Strain Fitness in Sphingobium sp. HT1-2 around GFF1899

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,922,779	+		GFF1898	0.58	-1.6
1,922,779	+		GFF1898	0.58	+0.4
1,922,787	-		GFF1898	0.59	-0.1
1,922,787	-		GFF1898	0.59	-0.6
1,922,821	+		GFF1898	0.60	-0.6
1,922,841	+		GFF1898	0.61	-0.5
1,922,841	+		GFF1898	0.61	+1.1
1,922,847	-		GFF1898	0.61	-2.5
1,922,869	+		GFF1898	0.62	-1.5
1,922,874	+		GFF1898	0.62	-0.2
1,922,877	-		GFF1898	0.62	-2.4
1,922,914	+		GFF1898	0.64	-1.1
1,922,922	-		GFF1898	0.64	-1.2
1,922,922	-		GFF1898	0.64	+1.1
1,922,933	+		GFF1898	0.65	-1.6
1,922,943	-		GFF1898	0.65	+0.4
1,922,954	+		GFF1898	0.66	+0.7
1,922,954	+		GFF1898	0.66	-0.2
1,922,969	-		GFF1898	0.66	-0.7
1,923,001	+		GFF1898	0.68	-1.2
1,923,014	+		GFF1898	0.68	+0.9
1,923,014	+		GFF1898	0.68	+0.7
1,923,014	+		GFF1898	0.68	-0.1
1,923,014	+		GFF1898	0.68	-1.2
1,923,014	+		GFF1898	0.68	+0.4
1,923,014	+		GFF1898	0.68	+1.4
1,923,014	+		GFF1898	0.68	-0.9
1,923,019	+		GFF1898	0.69	-0.5
1,923,022	-		GFF1898	0.69	-0.2
1,923,022	-		GFF1898	0.69	-1.6
1,923,022	-		GFF1898	0.69	-0.2
1,923,022	-		GFF1898	0.69	-1.2
1,923,022	-		GFF1898	0.69	+0.5
1,923,022	-		GFF1898	0.69	+1.2
1,923,082	-		GFF1898	0.71	-0.6
1,923,107	-		GFF1898	0.72	-0.8
1,923,117	-		GFF1898	0.73	-0.4
1,923,126	-		GFF1898	0.73	+0.2
1,923,145	+		GFF1898	0.74	-0.9
1,923,147	+		GFF1898	0.74	-0.9
1,923,147	+		GFF1898	0.74	+0.4
1,923,156	-		GFF1898	0.74	-1.8
1,923,192	-		GFF1898	0.76	-0.0
1,923,192	-		GFF1898	0.76	-0.7
1,923,211	+		GFF1898	0.77	-0.1
1,923,211	+		GFF1898	0.77	-1.7
1,923,227	+		GFF1898	0.77	+0.4
1,923,237	+		GFF1898	0.78	-0.6
1,923,241	-		GFF1898	0.78	-1.0
1,923,247	+		GFF1898	0.78	-0.7
1,923,252	+		GFF1898	0.78	-1.2
1,923,255	-		GFF1898	0.79	-0.4
1,923,262	-		GFF1898	0.79	+0.3
1,923,318	+		GFF1898	0.81	-1.7
1,923,318	+		GFF1898	0.81	-0.3
1,923,318	+		GFF1898	0.81	-0.3
1,923,318	+		GFF1898	0.81	-2.2
1,923,318	+		GFF1898	0.81	-0.7
1,923,326	-		GFF1898	0.82	-1.0
1,923,326	-		GFF1898	0.82	-1.4
1,923,326	-		GFF1898	0.82	+0.1
1,923,326	-		GFF1898	0.82	-0.9
1,923,326	-		GFF1898	0.82	-2.2
1,923,326	-		GFF1898	0.82	+1.5
1,923,326	-		GFF1898	0.82	-1.2
1,923,326	-		GFF1898	0.82	+0.2
1,923,326	-		GFF1898	0.82	-0.8
1,923,326	-		GFF1898	0.82	+0.4
