Strain Fitness in Sphingobium sp. HT1-2 around GFF1694

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,716,436	+				+0.0
1,716,436	+				+0.4
1,716,444	-				-1.4
1,716,464	-				-0.1
1,716,479	+				+0.0
1,716,497	+				-2.3
1,716,504	+				-0.7
1,716,506	+				-3.3
1,716,512	+				-1.7
1,716,512	+				+0.6
1,716,512	+				-0.7
1,716,512	-				-2.1
1,716,512	-				+0.8
1,716,518	+				-1.3
1,716,520	-				-0.2
1,716,520	-				+0.0
1,716,521	-				-0.9
1,716,521	-				-1.3
1,716,521	-				+0.1
1,716,526	-				-1.7
1,716,526	-				-0.5
1,716,526	-				-1.4
1,716,526	-				-0.5
1,716,527	+				+0.5
1,716,535	-				-0.4
1,716,597	+				-2.1
1,716,628	+				-0.2
1,716,634	+				-2.9
1,716,634	+				-1.8
1,716,636	-				-1.2
1,716,642	-				+0.1
1,716,647	-				-1.3
1,716,647	-				-2.7
1,716,647	-				-0.7
1,716,653	-				+1.5
1,716,672	+				-0.6
1,716,703	+		GFF1693	0.11	+0.6
1,716,708	+		GFF1693	0.12	-0.3
1,716,725	-		GFF1693	0.17	+0.6
1,716,730	-		GFF1693	0.19	-0.6
1,716,737	-		GFF1693	0.21	-1.9
1,716,747	-		GFF1693	0.23	+0.4
1,716,751	+		GFF1693	0.25	-1.5
1,716,751	+		GFF1693	0.25	-1.7
1,716,759	-		GFF1693	0.27	+1.0
1,716,759	-		GFF1693	0.27	-0.5
1,716,778	-		GFF1693	0.32	-1.7
1,716,801	-		GFF1693	0.39	-0.7
1,716,801	-		GFF1693	0.39	+0.4
1,716,801	-		GFF1693	0.39	+0.1
1,716,814	-		GFF1693	0.43	-1.0
1,716,842	-		GFF1693	0.51	-0.2
1,716,851	+		GFF1693	0.54	-1.2
1,716,860	+		GFF1693	0.56	-0.6
1,716,863	-		GFF1693	0.57	+0.2
1,716,879	+		GFF1693	0.62	-1.7
1,716,887	-		GFF1693	0.64	+1.4
1,716,887	-		GFF1693	0.64	+0.4
1,716,887	-		GFF1693	0.64	-0.2
1,716,897	+		GFF1693	0.67	-0.9
1,716,897	-		GFF1693	0.67	+0.8
1,716,899	+		GFF1693	0.68	+0.8
1,716,904	+		GFF1693	0.69	+0.3
1,716,905	-		GFF1693	0.69	-0.7
1,716,907	-		GFF1693	0.70	+0.1
1,716,919	+		GFF1693	0.73	-0.9
1,716,927	-		GFF1693	0.76	+0.8
1,716,942	-		GFF1693	0.80	+0.4
1,716,962	+		GFF1693	0.86	-0.9
1,716,962	-		GFF1693	0.86	+0.1
1,716,975	+		GFF1693	0.90	+0.3
1,716,975	+		GFF1693	0.90	+0.3
1,716,975	+		GFF1693	0.90	+1.8
1,716,975	+		GFF1693	0.90	-0.1
1,716,980	+				-0.6
1,716,983	-				-0.4
1,716,983	-				-0.2
1,716,983	-				+0.9
1,716,983	-				-2.3
1,716,985	+				-0.1
1,716,988	-				+0.2
1,716,988	-				+1.4
1,716,988	-				+1.9
1,716,988	-				-0.7
1,716,988	-				-0.8
1,716,993	-				-0.7
1,716,993	-				-0.4
1,716,993	-				+0.3
1,717,002	+				+0.1
1,717,020	+				-0.8
1,717,028	-				+0.4
1,717,028	-				+1.5
1,717,045	-				-0.9
1,717,045	-				-0.6
1,717,051	+				-1.1
1,717,052	+				+0.6
1,717,060	+				+0.6
1,717,069	+				+0.4
1,717,077	-				+0.1
