Strain Fitness in Sphingobium sp. HT1-2 around GFF1931

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,953,893	-				-2.3
1,953,901	-				+1.4
1,953,903	+				+0.5
1,953,903	+				-2.1
1,953,911	+				-0.6
1,953,947	+		GFF1930	0.10	-0.4
1,953,952	+		GFF1930	0.11	-0.9
1,953,952	+		GFF1930	0.11	-1.0
1,953,952	+		GFF1930	0.11	-0.3
1,953,955	-		GFF1930	0.11	-0.4
1,953,960	-		GFF1930	0.11	-0.8
1,953,960	-		GFF1930	0.11	+0.3
1,953,960	-		GFF1930	0.11	+0.3
1,953,984	+		GFF1930	0.14	+1.3
1,953,992	-		GFF1930	0.15	-1.2
1,954,002	+		GFF1930	0.16	-0.2
1,954,002	+		GFF1930	0.16	+0.7
1,954,003	+		GFF1930	0.16	-0.8
1,954,010	-		GFF1930	0.16	-0.2
1,954,010	-		GFF1930	0.16	+0.8
1,954,021	+		GFF1930	0.18	+0.6
1,954,021	+		GFF1930	0.18	+0.3
1,954,026	+		GFF1930	0.18	-2.2
1,954,026	+		GFF1930	0.18	-0.5
1,954,026	+		GFF1930	0.18	+0.8
1,954,027	+		GFF1930	0.18	-1.6
1,954,029	-		GFF1930	0.18	-1.4
1,954,034	-		GFF1930	0.19	-0.1
1,954,034	-		GFF1930	0.19	-1.6
1,954,034	-		GFF1930	0.19	+0.5
1,954,046	+		GFF1930	0.20	-0.7
1,954,053	+		GFF1930	0.21	+1.4
1,954,063	+		GFF1930	0.22	+0.7
1,954,071	+		GFF1930	0.22	-1.6
1,954,079	-		GFF1930	0.23	-1.5
1,954,102	+		GFF1930	0.26	-1.3
1,954,140	-		GFF1930	0.29	+0.3
1,954,149	+		GFF1930	0.30	-1.0
1,954,149	+		GFF1930	0.30	+0.4
1,954,151	+		GFF1930	0.30	-1.5
1,954,164	-		GFF1930	0.32	-0.1
1,954,169	-		GFF1930	0.32	-0.4
1,954,174	-		GFF1930	0.33	-0.0
1,954,204	+		GFF1930	0.36	+1.5
1,954,212	-		GFF1930	0.36	-1.2
1,954,217	-		GFF1930	0.37	-0.6
1,954,217	-		GFF1930	0.37	-1.8
1,954,244	+		GFF1930	0.40	-0.2
1,954,249	+		GFF1930	0.40	+0.6
1,954,251	+		GFF1930	0.40	-0.6
1,954,259	-		GFF1930	0.41	+0.4
1,954,259	-		GFF1930	0.41	+0.0
1,954,264	-		GFF1930	0.42	-1.8
1,954,271	-		GFF1930	0.42	+0.2
1,954,287	+		GFF1930	0.44	-0.9
1,954,293	+		GFF1930	0.44	+0.3
1,954,293	+		GFF1930	0.44	-0.9
1,954,295	-		GFF1930	0.45	-1.2
1,954,297	-		GFF1930	0.45	+0.3
1,954,300	+		GFF1930	0.45	-1.0
1,954,300	+		GFF1930	0.45	-0.9
1,954,300	+		GFF1930	0.45	-0.7
1,954,302	+		GFF1930	0.45	+1.3
1,954,308	-		GFF1930	0.46	-2.3
1,954,308	-		GFF1930	0.46	-0.3
1,954,318	+		GFF1930	0.47	+0.5
1,954,318	+		GFF1930	0.47	-0.3
1,954,326	-		GFF1930	0.48	+0.4
1,954,326	-		GFF1930	0.48	-0.6
1,954,364	+		GFF1930	0.51	-2.4
1,954,372	-		GFF1930	0.52	-1.9
1,954,398	+		GFF1930	0.55	+0.6
1,954,406	-		GFF1930	0.56	-1.2
1,954,445	+		GFF1930	0.59	+1.3
1,954,445	+		GFF1930	0.59	-0.7
1,954,445	+		GFF1930	0.59	-0.4
1,954,453	+		GFF1930	0.60	+0.3
