Strain Fitness in Sphingobium sp. HT1-2 around GFF1835

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,853,299	+		GFF1833	0.42	-0.6
1,853,299	+		GFF1833	0.42	-0.3
1,853,299	+		GFF1833	0.42	-0.7
1,853,299	+		GFF1833	0.42	-0.7
1,853,314	+		GFF1833	0.44	-0.3
1,853,315	-		GFF1833	0.44	+1.4
1,853,317	-		GFF1833	0.44	-1.9
1,853,322	-		GFF1833	0.45	-0.5
1,853,322	-		GFF1833	0.45	-0.4
1,853,322	-		GFF1833	0.45	+0.0
1,853,351	-		GFF1833	0.49	-1.5
1,853,351	-		GFF1833	0.49	-1.6
1,853,370	+		GFF1833	0.52	-0.2
1,853,378	-		GFF1833	0.53	+0.8
1,853,378	-		GFF1833	0.53	+0.2
1,853,396	-		GFF1833	0.56	-0.5
1,853,440	+		GFF1833	0.62	-0.6
1,853,447	+		GFF1833	0.63	-1.5
1,853,455	-		GFF1833	0.64	+0.1
1,853,455	-		GFF1833	0.64	+1.3
1,853,456	+		GFF1833	0.64	+0.1
1,853,456	-		GFF1833	0.64	+0.3
1,853,466	-		GFF1833	0.66	-1.2
1,853,466	-		GFF1833	0.66	-0.2
1,853,466	-		GFF1833	0.66	+0.7
1,853,468	+		GFF1833	0.66	+0.6
1,853,471	-		GFF1833	0.66	-0.4
1,853,471	-		GFF1833	0.66	-0.3
1,853,473	+		GFF1833	0.67	-1.1
1,853,475	+		GFF1833	0.67	-0.6
1,853,477	-		GFF1833	0.67	-0.3
1,853,477	-		GFF1833	0.67	+0.1
1,853,481	-		GFF1833	0.68	-0.9
1,853,483	-		GFF1833	0.68	-0.5
1,853,483	-		GFF1833	0.68	-0.4
1,853,483	-		GFF1833	0.68	+1.2
1,853,498	-		GFF1833	0.70	-0.0
1,853,550	+		GFF1833	0.77	-0.1
1,853,566	-		GFF1833	0.80	-1.9
1,853,599	+		GFF1833	0.84	+0.3
1,853,604	+		GFF1833	0.85	-0.1
1,853,608	-		GFF1833	0.86	+0.3
1,853,617	-		GFF1833	0.87	-0.8
1,853,624	+		GFF1833	0.88	-1.0
1,853,642	+				-0.6
1,853,650	+				-0.3
1,853,658	-				+0.7
1,853,658	-				-1.9
1,853,658	-				-1.3
1,853,658	-				-1.3
1,853,658	-				+0.7
1,853,658	-				+0.3
1,853,663	-				-1.1
1,853,665	-				-0.3
1,853,670	-				+0.3
1,853,687	+				+0.7
1,853,700	-				+0.0
1,853,700	-				+1.1
1,853,700	-				+0.2
1,853,709	+				-0.6
1,853,709	+				-0.2
1,853,709	+				-0.4
1,853,709	+				+0.2
1,853,709	+				-1.1
1,853,712	-				+0.0
1,853,712	-				-1.4
1,853,714	+				-1.5
1,853,717	-				-1.2
1,853,717	-				-0.1
1,853,717	-				-0.2
1,853,717	-				-0.5
1,853,717	-				+0.2
1,853,722	-				+0.1
1,853,722	-				-0.3
1,853,722	-				+1.2
1,853,735	-				+0.8
1,853,745	+				+0.8
1,853,751	+				+1.4
1,853,751	+				+0.6
1,853,759	-				-2.1
1,853,767	+				+0.6
1,853,768	-				-0.5
1,853,768	-				+0.5
1,853,777	+		GFF1834	0.11	-0.4
1,853,777	+		GFF1834	0.11	-1.4
1,853,777	+		GFF1834	0.11	-1.7
1,853,807	+		GFF1834	0.17	+0.7
1,853,807	+		GFF1834	0.17	-2.4
1,853,807	+		GFF1834	0.17	+0.4
1,853,807	+		GFF1834	0.17	+0.6
1,853,807	+		GFF1834	0.17	+0.2
1,853,807	+		GFF1834	0.17	+0.1
1,853,807	+		GFF1834	0.17	-0.3
