Strain Fitness in Sphingobium sp. HT1-2 around GFF1908

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,930,154	+				+0.9
1,930,154	+				+1.4
1,930,154	+				-0.5
1,930,154	+				-0.4
1,930,154	+				-0.1
1,930,154	+				+0.3
1,930,154	+				-0.5
1,930,154	+				-0.7
1,930,154	+				-0.5
1,930,154	+				-0.2
1,930,154	+				-1.2
1,930,154	+				+1.0
1,930,154	+				-0.0
1,930,154	+				-0.2
1,930,154	+				+0.1
1,930,159	+				-2.1
1,930,162	-				-0.1
1,930,162	-				+0.5
1,930,162	-				+0.4
1,930,162	-				+0.0
1,930,162	-				-1.1
1,930,162	-				-0.7
1,930,162	-				-0.8
1,930,162	-				+1.2
1,930,162	-				-1.2
1,930,162	-				-2.1
1,930,162	-				+0.8
1,930,162	-				-0.3
1,930,162	-				+0.5
1,930,162	-				+0.3
1,930,162	-				-2.3
1,930,167	-				-0.4
1,930,169	+				-2.1
1,930,176	+				-1.2
1,930,177	-				-0.7
1,930,184	-				-0.5
1,930,194	+				-1.6
1,930,194	+				+0.2
1,930,195	-				-0.6
1,930,195	-				-1.9
1,930,197	-				-0.3
1,930,198	-				-0.5
1,930,199	+				+0.3
1,930,199	+				-1.4
1,930,204	+				-1.6
1,930,207	-				-0.2
1,930,251	-		GFF1907	0.10	+0.5
1,930,260	+		GFF1907	0.11	+0.0
1,930,260	+		GFF1907	0.11	+0.3
1,930,264	+		GFF1907	0.12	+0.6
1,930,268	-		GFF1907	0.12	-2.8
1,930,272	-		GFF1907	0.13	+0.9
1,930,272	-		GFF1907	0.13	+0.8
1,930,277	+		GFF1907	0.13	-0.4
1,930,287	-		GFF1907	0.14	+1.1
1,930,287	-		GFF1907	0.14	-0.1
1,930,297	+		GFF1907	0.16	-1.3
1,930,297	+		GFF1907	0.16	+1.0
1,930,305	-		GFF1907	0.16	-1.1
1,930,312	+		GFF1907	0.17	+0.5
1,930,318	+		GFF1907	0.18	+0.7
1,930,325	+		GFF1907	0.19	-0.3
1,930,325	+		GFF1907	0.19	-0.4
1,930,333	-		GFF1907	0.19	-1.2
1,930,358	-		GFF1907	0.22	+0.8
1,930,368	-		GFF1907	0.23	+0.9
1,930,374	+		GFF1907	0.24	+1.4
1,930,382	-		GFF1907	0.25	-1.4
1,930,382	-		GFF1907	0.25	+0.4
1,930,388	+		GFF1907	0.26	+0.1
1,930,389	+		GFF1907	0.26	+0.3
1,930,389	+		GFF1907	0.26	+1.9
1,930,389	+		GFF1907	0.26	+1.1
1,930,389	+		GFF1907	0.26	-2.1
1,930,389	+		GFF1907	0.26	+0.8
1,930,389	+		GFF1907	0.26	-1.4
1,930,391	-		GFF1907	0.26	+0.3
1,930,397	-		GFF1907	0.27	-0.6
1,930,397	-		GFF1907	0.27	+1.6
1,930,397	-		GFF1907	0.27	-0.2
1,930,397	-		GFF1907	0.27	-1.2
1,930,405	+		GFF1907	0.27	-0.8
1,930,407	+		GFF1907	0.28	-0.5
1,930,407	+		GFF1907	0.28	-0.1
1,930,415	-		GFF1907	0.29	-1.7
1,930,430	-		GFF1907	0.30	-0.2
1,930,440	+		GFF1907	0.31	-2.0