1,954,453	-		GFF1930	0.60	-0.3
1,954,453	-		GFF1930	0.60	-0.3
1,954,453	-		GFF1930	0.60	-1.6
1,954,453	-		GFF1930	0.60	-0.6
1,954,453	-		GFF1930	0.60	+0.9
1,954,459	-		GFF1930	0.61	+0.5
1,954,484	+		GFF1930	0.63	+0.9
1,954,484	-		GFF1930	0.63	+0.1
1,954,511	+		GFF1930	0.66	-1.4
1,954,512	+		GFF1930	0.66	+0.7
1,954,513	-		GFF1930	0.66	-1.3
1,954,513	-		GFF1930	0.66	-0.2
1,954,549	+		GFF1930	0.70	-1.7
1,954,554	+		GFF1930	0.70	-0.1
1,954,557	-		GFF1930	0.71	-0.2
1,954,557	-		GFF1930	0.71	-0.6
1,954,562	-		GFF1930	0.71	+1.3
1,954,564	-		GFF1930	0.71	-0.1
1,954,575	+		GFF1930	0.72	-1.9
1,954,585	-		GFF1930	0.73	+0.6
1,954,588	+		GFF1930	0.74	+1.3
1,954,588	+		GFF1930	0.74	-2.4
1,954,602	-		GFF1930	0.75	+0.3
1,954,619	-		GFF1930	0.77	-1.9
1,954,621	-		GFF1930	0.77	-2.0
1,954,621	-		GFF1930	0.77	-1.6
1,954,642	-		GFF1930	0.79	+0.2
1,954,647	-		GFF1930	0.79	-1.9
1,954,653	+		GFF1930	0.80	+0.4
1,954,653	+		GFF1930	0.80	-1.7
1,954,653	+		GFF1930	0.80	-0.1
1,954,653	+		GFF1930	0.80	-2.3
1,954,653	+		GFF1930	0.80	+0.4
1,954,653	+		GFF1930	0.80	+0.4
1,954,653	+		GFF1930	0.80	+1.4
1,954,659	-		GFF1930	0.81	+0.2
1,954,661	-		GFF1930	0.81	-0.7
1,954,668	+		GFF1930	0.82	+0.3
1,954,668	+		GFF1930	0.82	-0.2
1,954,668	+		GFF1930	0.82	+0.5
1,954,678	+		GFF1930	0.82	+0.3
1,954,688	-		GFF1930	0.83	-0.0
1,954,700	+		GFF1930	0.85	-0.7
1,954,702	+		GFF1930	0.85	+1.3
1,954,702	+		GFF1930	0.85	-1.1
1,954,702	+		GFF1930	0.85	-0.5
1,954,702	+		GFF1930	0.85	-0.6
1,954,708	-		GFF1930	0.85	-1.1
1,954,710	-		GFF1930	0.86	+0.3
1,954,710	-		GFF1930	0.86	+2.4
1,954,710	-		GFF1930	0.86	+1.7
1,954,710	-		GFF1930	0.86	-0.2
1,954,710	-		GFF1930	0.86	-1.3
1,954,710	-		GFF1930	0.86	-0.1
1,954,710	-		GFF1930	0.86	-0.8
1,954,715	-		GFF1930	0.86	-1.6
1,954,750	+		GFF1930	0.90	-0.4
1,954,770	-				+0.2
1,954,785	+				-0.5
1,954,785	+				+1.0
1,954,847	-				-1.4
1,954,847	-				+0.4
1,954,863	+				-1.1
1,954,871	+				-2.1
1,954,880	-				-1.6
1,954,880	-				-2.0
1,954,882	+				-0.7
1,954,885	-				-0.8
1,954,943	-				+0.5
1,954,943	-				+0.1
1,954,945	+		GFF1931	0.10	+1.1
1,954,952	+		GFF1931	0.11	-0.4
1,954,962	+		GFF1931	0.13	-0.0
1,954,970	-		GFF1931	0.14	+0.5
1,954,970	-		GFF1931	0.14	-0.1
1,954,970	-		GFF1931	0.14	+1.1
1,954,987	+		GFF1931	0.16	+1.0
1,954,987	+		GFF1931	0.16	-1.4
1,954,995	-		GFF1931	0.17	-2.3
1,954,995	-		GFF1931	0.17	+0.0
1,955,053	+		GFF1931	0.26	-1.1
1,955,102	-		GFF1931	0.33	-1.6
1,955,122	-		GFF1931	0.35	-0.4
