2,027,274	-		GFF2005	0.66	+0.7
2,027,338	+		GFF2005	0.72	+0.1
2,027,338	+		GFF2005	0.72	+0.4
2,027,338	+		GFF2005	0.72	+0.1
2,027,338	+		GFF2005	0.72	-2.4
2,027,338	+		GFF2005	0.72	+0.6
2,027,346	-		GFF2005	0.73	-1.4
2,027,346	-		GFF2005	0.73	-2.0
2,027,346	-		GFF2005	0.73	-0.9
2,027,346	-		GFF2005	0.73	+0.6
2,027,346	-		GFF2005	0.73	+1.6
2,027,346	-		GFF2005	0.73	+0.6
2,027,346	-		GFF2005	0.73	-1.0
2,027,383	-		GFF2005	0.77	-0.9
2,027,443	+		GFF2005	0.84	-1.2
2,027,452	+		GFF2005	0.85	-2.7
2,027,452	+		GFF2005	0.85	+0.0
2,027,452	+		GFF2005	0.85	-1.2
2,027,452	+		GFF2005	0.85	+0.0
2,027,452	+		GFF2005	0.85	-0.3
2,027,452	+		GFF2005	0.85	+0.1
2,027,460	-		GFF2005	0.85	-0.7
2,027,460	-		GFF2005	0.85	+0.1
2,027,460	-		GFF2005	0.85	+0.3
2,027,465	-		GFF2005	0.86	-0.1
2,027,465	-		GFF2005	0.86	+0.1
2,027,507	-				+0.2
2,027,512	+				+0.4
2,027,547	-				-0.2
2,027,547	-				-0.8
2,027,547	-				-1.6
2,027,547	-				+0.3
2,027,547	-				-1.5
2,027,583	-				-0.5
2,027,585	-				-2.5
2,027,595	-				-1.3
2,027,598	+				-0.4
2,027,643	-				-1.1
2,027,666	+				-0.9
2,027,666	+				+0.1
2,027,674	-				+0.2
2,027,674	-				+1.0
2,027,700	-				-1.9
2,027,704	+				-1.9
2,027,709	+				+0.1
2,027,709	+				+0.3
2,027,712	-				+0.6
2,027,712	-				-0.5
2,027,712	-				-1.4
2,027,712	-				+0.2
2,027,717	-				+0.5
2,027,727	+				+0.5
2,027,743	+				-0.1
2,027,756	-				+0.4
2,027,756	-				-0.0
2,027,760	+				+0.7
2,027,760	+				-0.1
2,027,760	+				-0.4
2,027,768	-				+0.3
2,027,768	-				+1.0
2,027,791	+		GFF2006	0.10	-0.4
2,027,830	+		GFF2006	0.14	+0.4
2,027,840	+		GFF2006	0.16	-0.7
2,027,869	+		GFF2006	0.19	+1.0
2,027,869	+		GFF2006	0.19	+0.9
2,027,872	-		GFF2006	0.19	+0.3
2,027,872	-		GFF2006	0.19	-1.4
2,027,877	-		GFF2006	0.19	+0.8
2,027,882	-		GFF2006	0.20	-0.2
2,027,882	-		GFF2006	0.20	-1.9
2,027,900	-		GFF2006	0.22	-1.0
2,027,939	-		GFF2006	0.26	+0.6
2,027,946	-		GFF2006	0.27	+0.0
2,027,989	+		GFF2006	0.31	-0.6
2,028,014	-		GFF2006	0.34	-0.5
2,028,074	-		GFF2006	0.40	+0.1
2,028,100	+		GFF2006	0.43	-0.9
2,028,103	-		GFF2006	0.44	+1.2
2,028,108	-		GFF2006	0.44	-0.8
2,028,210	-		GFF2006	0.55	+1.1
2,028,210	-		GFF2006	0.55	-1.1
2,028,516	+		GFF2006	0.88	-1.8
2,028,539	-				-1.9
2,028,639	-				-2.7
2,028,665	-				-1.3
2,028,686	-				-0.6
2,028,686	-				+0.0
2,028,691	-				-0.5
2,028,691	-				-0.4
2,028,713	-				-0.4
2,028,715	+				-2.4
2,028,715	+				-0.7
2,028,720	+				-1.5
2,028,728	-				+0.6
2,028,738	-				-3.2
2,028,746	-				-2.2
2,028,746	-				-1.9