1,930,448	-		GFF1907	0.32	+0.8
1,930,456	+		GFF1907	0.33	-0.1
1,930,481	+		GFF1907	0.36	-1.0
1,930,486	+		GFF1907	0.36	+1.0
1,930,510	+		GFF1907	0.39	-0.6
1,930,510	+		GFF1907	0.39	-1.5
1,930,510	+		GFF1907	0.39	-1.0
1,930,525	+		GFF1907	0.41	-0.1
1,930,536	+		GFF1907	0.42	+0.4
1,930,549	-		GFF1907	0.43	-0.3
1,930,601	+		GFF1907	0.49	-0.0
1,930,601	+		GFF1907	0.49	+0.7
1,930,605	+		GFF1907	0.50	-1.2
1,930,605	+		GFF1907	0.50	-0.8
1,930,610	+		GFF1907	0.50	-1.3
1,930,610	+		GFF1907	0.50	+1.1
1,930,611	+		GFF1907	0.50	+0.9
1,930,615	+		GFF1907	0.51	+0.2
1,930,619	-		GFF1907	0.51	+1.1
1,930,643	+		GFF1907	0.54	-0.4
1,930,643	+		GFF1907	0.54	+0.0
1,930,648	+		GFF1907	0.54	-0.7
1,930,656	-		GFF1907	0.55	-0.3
1,930,656	-		GFF1907	0.55	-0.6
1,930,665	+		GFF1907	0.56	-0.3
1,930,673	-		GFF1907	0.57	+1.3
1,930,673	-		GFF1907	0.57	-2.1
1,930,694	+		GFF1907	0.59	+0.0
1,930,699	+		GFF1907	0.60	-0.2
1,930,702	-		GFF1907	0.60	-1.6
1,930,718	+		GFF1907	0.62	+1.6
1,930,718	+		GFF1907	0.62	+1.3
1,930,718	+		GFF1907	0.62	-1.1
1,930,723	+		GFF1907	0.63	-0.1
1,930,726	-		GFF1907	0.63	+0.8
1,930,741	+		GFF1907	0.65	+0.2
1,930,752	+		GFF1907	0.66	+1.0
1,930,752	+		GFF1907	0.66	-0.1
1,930,755	+		GFF1907	0.66	-0.0
1,930,760	-		GFF1907	0.67	-0.1
1,930,760	-		GFF1907	0.67	-1.9
1,930,760	-		GFF1907	0.67	-0.1
1,930,791	+		GFF1907	0.70	-2.0
1,930,794	-		GFF1907	0.71	+0.0
1,930,803	+		GFF1907	0.72	+0.1
1,930,806	-		GFF1907	0.72	-1.0
1,930,808	+		GFF1907	0.72	-0.6
1,930,808	+		GFF1907	0.72	+0.3
1,930,808	+		GFF1907	0.72	+1.0
1,930,808	+		GFF1907	0.72	+1.2
1,930,809	+		GFF1907	0.72	+0.6
1,930,811	-		GFF1907	0.72	-0.9
1,930,812	-		GFF1907	0.73	-0.2
1,930,816	-		GFF1907	0.73	-1.1
1,930,816	-		GFF1907	0.73	+1.1
1,930,816	-		GFF1907	0.73	+1.0
1,930,817	-		GFF1907	0.73	+0.1
1,930,818	+		GFF1907	0.73	+0.8
1,930,818	+		GFF1907	0.73	+0.6
1,930,821	-		GFF1907	0.74	+1.5
1,930,821	-		GFF1907	0.74	+0.6
1,930,823	+		GFF1907	0.74	-0.8
1,930,823	+		GFF1907	0.74	+0.0
1,930,823	+		GFF1907	0.74	-0.2
1,930,823	+		GFF1907	0.74	+0.3
1,930,823	+		GFF1907	0.74	+0.9
1,930,823	+		GFF1907	0.74	+0.5
1,930,823	+		GFF1907	0.74	+0.5
1,930,823	+		GFF1907	0.74	+0.2
1,930,826	-		GFF1907	0.74	-0.2
1,930,826	-		GFF1907	0.74	+0.1
1,930,829	+		GFF1907	0.74	-1.5
1,930,831	-		GFF1907	0.75	-0.5
1,930,831	-		GFF1907	0.75	+0.1