1,923,326	-		GFF1898	0.82	-0.8
1,923,348	+		GFF1898	0.83	+0.6
1,923,348	-		GFF1898	0.83	-0.7
1,923,369	+		GFF1898	0.84	-0.8
1,923,376	+		GFF1898	0.84	+0.1
1,923,382	+		GFF1898	0.84	+0.2
1,923,388	+		GFF1898	0.84	+0.4
1,923,390	-		GFF1898	0.84	-0.4
1,923,390	-		GFF1898	0.84	-1.2
1,923,390	-		GFF1898	0.84	-2.0
1,923,393	+		GFF1898	0.85	-0.5
1,923,399	+		GFF1898	0.85	-0.2
1,923,399	+		GFF1898	0.85	+0.3
1,923,401	+		GFF1898	0.85	-0.4
1,923,407	-		GFF1898	0.85	-0.7
1,923,505	+		GFF1898	0.89	+0.7
1,923,559	+				-0.5
1,923,559	+				-0.3
1,923,559	+				-0.4
1,923,567	-				-1.1
1,923,569	+				-0.4
1,923,570	+				+1.6
1,923,573	+				-0.4
1,923,577	-				-0.2
1,923,577	-				-0.9
1,923,577	-				+0.3
1,923,578	-				-0.2
1,923,581	-				-0.2
1,923,581	-				+0.5
1,923,589	+				-0.5
1,923,597	-				-2.1
1,923,622	-				-0.4
1,923,633	+				-1.6
1,923,702	-				+0.4
1,923,725	+				-0.9
1,923,760	+				-0.7
1,923,778	-				+0.2
1,923,778	-				+0.8
1,923,825	-		GFF1899	0.15	-0.3
1,923,827	-		GFF1899	0.15	+1.3
1,923,827	-		GFF1899	0.15	-0.6
1,923,834	-		GFF1899	0.17	-0.8
1,923,845	+		GFF1899	0.19	-0.8
1,923,845	+		GFF1899	0.19	-0.5
1,923,845	+		GFF1899	0.19	+0.8
1,923,845	+		GFF1899	0.19	-2.8
1,923,845	+		GFF1899	0.19	+0.5
1,923,845	+		GFF1899	0.19	-1.1
1,923,845	+		GFF1899	0.19	+0.4
1,923,845	+		GFF1899	0.19	-1.6
1,923,845	+		GFF1899	0.19	+0.2
1,923,845	+		GFF1899	0.19	+0.6
1,923,845	+		GFF1899	0.19	-0.4
1,923,850	+		GFF1899	0.20	+0.6
1,923,850	+		GFF1899	0.20	-0.5
1,923,853	+		GFF1899	0.21	-0.4
1,923,853	-		GFF1899	0.21	+0.2
1,923,853	-		GFF1899	0.21	+0.4
1,923,853	-		GFF1899	0.21	-0.0
1,923,855	+		GFF1899	0.21	+0.4
1,923,855	+		GFF1899	0.21	-0.3
1,923,887	-		GFF1899	0.28	-1.8
1,923,915	+		GFF1899	0.33	-0.1
1,923,915	+		GFF1899	0.33	+0.6
1,923,923	-		GFF1899	0.35	+0.4
1,923,923	-		GFF1899	0.35	-1.1
1,923,938	+		GFF1899	0.38	-1.2
1,923,946	+		GFF1899	0.39	-0.0
1,923,987	-		GFF1899	0.48	+0.8
1,923,997	+		GFF1899	0.50	-1.8
1,924,000	-		GFF1899	0.50	-0.4
1,924,001	+		GFF1899	0.50	+0.3
1,924,002	+		GFF1899	0.51	+0.0
1,924,002	+		GFF1899	0.51	-0.7
1,924,005	-		GFF1899	0.51	-1.2
1,924,005	-		GFF1899	0.51	+2.1
1,924,005	-		GFF1899	0.51	-0.1
1,924,007	+		GFF1899	0.52	-0.4