2,028,751	-				-1.8
2,028,751	-				-2.8
2,028,776	+				-1.5
2,028,776	+				-1.0
2,028,776	+				-2.2
2,028,784	-				-2.3
2,028,791	+				-1.5
2,028,822	+				-1.4
2,028,827	+				-3.4
2,028,829	+				-0.9
2,028,830	-				-1.8
2,028,834	+				-2.6
2,028,834	+				-2.2
2,028,834	+				-1.4
2,028,835	-				-3.3
2,028,846	-				-1.1
2,028,849	+				-2.0
2,028,875	+				-2.5
2,028,880	+				-1.7
2,028,880	+				-1.6
2,028,880	+				-3.0
2,028,880	+				-2.0
2,028,880	+				-1.9
2,028,881	+				-2.8
2,028,888	-				-1.2
2,028,888	-				-2.7
2,028,904	+				-3.5
2,028,912	-				-2.2
2,028,912	-				-1.2
2,028,923	-				-2.4
2,028,958	-		GFF2007	0.11	-2.8
2,028,965	+		GFF2007	0.11	-3.2
2,028,965	+		GFF2007	0.11	-0.4
2,028,965	+		GFF2007	0.11	-1.6
2,028,973	-		GFF2007	0.12	-1.4
2,028,973	-		GFF2007	0.12	-2.1
2,028,973	-		GFF2007	0.12	-2.9
2,028,983	-		GFF2007	0.12	-2.2
2,029,003	+		GFF2007	0.13	-1.2
2,029,014	+		GFF2007	0.14	-2.5
2,029,015	-		GFF2007	0.14	-2.7
2,029,020	+		GFF2007	0.14	-1.9
2,029,031	+		GFF2007	0.14	-2.2
2,029,038	-		GFF2007	0.15	-1.9
2,029,038	-		GFF2007	0.15	-2.5
2,029,038	-		GFF2007	0.15	-3.1
2,029,047	-		GFF2007	0.15	-2.3
2,029,054	-		GFF2007	0.15	-2.0
2,029,074	-		GFF2007	0.16	-0.8
2,029,074	-		GFF2007	0.16	-0.4
2,029,107	+		GFF2007	0.18	-2.0
2,029,112	+		GFF2007	0.18	-3.1
2,029,125	+		GFF2007	0.18	-2.8
2,029,125	+		GFF2007	0.18	-4.6
2,029,125	+		GFF2007	0.18	-1.5
2,029,126	+		GFF2007	0.18	-2.1
2,029,126	-		GFF2007	0.18	-2.2
2,029,126	-		GFF2007	0.18	-2.4
2,029,126	-		GFF2007	0.18	-1.2
2,029,126	-		GFF2007	0.18	-1.6
2,029,126	-		GFF2007	0.18	-3.2
2,029,133	-		GFF2007	0.19	-1.2
2,029,145	+		GFF2007	0.19	-3.6
2,029,153	-		GFF2007	0.20	-3.2
2,029,163	-		GFF2007	0.20	-0.3
2,029,166	-		GFF2007	0.20	-1.4
2,029,166	-		GFF2007	0.20	-2.8
2,029,182	+		GFF2007	0.21	+0.4
2,029,188	-		GFF2007	0.21	-3.0
2,029,190	-		GFF2007	0.21	-1.7
2,029,215	+		GFF2007	0.22	-3.3
2,029,215	+		GFF2007	0.22	-2.2
2,029,215	+		GFF2007	0.22	-1.9
2,029,215	+		GFF2007	0.22	-2.2
2,029,223	-		GFF2007	0.23	-1.6
2,029,223	-		GFF2007	0.23	-1.4
2,029,223	-		GFF2007	0.23	-3.3
2,029,225	+		GFF2007	0.23	-2.3
2,029,227	-		GFF2007	0.23	-2.7
2,029,236	+		GFF2007	0.23	-2.1
2,029,250	+		GFF2007	0.24	-1.9
2,029,260	-		GFF2007	0.24	-2.9
2,029,277	+		GFF2007	0.25	-1.3
2,029,277	+		GFF2007	0.25	-1.7
2,029,277	+		GFF2007	0.25	-1.1
2,029,277	+		GFF2007	0.25	-2.4
2,029,277	+		GFF2007	0.25	-3.1
2,029,285	-		GFF2007	0.25	-2.4
2,029,285	-		GFF2007	0.25	-2.2
2,029,285	-		GFF2007	0.25	-2.8