1,930,831	-		GFF1907	0.75	-1.4
1,930,831	-		GFF1907	0.75	-1.4
1,930,831	-		GFF1907	0.75	-0.5
1,930,831	-		GFF1907	0.75	+0.5
1,930,831	-		GFF1907	0.75	-1.4
1,930,831	-		GFF1907	0.75	-1.0
1,930,849	+		GFF1907	0.77	+0.5
1,930,853	+		GFF1907	0.77	-1.1
1,930,858	+		GFF1907	0.78	-0.3
1,930,858	+		GFF1907	0.78	-0.7
1,930,858	+		GFF1907	0.78	-0.3
1,930,858	+		GFF1907	0.78	-1.2
1,930,866	-		GFF1907	0.79	-0.1
1,930,866	-		GFF1907	0.79	+0.1
1,930,866	-		GFF1907	0.79	+0.4
1,930,866	-		GFF1907	0.79	+0.2
1,930,866	-		GFF1907	0.79	+0.0
1,930,866	-		GFF1907	0.79	+0.0
1,930,867	+		GFF1907	0.79	+1.6
1,930,868	+		GFF1907	0.79	-1.2
1,930,871	-		GFF1907	0.79	-0.1
1,930,875	+		GFF1907	0.80	-0.2
1,930,883	-		GFF1907	0.80	-1.4
1,930,883	-		GFF1907	0.80	-1.2
1,930,893	+		GFF1907	0.82	-0.1
1,930,912	+		GFF1907	0.84	-2.1
1,930,914	+		GFF1907	0.84	-0.2
1,930,931	+		GFF1907	0.86	+0.3
1,930,931	+		GFF1907	0.86	-0.4
1,930,931	+		GFF1907	0.86	-0.7
1,930,934	-		GFF1907	0.86	+0.5
1,930,939	-		GFF1907	0.87	+0.6
1,930,939	-		GFF1907	0.87	-0.8
1,930,944	-		GFF1907	0.87	+0.0
1,930,944	-		GFF1907	0.87	-0.9
1,930,970	+				+0.6
1,930,970	+				-2.2
1,930,973	-				-1.5
1,930,973	-				+0.9
1,930,978	-				+0.8
1,930,983	+				-2.3
1,931,009	+				-0.9
1,931,009	+				+0.4
1,931,017	-				-0.1
1,931,017	-				+0.3
1,931,019	-				+0.4
1,931,035	+				-0.3
1,931,040	+				-1.3
1,931,043	-				-0.7
1,931,052	-				-0.3
1,931,053	+				+0.6
1,931,053	+				-2.1
1,931,053	+				-0.5
1,931,091	+				-0.2
1,931,099	-				-0.2
1,931,113	-				-0.2
1,931,130	-				-0.1
1,931,137	-				+0.5
1,931,194	-				-1.1
1,931,199	+				+1.4
1,931,199	+				+0.1
1,931,199	+				-2.3
1,931,207	-				-0.4
1,931,207	-				-0.9
1,931,207	-				-0.5
1,931,260	+		GFF1908	0.13	+0.5
1,931,260	+		GFF1908	0.13	-0.1
1,931,260	+		GFF1908	0.13	-0.6
1,931,260	+		GFF1908	0.13	+0.7
1,931,260	+		GFF1908	0.13	+0.3
1,931,260	+		GFF1908	0.13	-0.5
1,931,260	+		GFF1908	0.13	-0.9
1,931,260	+		GFF1908	0.13	-1.4
1,931,268	-		GFF1908	0.14	-2.0
1,931,268	-		GFF1908	0.14	-0.2
1,931,268	-		GFF1908	0.14	-1.8
1,931,268	-		GFF1908	0.14	-0.1
1,931,268	-		GFF1908	0.14	+2.0
1,931,268	-		GFF1908	0.14	-1.5
1,931,268	-		GFF1908	0.14	+0.6
1,931,268	-		GFF1908	0.14	-0.2
1,931,268	-		GFF1908	0.14	-0.6
1,931,273	-		GFF1908	0.14	-0.8
1,931,301	+		GFF1908	0.17	+0.2
1,931,323	+		GFF1908	0.20	-0.3