1,924,009	-		GFF1899	0.52	-0.0
1,924,014	-		GFF1899	0.53	-1.0
1,924,029	+		GFF1899	0.56	-1.3
1,924,029	+		GFF1899	0.56	+0.1
1,924,037	-		GFF1899	0.58	-1.1
1,924,085	-		GFF1899	0.67	+0.8
1,924,090	-		GFF1899	0.68	+0.5
1,924,160	-		GFF1899	0.82	+0.0
1,924,166	+		GFF1899	0.84	-0.5
1,924,166	+		GFF1899	0.84	-0.4
1,924,199	-				-1.2
1,924,208	+				+0.1
1,924,208	+				-0.7
1,924,208	+				-0.2
1,924,213	+				-0.1
1,924,213	+				-1.8
1,924,213	+				+0.4
1,924,221	-				+1.7
1,924,236	+				+0.2
1,924,242	+				-0.1
1,924,297	-				-0.4
1,924,299	+				-0.3
1,924,300	-				+0.3
1,924,311	-				+0.7
1,924,311	-				-0.8
1,924,317	+				+0.9
1,924,348	+				-0.2
1,924,359	+				+0.0
1,924,417	+		GFF1900	0.13	-0.5
1,924,425	-		GFF1900	0.14	-1.6
1,924,436	+		GFF1900	0.15	+0.8
1,924,441	+		GFF1900	0.16	-1.5
1,924,441	+		GFF1900	0.16	-0.4
1,924,441	+		GFF1900	0.16	-0.4
1,924,449	-		GFF1900	0.16	-0.9
1,924,449	-		GFF1900	0.16	+0.0
1,924,449	-		GFF1900	0.16	+1.1
1,924,458	+		GFF1900	0.17	+0.6
1,924,459	-		GFF1900	0.17	-0.0
1,924,461	-		GFF1900	0.17	+0.5
1,924,463	+		GFF1900	0.18	+0.9
1,924,463	+		GFF1900	0.18	+0.7
1,924,463	+		GFF1900	0.18	+1.8
1,924,473	+		GFF1900	0.19	-0.6
1,924,473	+		GFF1900	0.19	+0.7
1,924,483	+		GFF1900	0.20	-1.7
1,924,484	+		GFF1900	0.20	-2.2
1,924,491	-		GFF1900	0.20	-1.1
1,924,492	-		GFF1900	0.20	-1.1
1,924,493	+		GFF1900	0.21	-0.2
1,924,559	-		GFF1900	0.27	-1.2
1,924,572	-		GFF1900	0.28	-0.4
1,924,572	-		GFF1900	0.28	+0.2
1,924,574	+		GFF1900	0.28	-0.3
1,924,658	+		GFF1900	0.36	-0.6
1,924,669	+		GFF1900	0.37	-0.9
1,924,686	+		GFF1900	0.39	-0.5
1,924,691	+		GFF1900	0.39	-1.7
1,924,712	+		GFF1900	0.41	-0.6
1,924,712	+		GFF1900	0.41	+1.0
1,924,712	+		GFF1900	0.41	-0.1
1,924,712	+		GFF1900	0.41	-0.8
1,924,720	-		GFF1900	0.42	-1.0
1,924,720	-		GFF1900	0.42	+0.8
1,924,720	-		GFF1900	0.42	+0.8
1,924,720	-		GFF1900	0.42	-0.7
1,924,720	-		GFF1900	0.42	+1.2
1,924,720	-		GFF1900	0.42	+0.7
1,924,730	-		GFF1900	0.43	+0.4
1,924,739	+		GFF1900	0.44	+0.3
1,924,744	+		GFF1900	0.45	-1.4
1,924,747	-		GFF1900	0.45	-0.1
1,924,752	-		GFF1900	0.45	+0.1
1,924,762	+		GFF1900	0.46	+0.3
1,924,767	+		GFF1900	0.47	-0.4
1,924,775	-		GFF1900	0.47	-0.3
1,924,775	-		GFF1900	0.47	-2.0
1,924,775	-		GFF1900	0.47	+0.0