1,853,815	-		GFF1834	0.18	+1.0
1,853,815	-		GFF1834	0.18	-0.8
1,853,815	-		GFF1834	0.18	-1.7
1,853,815	-		GFF1834	0.18	+0.2
1,853,839	+		GFF1834	0.22	-0.4
1,853,844	+		GFF1834	0.23	-1.8
1,853,856	-		GFF1834	0.25	-0.5
1,853,858	+		GFF1834	0.26	-0.5
1,853,860	-		GFF1834	0.26	-1.3
1,853,880	+		GFF1834	0.29	-0.5
1,853,880	+		GFF1834	0.29	+0.9
1,853,882	+		GFF1834	0.30	-2.1
1,853,884	-		GFF1834	0.30	+0.1
1,853,888	-		GFF1834	0.31	-0.4
1,853,888	-		GFF1834	0.31	-1.5
1,853,889	-		GFF1834	0.31	+1.2
1,853,934	-		GFF1834	0.39	+0.6
1,853,948	+		GFF1834	0.41	-0.1
1,853,948	+		GFF1834	0.41	+0.4
1,853,948	+		GFF1834	0.41	+0.2
1,853,948	+		GFF1834	0.41	-1.0
1,853,998	+		GFF1834	0.50	+1.0
1,854,002	-		GFF1834	0.51	+0.7
1,854,006	-		GFF1834	0.51	+0.7
1,854,006	-		GFF1834	0.51	+0.6
1,854,017	+		GFF1834	0.53	-0.4
1,854,022	+		GFF1834	0.54	-0.5
1,854,022	+		GFF1834	0.54	+0.5
1,854,022	+		GFF1834	0.54	+0.5
1,854,030	-		GFF1834	0.55	+0.5
1,854,030	-		GFF1834	0.55	-1.7
1,854,030	-		GFF1834	0.55	+0.3
1,854,030	-		GFF1834	0.55	-0.1
1,854,041	-		GFF1834	0.57	+0.7
1,854,042	+		GFF1834	0.57	+1.3
1,854,052	+		GFF1834	0.59	+0.4
1,854,060	-		GFF1834	0.61	-0.2
1,854,064	+		GFF1834	0.61	-0.8
1,854,090	+		GFF1834	0.66	+0.2
1,854,090	+		GFF1834	0.66	-0.2
1,854,093	-		GFF1834	0.66	+1.3
1,854,103	-		GFF1834	0.68	+0.2
1,854,103	-		GFF1834	0.68	+0.9
1,854,120	-		GFF1834	0.71	+0.5
1,854,122	-		GFF1834	0.71	-1.0
1,854,140	+		GFF1834	0.74	-1.5
1,854,143	+		GFF1834	0.75	-0.3
1,854,146	-		GFF1834	0.76	-1.1
1,854,148	-		GFF1834	0.76	+0.8
1,854,148	-		GFF1834	0.76	+0.3
1,854,148	-		GFF1834	0.76	-3.3
1,854,190	+		GFF1834	0.83	-1.0
1,854,231	-				-0.5
1,854,247	-				+0.1
1,854,258	-				+0.4
1,854,265	+				-2.6
1,854,265	+				-2.3
1,854,273	-				+0.3
1,854,274	-				+0.4
1,854,281	+				+0.2
1,854,281	+				+0.3
1,854,281	+				-0.2
1,854,281	+				-1.7
1,854,281	+				-0.4
1,854,281	+				+0.4
1,854,281	-				+0.0
1,854,289	-				-0.4
1,854,289	-				-0.9
1,854,289	-				-0.1
1,854,289	-				-0.8
1,854,289	-				-0.8
1,854,289	-				-1.1
1,854,289	-				-0.6
1,854,289	-				-1.4
1,854,324	-				+0.2
1,854,328	+				+0.5
1,854,328	+				-0.3
1,854,341	+				-1.7
1,854,341	+				+0.5
1,854,341	+				-1.9
1,854,341	+				-1.5
1,854,341	+				+1.0
1,854,349	-		GFF1835	0.11	-1.0
1,854,349	-		GFF1835	0.11	-0.2
1,854,349	-		GFF1835	0.11	-0.4
1,854,349	-		GFF1835	0.11	-0.3
1,854,361	-		GFF1835	0.13	-0.2
1,854,367	+		GFF1835	0.14	-0.3
1,854,367	+		GFF1835	0.14	-1.0
1,854,375	-		GFF1835	0.16	-0.1
1,854,375	-		GFF1835	0.16	+0.2
1,854,390	+		GFF1835	0.18	-0.4
1,854,390	+		GFF1835	0.18	-0.5
1,854,390	+		GFF1835	0.18	-2.2