1,931,331	-		GFF1908	0.20	+0.8
1,931,331	-		GFF1908	0.20	-1.6
1,931,331	-		GFF1908	0.20	-2.3
1,931,344	-		GFF1908	0.22	-1.3
1,931,344	-		GFF1908	0.22	-1.1
1,931,349	+		GFF1908	0.22	-1.3
1,931,356	+		GFF1908	0.23	+0.0
1,931,359	-		GFF1908	0.23	-0.1
1,931,359	-		GFF1908	0.23	+0.8
1,931,372	-		GFF1908	0.25	+0.8
1,931,382	-		GFF1908	0.26	-0.3
1,931,438	+		GFF1908	0.31	+0.4
1,931,438	+		GFF1908	0.31	+0.3
1,931,438	+		GFF1908	0.31	+0.0
1,931,438	+		GFF1908	0.31	+0.7
1,931,446	-		GFF1908	0.32	+0.5
1,931,446	-		GFF1908	0.32	+0.4
1,931,446	-		GFF1908	0.32	+0.4
1,931,446	-		GFF1908	0.32	-0.1
1,931,446	-		GFF1908	0.32	-0.4
1,931,451	-		GFF1908	0.33	-1.6
1,931,461	+		GFF1908	0.34	+0.5
1,931,464	-		GFF1908	0.34	+0.6
1,931,469	-		GFF1908	0.35	+0.8
1,931,469	-		GFF1908	0.35	-1.4
1,931,504	-		GFF1908	0.38	+0.3
1,931,504	-		GFF1908	0.38	-1.3
1,931,559	+		GFF1908	0.44	-1.3
1,931,577	-		GFF1908	0.46	-0.9
1,931,654	+		GFF1908	0.54	-0.4
1,931,654	+		GFF1908	0.54	+0.1
1,931,654	+		GFF1908	0.54	-2.4
1,931,654	+		GFF1908	0.54	-1.1
1,931,654	+		GFF1908	0.54	-1.1
1,931,654	+		GFF1908	0.54	+0.1
1,931,654	+		GFF1908	0.54	-0.6
1,931,654	+		GFF1908	0.54	-0.1
1,931,654	+		GFF1908	0.54	+0.7
1,931,654	+		GFF1908	0.54	+1.5
1,931,654	+		GFF1908	0.54	+0.1
1,931,655	+		GFF1908	0.54	-0.4
1,931,655	+		GFF1908	0.54	+0.1
1,931,655	+		GFF1908	0.54	+0.8
1,931,655	+		GFF1908	0.54	+0.8
1,931,655	+		GFF1908	0.54	-1.4
1,931,656	+		GFF1908	0.54	+0.0
1,931,662	-		GFF1908	0.54	-1.9
1,931,662	-		GFF1908	0.54	-1.0
1,931,662	-		GFF1908	0.54	+0.6
1,931,662	-		GFF1908	0.54	-0.7
1,931,662	-		GFF1908	0.54	+0.2
1,931,662	-		GFF1908	0.54	+0.1
1,931,662	-		GFF1908	0.54	-1.3
1,931,662	-		GFF1908	0.54	+0.3
1,931,662	-		GFF1908	0.54	-0.0
1,931,662	-		GFF1908	0.54	-1.9
1,931,662	-		GFF1908	0.54	-1.2
1,931,662	-		GFF1908	0.54	-1.0
1,931,662	-		GFF1908	0.54	-0.1
1,931,662	-		GFF1908	0.54	+1.9
1,931,662	-		GFF1908	0.54	-0.4
1,931,666	+		GFF1908	0.55	+0.8
1,931,667	-		GFF1908	0.55	-0.1
1,931,692	+		GFF1908	0.57	+0.7
1,931,698	+		GFF1908	0.58	-1.9
1,931,700	-		GFF1908	0.58	+0.1
1,931,700	-		GFF1908	0.58	-0.2
1,931,700	-		GFF1908	0.58	+1.4
1,931,700	-		GFF1908	0.58	-0.6
1,931,703	+		GFF1908	0.59	+1.5
1,931,703	+		GFF1908	0.59	-2.0
1,931,703	+		GFF1908	0.59	+1.0
1,931,705	-		GFF1908	0.59	-2.1
1,931,710	-		GFF1908	0.59	+0.2