1,955,123	+		GFF1931	0.36	+0.3
1,955,142	+		GFF1931	0.38	+0.7
1,955,142	+		GFF1931	0.38	-2.3
1,955,142	+		GFF1931	0.38	-0.4
1,955,142	+		GFF1931	0.38	-0.2
1,955,150	-		GFF1931	0.39	+0.5
1,955,150	-		GFF1931	0.39	-3.0
1,955,150	-		GFF1931	0.39	+1.6
1,955,150	-		GFF1931	0.39	-1.2
1,955,150	-		GFF1931	0.39	+1.0
1,955,159	+		GFF1931	0.41	-1.0
1,955,186	+		GFF1931	0.45	+0.1
1,955,204	-		GFF1931	0.47	-0.2
1,955,222	+		GFF1931	0.50	+1.3
1,955,224	-		GFF1931	0.50	+0.1
1,955,225	-		GFF1931	0.50	+1.1
1,955,232	+		GFF1931	0.51	+1.0
1,955,239	+		GFF1931	0.52	-0.2
1,955,239	+		GFF1931	0.52	+0.7
1,955,247	-		GFF1931	0.53	+0.6
1,955,247	-		GFF1931	0.53	+0.1
1,955,247	-		GFF1931	0.53	+0.4
1,955,255	-		GFF1931	0.54	-0.3
1,955,261	+		GFF1931	0.55	-1.5
1,955,261	+		GFF1931	0.55	+0.9
1,955,261	+		GFF1931	0.55	-0.7
1,955,269	-		GFF1931	0.56	-1.2
1,955,269	-		GFF1931	0.56	+0.7
1,955,269	-		GFF1931	0.56	-0.8
1,955,288	-		GFF1931	0.59	+0.0
1,955,310	-		GFF1931	0.62	-1.9
1,955,313	+		GFF1931	0.63	-0.4
1,955,315	-		GFF1931	0.63	-0.4
1,955,354	+		GFF1931	0.69	-0.9
1,955,367	-		GFF1931	0.70	+1.1
1,955,380	+		GFF1931	0.72	-1.3
1,955,381	+		GFF1931	0.72	+1.2
1,955,385	-		GFF1931	0.73	-0.1
1,955,389	-		GFF1931	0.74	-1.2
1,955,391	+		GFF1931	0.74	-0.1
1,955,399	-		GFF1931	0.75	+0.3
1,955,417	+		GFF1931	0.77	+0.8
1,955,430	+		GFF1931	0.79	-0.0
1,955,430	+		GFF1931	0.79	+0.3
1,955,430	+		GFF1931	0.79	+0.8
1,955,430	+		GFF1931	0.79	-0.7
1,955,438	-		GFF1931	0.80	+0.0
1,955,438	-		GFF1931	0.80	-0.9
1,955,453	-		GFF1931	0.83	+1.2
1,955,460	+		GFF1931	0.84	-0.6
1,955,470	+		GFF1931	0.85	-0.2
1,955,475	+		GFF1931	0.86	+0.2
1,955,478	-		GFF1931	0.86	-0.8
1,955,478	-		GFF1931	0.86	+0.5
1,955,499	-		GFF1931	0.89	+0.0
1,955,514	+				+0.3
1,955,514	+				+0.1
1,955,514	+				-2.7
1,955,514	+				-2.3
1,955,514	+				+0.1
1,955,514	+				+0.4
1,955,514	+				-0.3
1,955,514	+				-1.7
1,955,522	-				-2.0
1,955,522	-				+0.1
1,955,522	-				-0.7
1,955,522	-				+0.9
1,955,522	-				+0.5
1,955,523	+				+1.4
1,955,526	-				+0.9
1,955,534	+				-1.3
1,955,601	-				-1.7
1,955,601	-				-1.7
1,955,608	+				-0.6
1,955,647	+				+0.8
1,955,650	+				-0.9
1,955,662	-				-1.7
1,955,675	+				+0.9
1,955,675	+				-0.3
1,955,675	+				+1.1
1,955,675	+				-2.1
1,955,683	-				+0.1
1,955,683	-				+0.3
1,955,683	-				+0.6
1,955,692	+				-0.4
1,955,693	+				+0.4
1,955,693	+				+1.1
1,955,693	+				-0.7
1,955,701	-				+1.0
1,955,701	-				+0.8
1,955,729	+				-0.5
1,955,737	-				-0.3