1,854,452	-		GFF1835	0.29	-1.1
1,854,455	-		GFF1835	0.30	-0.7
1,854,473	+		GFF1835	0.33	+0.2
1,854,481	-		GFF1835	0.34	-0.5
1,854,486	+		GFF1835	0.35	+2.4
1,854,486	-		GFF1835	0.35	-0.1
1,854,496	-		GFF1835	0.37	-0.1
1,854,497	+		GFF1835	0.37	-2.0
1,854,504	+		GFF1835	0.38	+0.7
1,854,512	-		GFF1835	0.39	-1.7
1,854,530	+		GFF1835	0.42	-0.1
1,854,530	+		GFF1835	0.42	+0.8
1,854,531	+		GFF1835	0.43	-0.3
1,854,533	-		GFF1835	0.43	-0.6
1,854,537	+		GFF1835	0.44	+0.2
1,854,560	+		GFF1835	0.48	+0.9
1,854,568	-		GFF1835	0.49	-0.5
1,854,596	-		GFF1835	0.54	+0.7
1,854,606	-		GFF1835	0.55	+0.0
1,854,637	+		GFF1835	0.61	+0.4
1,854,675	+		GFF1835	0.67	+0.1
1,854,691	+		GFF1835	0.70	-1.3
1,854,691	-		GFF1835	0.70	-0.8
1,854,696	+		GFF1835	0.71	-2.4
1,854,698	+		GFF1835	0.71	+0.7
1,854,706	-		GFF1835	0.73	-0.7
1,854,706	-		GFF1835	0.73	+0.7
1,854,734	+		GFF1835	0.77	+0.8
1,854,734	+		GFF1835	0.77	-1.7
1,854,741	+		GFF1835	0.79	+0.8
1,854,741	+		GFF1835	0.79	-0.2
1,854,742	-		GFF1835	0.79	+0.6
1,854,769	-		GFF1835	0.84	+1.7
1,854,782	+		GFF1835	0.86	-1.8
1,854,792	+		GFF1835	0.87	-0.1
1,854,793	+		GFF1835	0.88	-2.4
1,854,801	-		GFF1835	0.89	-0.8
1,854,801	-		GFF1835	0.89	+1.2
1,854,801	-		GFF1835	0.89	+0.6
1,854,801	-		GFF1835	0.89	+0.2
1,854,801	-		GFF1835	0.89	-0.3
1,854,817	-				-0.7
1,854,820	+				+1.5
1,854,828	+				+0.5
1,854,828	+				+0.8
1,854,834	+				+1.1
1,854,835	-				-0.2
1,854,836	-				-0.3
1,854,836	-				-0.2
1,854,836	-				-0.3
1,854,840	+				-1.2
1,854,848	-				-0.6
1,854,848	-				+0.3
1,854,848	-				+1.2
1,854,858	-				-1.7
1,854,905	+				-1.1
1,854,910	+				+0.5
1,854,914	-				-1.9
1,854,926	+				-1.0
1,854,934	-				+0.9
1,854,953	+				+0.3
1,854,960	+				-0.3
1,854,960	+				-0.2
1,854,960	+				-0.5
1,854,968	-				+0.1
1,854,974	-				+0.9
1,855,000	-				-0.3
1,855,009	+				+0.1
1,855,014	+				-0.4
1,855,016	+				-0.8
1,855,071	+				+0.2
1,855,071	+				-1.7
1,855,078	-				-1.3
1,855,081	+				-0.7
1,855,082	+				+0.2
1,855,088	+				+1.1
1,855,088	+				+0.9
1,855,089	-				-1.4
1,855,090	-				-0.2
1,855,132	-				+0.2
1,855,145	-				-0.5
1,855,148	+				+1.3
1,855,163	+				-0.3
1,855,173	+				-0.2
1,855,173	+				-2.9
1,855,173	+				+0.7
1,855,173	+				+0.3
1,855,173	+				-0.3
1,855,173	+				+0.4
1,855,173	+				-2.0
1,855,173	+				-1.4
1,855,173	+				+0.5
1,855,173	+				-1.9
1,855,173	+				+0.6
1,855,173	+				+0.7
1,855,173	+				+1.1
1,855,181	-				-1.5
1,855,181	-				-1.3
1,855,181	-				-2.3
1,855,181	-				-0.9
1,855,181	-				-0.4
1,855,181	-				-0.3
1,855,181	-				-0.5
1,855,182	+				-1.1
1,855,215	+		GFF1836	0.10	+0.7