1,931,711	-		GFF1908	0.59	+0.4
1,931,711	-		GFF1908	0.59	+1.1
1,931,711	-		GFF1908	0.59	-0.1
1,931,713	+		GFF1908	0.60	-0.9
1,931,722	-		GFF1908	0.61	+0.1
1,931,727	-		GFF1908	0.61	-0.2
1,931,732	-		GFF1908	0.62	-1.7
1,931,746	+		GFF1908	0.63	+0.8
1,931,768	+		GFF1908	0.65	+1.4
1,931,768	+		GFF1908	0.65	+0.9
1,931,769	+		GFF1908	0.65	-1.4
1,931,769	+		GFF1908	0.65	-0.6
1,931,770	+		GFF1908	0.65	-0.3
1,931,777	-		GFF1908	0.66	+1.1
1,931,784	+		GFF1908	0.67	-0.2
1,931,784	+		GFF1908	0.67	+0.2
1,931,800	+		GFF1908	0.69	+0.5
1,931,815	+		GFF1908	0.70	-0.9
1,931,815	+		GFF1908	0.70	+0.3
1,931,815	+		GFF1908	0.70	+0.6
1,931,815	+		GFF1908	0.70	+0.3
1,931,823	-		GFF1908	0.71	-0.7
1,931,824	+		GFF1908	0.71	+0.0
1,931,850	-		GFF1908	0.74	+0.7
1,931,859	+		GFF1908	0.75	+0.9
1,931,859	+		GFF1908	0.75	+0.1
1,931,860	-		GFF1908	0.75	+0.4
1,931,867	-		GFF1908	0.75	+0.7
1,931,867	-		GFF1908	0.75	-0.7
1,931,885	+		GFF1908	0.77	-1.8
1,931,885	+		GFF1908	0.77	-1.2
1,931,885	+		GFF1908	0.77	-1.7
1,931,893	-		GFF1908	0.78	-0.5
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1,932,023	-				+0.7
1,932,039	+				-2.3
1,932,044	+				+0.1
1,932,049	+				+0.1
1,932,052	-				-2.4
1,932,052	-				-2.1
1,932,052	-				+1.3
1,932,052	-				-0.3
1,932,052	-				+0.4
1,932,057	-				+0.1
1,932,059	+				-0.6
1,932,067	-				-0.3
1,932,067	-				+0.4
1,932,067	-				+0.0
1,932,067	-				+0.5
1,932,067	-				-0.1
1,932,069	+				-2.5
1,932,069	+				-1.3
1,932,070	+				-0.7
1,932,070	+				+1.8
1,932,077	-				-2.4
1,932,078	-				-0.2
1,932,078	-				-0.1
1,932,078	-				-1.1
1,932,078	-				-0.2
1,932,109	+				+0.3
1,932,109	+				+0.4
1,932,116	-				-2.3
1,932,117	-				+0.3
1,932,117	-				-0.2
1,932,117	-				-1.3
1,932,118	-				+0.4
1,932,119	+				-2.7
1,932,127	-				-1.3
1,932,129	-				-2.0
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1,932,305	+		GFF1909	0.69	-1.7
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1,932,305	+		GFF1909	0.69	-2.0
1,932,305	+		GFF1909	0.69	-3.1
1,932,305	+		GFF1909	0.69	-2.2
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1,932,314	-		GFF1909	0.72	-1.9
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1,932,371	-				-2.7
1,932,373	+				-0.3
1,932,402	-				-0.5
1,932,404	-				+0.6
1,932,406	-				-0.3
1,932,407	-				+0.7
1,932,498	+				-0.6