1,955,745	-				-1.3
1,955,750	-				-0.2
1,955,751	+				-1.3
1,955,756	+				+1.1
1,955,761	+				-0.4
1,955,761	+				+0.5
1,955,761	+				+0.0
1,955,764	-				-0.7
1,955,764	-				-0.6
1,955,769	-				+0.3
1,955,785	+				+0.8
1,955,794	+				+0.8
1,955,806	-				-0.1
1,955,814	-				+0.0
1,955,825	+				+0.3
1,955,825	+				-2.3
1,955,825	+				-0.7
1,955,825	+				-2.1
1,955,825	+				+0.3
1,955,827	-				-0.7
1,955,827	-				-0.8
1,955,833	-				-2.1
1,955,833	-				+1.1
1,955,833	-				+0.0
1,955,833	-				-1.4
1,955,852	+				-1.0
1,955,853	+				+1.9
1,955,854	+				-0.8
1,955,863	+				-0.8
1,955,863	+				-0.7
1,955,864	+				-1.6
1,955,864	+				-1.4
1,955,864	+				-1.4
1,955,864	+				+0.0
1,955,871	-				+1.1
1,955,872	-				+0.9
1,955,872	-				-0.3
1,955,872	-				-1.2
1,955,872	-				+0.0
1,955,872	-				+0.5
1,955,872	-				-0.7
1,955,872	-				-0.6
1,955,872	-				+2.1
1,955,876	+				-0.4
1,955,905	+				-0.2
1,955,907	+				-0.4
1,955,908	-				+1.1
1,955,931	+		GFF1932	0.10	-1.7
1,955,939	+		GFF1932	0.11	-0.4
1,955,949	+		GFF1932	0.11	+0.1
1,955,950	-		GFF1932	0.11	-0.4
1,955,963	-		GFF1932	0.12	+0.7
1,955,988	+		GFF1932	0.13	+0.1
1,955,988	+		GFF1932	0.13	-1.2
1,956,074	+		GFF1932	0.16	-0.7
1,956,077	-		GFF1932	0.17	+1.1
1,956,079	+		GFF1932	0.17	+1.3
1,956,084	+		GFF1932	0.17	-1.3
1,956,084	+		GFF1932	0.17	-0.7
1,956,087	-		GFF1932	0.17	+0.8
1,956,109	+		GFF1932	0.18	+0.4
1,956,119	-		GFF1932	0.18	-0.4
1,956,122	+		GFF1932	0.19	+0.0
1,956,122	+		GFF1932	0.19	-0.3
1,956,122	+		GFF1932	0.19	-1.9
1,956,132	+		GFF1932	0.19	-0.4
1,956,140	-		GFF1932	0.19	-0.7
1,956,158	+		GFF1932	0.20	-0.3
1,956,173	+		GFF1932	0.21	+0.0
1,956,176	+		GFF1932	0.21	-0.9
1,956,183	+		GFF1932	0.21	+0.6
1,956,188	+		GFF1932	0.21	+0.7
1,956,207	-		GFF1932	0.22	+1.0
1,956,207	-		GFF1932	0.22	-0.4
1,956,220	+		GFF1932	0.23	+0.1
1,956,237	-		GFF1932	0.23	-0.4
1,956,308	-		GFF1932	0.27	-0.7
1,956,317	+		GFF1932	0.27	-0.6
1,956,371	+		GFF1932	0.29	-0.1
1,956,399	-		GFF1932	0.30	-0.4
1,956,415	+		GFF1932	0.31	+0.1
1,956,415	+		GFF1932	0.31	-2.1
1,956,418	-		GFF1932	0.31	+0.5
1,956,418	-		GFF1932	0.31	-0.4
1,956,422	+		GFF1932	0.31	-0.3
1,956,423	-		GFF1932	0.31	+0.5
1,956,423	-		GFF1932	0.31	-2.0
1,956,430	-		GFF1932	0.32	-0.6
1,956,444	+		GFF1932	0.32	-0.6
1,956,452	-		GFF1932	0.33	-1.3
1,956,452	-		GFF1932	0.33	+0.1
1,956,457	+		GFF1932	0.33	-1.2
1,956,516	-		GFF1932	0.35	-0.0
1,956,531	-		GFF1932	0.36	-1.2
1,956,536	-		GFF1932	0.36	-0.7