1,855,219	-		GFF1836	0.10	-1.5
1,855,220	+		GFF1836	0.10	-0.3
1,855,253	-		GFF1836	0.11	-1.4
1,855,277	-		GFF1836	0.12	-0.7
1,855,284	+		GFF1836	0.12	+1.0
1,855,284	+		GFF1836	0.12	-1.2
1,855,317	+		GFF1836	0.14	-0.3
1,855,317	+		GFF1836	0.14	-1.5
1,855,317	+		GFF1836	0.14	-0.2
1,855,317	+		GFF1836	0.14	+0.0
1,855,320	-		GFF1836	0.14	+0.0
1,855,320	-		GFF1836	0.14	-0.3
1,855,325	-		GFF1836	0.14	-0.9
1,855,325	-		GFF1836	0.14	+0.4
1,855,336	-		GFF1836	0.14	+0.3
1,855,356	-		GFF1836	0.15	-0.1
1,855,363	-		GFF1836	0.15	+0.6
1,855,366	+		GFF1836	0.15	+1.1
1,855,376	+		GFF1836	0.15	-0.7
1,855,378	+		GFF1836	0.16	+0.4
1,855,391	-		GFF1836	0.16	-0.2
1,855,401	-		GFF1836	0.16	+0.9
1,855,406	-		GFF1836	0.16	-0.2
1,855,415	+		GFF1836	0.17	-1.4
1,855,445	-		GFF1836	0.18	-0.5
1,855,448	+		GFF1836	0.18	+0.1
1,855,448	+		GFF1836	0.18	-2.7
1,855,456	-		GFF1836	0.18	-0.1
1,855,481	-		GFF1836	0.19	-1.0
1,855,511	+		GFF1836	0.20	+0.9
1,855,530	-		GFF1836	0.21	+0.2
1,855,535	+		GFF1836	0.21	-0.2
1,855,536	-		GFF1836	0.21	+0.7
1,855,544	+		GFF1836	0.21	-0.9
1,855,546	-		GFF1836	0.21	+0.3
1,855,547	-		GFF1836	0.21	+0.5
1,855,549	+		GFF1836	0.21	-0.4
1,855,551	-		GFF1836	0.21	+0.7
1,855,552	-		GFF1836	0.21	-1.8
1,855,569	-		GFF1836	0.22	+0.2
1,855,572	+		GFF1836	0.22	-1.3
1,855,578	-		GFF1836	0.22	-2.1
1,855,578	-		GFF1836	0.22	-1.4
1,855,611	+		GFF1836	0.23	-0.1
1,855,611	+		GFF1836	0.23	+0.2
1,855,619	-		GFF1836	0.23	+0.1
1,855,624	-		GFF1836	0.24	-0.5
1,855,626	-		GFF1836	0.24	+0.3
1,855,633	+		GFF1836	0.24	-0.5
1,855,669	+		GFF1836	0.25	+0.6
1,855,669	+		GFF1836	0.25	-0.1
1,855,674	+		GFF1836	0.25	-0.0
1,855,674	+		GFF1836	0.25	-0.9
1,855,674	+		GFF1836	0.25	-0.2
1,855,674	+		GFF1836	0.25	+0.7
1,855,677	-		GFF1836	0.25	+0.7
1,855,677	-		GFF1836	0.25	+1.2
1,855,677	-		GFF1836	0.25	+0.7
1,855,677	-		GFF1836	0.25	-1.2
1,855,679	+		GFF1836	0.25	-1.6
1,855,682	-		GFF1836	0.26	+1.0
1,855,682	-		GFF1836	0.26	-0.2
1,855,682	-		GFF1836	0.26	-1.6
1,855,682	-		GFF1836	0.26	+1.2
1,855,682	-		GFF1836	0.26	-1.1
1,855,684	+		GFF1836	0.26	-0.8
1,855,684	+		GFF1836	0.26	-0.4
1,855,687	-		GFF1836	0.26	-0.1
1,855,692	-		GFF1836	0.26	+0.2
1,855,692	-		GFF1836	0.26	+0.9
1,855,749	+		GFF1836	0.28	+1.0
1,855,758	+		GFF1836	0.28	-1.7
1,855,758	+		GFF1836	0.28	+0.3
1,855,764	-		GFF1836	0.28	-0.4
1,855,766	-		GFF1836	0.28	-1.9
1,855,774	-		GFF1836	0.29	+0.6
1,855,774	-		GFF1836	0.29	-0.8
1,855,803	+		GFF1836	0.30	-0.2
1,855,810	+		GFF1836	0.30	+0.1
1,855,810	+		GFF1836	0.30	-0.1
1,855,814	+		GFF1836	0.30	+1.8
1,855,818	-		GFF1836	0.30	+0.3
1,855,818	-		GFF1836	0.30	-0.8