1,924,775	-		GFF1900	0.47	-0.6
1,924,775	-		GFF1900	0.47	-0.5
1,924,777	+		GFF1900	0.48	-1.1
1,924,782	+		GFF1900	0.48	+0.5
1,924,782	+		GFF1900	0.48	-0.1
1,924,782	+		GFF1900	0.48	-0.4
1,924,782	+		GFF1900	0.48	-0.5
1,924,782	+		GFF1900	0.48	+0.1
1,924,782	+		GFF1900	0.48	-0.4
1,924,782	+		GFF1900	0.48	-1.9
1,924,782	+		GFF1900	0.48	-1.5
1,924,788	+		GFF1900	0.49	-2.1
1,924,790	-		GFF1900	0.49	+1.0
1,924,790	-		GFF1900	0.49	-1.5
1,924,790	-		GFF1900	0.49	+0.9
1,924,790	-		GFF1900	0.49	-0.0
1,924,790	-		GFF1900	0.49	-1.8
1,924,790	-		GFF1900	0.49	-0.3
1,924,864	+		GFF1900	0.56	-0.4
1,924,865	-		GFF1900	0.56	+0.4
1,924,865	-		GFF1900	0.56	-1.1
1,924,866	+		GFF1900	0.56	-0.3
1,924,871	+		GFF1900	0.57	-2.3
1,924,874	-		GFF1900	0.57	-0.7
1,924,875	-		GFF1900	0.57	-0.5
1,924,875	-		GFF1900	0.57	+0.0
1,924,875	-		GFF1900	0.57	+0.9
1,924,875	-		GFF1900	0.57	+0.9
1,924,877	+		GFF1900	0.57	-0.7
1,924,877	+		GFF1900	0.57	-0.5
1,924,879	-		GFF1900	0.57	+1.0
1,924,895	+		GFF1900	0.59	+0.7
1,924,903	-		GFF1900	0.60	+0.9
1,924,945	+		GFF1900	0.64	-0.1
1,924,969	+		GFF1900	0.66	-1.5
1,924,969	+		GFF1900	0.66	+0.0
1,925,006	+		GFF1900	0.70	+0.8
1,925,006	+		GFF1900	0.70	-1.2
1,925,014	-		GFF1900	0.70	+1.1
1,925,014	-		GFF1900	0.70	+0.3
1,925,014	-		GFF1900	0.70	-0.3
1,925,014	-		GFF1900	0.70	+0.7
1,925,014	-		GFF1900	0.70	+1.2
1,925,025	+		GFF1900	0.71	-0.2
1,925,050	+		GFF1900	0.74	-0.3
1,925,055	+		GFF1900	0.74	-0.3
1,925,058	-		GFF1900	0.74	-1.7
1,925,062	-		GFF1900	0.75	+0.5
1,925,066	+		GFF1900	0.75	-0.6
1,925,074	-		GFF1900	0.76	+0.8
1,925,076	+		GFF1900	0.76	+1.1
1,925,084	-		GFF1900	0.77	-0.8
1,925,085	+		GFF1900	0.77	+1.3
1,925,092	+		GFF1900	0.78	+0.4
1,925,092	+		GFF1900	0.78	-0.9
1,925,092	+		GFF1900	0.78	+0.3
1,925,092	+		GFF1900	0.78	+0.2
1,925,092	+		GFF1900	0.78	+0.1
1,925,092	+		GFF1900	0.78	+0.6
1,925,093	-		GFF1900	0.78	-1.5
1,925,097	+		GFF1900	0.78	+0.6
1,925,100	-		GFF1900	0.79	+0.1
1,925,105	-		GFF1900	0.79	+0.4
1,925,105	-		GFF1900	0.79	-0.9
1,925,153	+		GFF1900	0.84	-1.0
1,925,161	-		GFF1900	0.84	+1.4
1,925,166	+		GFF1900	0.85	-0.5
1,925,172	-		GFF1900	0.85	-0.1
1,925,174	+		GFF1900	0.86	+0.5
1,925,199	-		GFF1900	0.88	+0.0
1,925,201	+		GFF1900	0.88	+0.5