2,029,285	-		GFF2007	0.25	-1.7
2,029,285	-		GFF2007	0.25	-0.9
2,029,307	-		GFF2007	0.26	-0.9
2,029,323	+		GFF2007	0.27	-1.4
2,029,323	+		GFF2007	0.27	-2.2
2,029,323	+		GFF2007	0.27	-1.2
2,029,323	+		GFF2007	0.27	-3.5
2,029,324	-		GFF2007	0.27	-2.4
2,029,328	+		GFF2007	0.27	-1.8
2,029,331	-		GFF2007	0.27	-1.4
2,029,336	-		GFF2007	0.28	-2.0
2,029,343	+		GFF2007	0.28	-1.5
2,029,351	-		GFF2007	0.28	-1.6
2,029,351	-		GFF2007	0.28	-3.5
2,029,351	-		GFF2007	0.28	-2.1
2,029,351	-		GFF2007	0.28	-1.4
2,029,351	-		GFF2007	0.28	-3.0
2,029,380	+		GFF2007	0.30	-2.4
2,029,388	-		GFF2007	0.30	-3.4
2,029,393	-		GFF2007	0.30	-2.0
2,029,408	-		GFF2007	0.31	-2.4
2,029,413	+		GFF2007	0.31	-2.8
2,029,413	+		GFF2007	0.31	-4.5
2,029,413	+		GFF2007	0.31	-2.1
2,029,413	+		GFF2007	0.31	-1.9
2,029,413	+		GFF2007	0.31	-2.4
2,029,413	+		GFF2007	0.31	-1.9
2,029,413	+		GFF2007	0.31	-1.5
2,029,413	+		GFF2007	0.31	-1.6
2,029,413	+		GFF2007	0.31	-3.0
2,029,413	+		GFF2007	0.31	-2.7
2,029,413	+		GFF2007	0.31	-2.6
2,029,418	+		GFF2007	0.31	-1.9
2,029,418	+		GFF2007	0.31	-2.2
2,029,418	+		GFF2007	0.31	-1.2
2,029,421	-		GFF2007	0.31	-2.5
2,029,421	-		GFF2007	0.31	-3.0
2,029,421	-		GFF2007	0.31	-1.5
2,029,421	-		GFF2007	0.31	-2.2
2,029,421	-		GFF2007	0.31	-2.2
2,029,421	-		GFF2007	0.31	-3.6
2,029,421	-		GFF2007	0.31	-2.0
2,029,421	-		GFF2007	0.31	-3.3
2,029,426	-		GFF2007	0.32	-2.1
2,029,426	-		GFF2007	0.32	-2.8
2,029,426	-		GFF2007	0.32	-2.4
2,029,441	+		GFF2007	0.32	-2.8
2,029,449	-		GFF2007	0.33	-2.4
2,029,484	+		GFF2007	0.34	-2.3
2,029,489	-		GFF2007	0.34	-1.4
2,029,491	+		GFF2007	0.34	-2.4
2,029,491	+		GFF2007	0.34	-1.9
2,029,491	+		GFF2007	0.34	-2.0
2,029,494	+		GFF2007	0.35	-3.3
2,029,499	-		GFF2007	0.35	-1.6
2,029,499	-		GFF2007	0.35	-3.1
2,029,526	-		GFF2007	0.36	-2.5
2,029,544	+		GFF2007	0.37	-1.5
2,029,557	+		GFF2007	0.37	-1.5
2,029,557	+		GFF2007	0.37	-0.8
2,029,562	+		GFF2007	0.38	-1.2
2,029,565	-		GFF2007	0.38	-2.5
2,029,565	-		GFF2007	0.38	-1.3
2,029,565	-		GFF2007	0.38	-1.4
2,029,567	+		GFF2007	0.38	-2.2
2,029,587	+		GFF2007	0.39	-1.2
2,029,587	+		GFF2007	0.39	-3.2
2,029,593	+		GFF2007	0.39	-2.9
2,029,595	-		GFF2007	0.39	-1.2
2,029,608	+		GFF2007	0.40	-2.9
2,029,608	+		GFF2007	0.40	-2.1
2,029,616	-		GFF2007	0.40	-3.7
2,029,616	-		GFF2007	0.40	-2.9
2,029,618	+		GFF2007	0.40	-2.2
2,029,618	+		GFF2007	0.40	-3.5
2,029,618	+		GFF2007	0.40	-1.7
2,029,618	+		GFF2007	0.40	-2.1
2,029,626	-		GFF2007	0.40	-1.2
2,029,626	-		GFF2007	0.40	-1.8