1,717,084	+				+0.1
1,717,094	+				-1.9
1,717,102	-				-1.5
1,717,106	+				-0.8
1,717,107	-				+0.5
1,717,121	-				+0.0
1,717,126	+				+0.8
1,717,126	+				+0.8
1,717,128	+				+1.4
1,717,134	-				+0.5
1,717,143	+				-1.1
1,717,167	+				-0.6
1,717,253	+				-0.6
1,717,333	+				-1.4
1,717,333	+				-1.0
1,717,338	+				+0.4
1,717,351	+				-0.2
1,717,365	+				+0.5
1,717,375	+				+0.7
1,717,375	+				+1.9
1,717,375	+				+0.1
1,717,375	-				-1.5
1,717,383	-				+0.7
1,717,383	-				-1.2
1,717,383	-				+0.3
1,717,383	-				-0.7
1,717,383	-				+1.1
1,717,383	-				-0.3
1,717,383	-				-3.7
1,717,383	-				-0.8
1,717,393	+				+0.6
1,717,395	-				-0.5
1,717,401	-				-0.2
1,717,405	+				+0.3
1,717,419	+				-0.7
1,717,444	+				-1.1
1,717,446	+				-2.3
1,717,452	-				-0.7
1,717,456	+				+1.6
1,717,456	+				-0.8
1,717,464	-				-1.6
1,717,480	-				-0.7
1,717,512	+				-1.5
1,717,519	+				-1.2
1,717,520	-				+1.6
1,717,521	-				+0.4
1,717,539	+		GFF1694	0.11	-0.6
1,717,540	-		GFF1694	0.11	+0.8
1,717,550	+		GFF1694	0.12	-2.2
1,717,553	+		GFF1694	0.12	+0.6
1,717,561	-		GFF1694	0.13	+1.1
1,717,561	-		GFF1694	0.13	+1.0
1,717,561	-		GFF1694	0.13	-0.1
1,717,567	+		GFF1694	0.14	-1.8
1,717,573	-		GFF1694	0.14	-0.9
1,717,585	+		GFF1694	0.16	-1.2
1,717,585	+		GFF1694	0.16	-2.1
1,717,585	+		GFF1694	0.16	-0.2
1,717,609	+		GFF1694	0.18	+0.2
1,717,609	+		GFF1694	0.18	-0.6
1,717,617	-		GFF1694	0.19	-0.8
1,717,631	+		GFF1694	0.20	+0.6
1,717,634	-		GFF1694	0.21	+0.1
1,717,636	+		GFF1694	0.21	+0.3
1,717,648	+		GFF1694	0.22	-0.4
1,717,649	-		GFF1694	0.22	-0.9
1,717,680	+		GFF1694	0.25	-0.3
1,717,680	+		GFF1694	0.25	-0.5
1,717,680	+		GFF1694	0.25	-0.8
1,717,680	+		GFF1694	0.25	+0.1
1,717,680	+		GFF1694	0.25	+0.3
1,717,680	+		GFF1694	0.25	-0.8
1,717,688	-		GFF1694	0.26	-1.3
1,717,688	-		GFF1694	0.26	-0.0
1,717,688	-		GFF1694	0.26	+0.2
1,717,688	-		GFF1694	0.26	-0.8
1,717,693	-		GFF1694	0.27	-0.2
1,717,693	-		GFF1694	0.27	+0.0
1,717,697	-		GFF1694	0.27	+1.3
1,717,740	+		GFF1694	0.31	-1.0
1,717,744	+		GFF1694	0.32	-2.4
1,717,752	-		GFF1694	0.33	+1.1
1,717,762	+		GFF1694	0.34	-1.3
1,717,765	-		GFF1694	0.34	+0.3
1,717,767	+		GFF1694	0.34	+0.4
1,717,775	-		GFF1694	0.35	-0.7
1,717,788	+		GFF1694	0.36	-1.1
1,717,792	+		GFF1694	0.37	-1.4
1,717,792	+		GFF1694	0.37	-2.6
1,717,792	+		GFF1694	0.37	+0.3
1,717,800	-		GFF1694	0.38	-1.6
1,717,800	-		GFF1694	0.38	-0.6
1,717,800	-		GFF1694	0.38	+0.3
1,717,800	-		GFF1694	0.38	+0.4
1,717,803	+		GFF1694	0.38	+0.6
1,717,808	+		GFF1694	0.38	+0.6
1,717,808	+		GFF1694	0.38	-0.0
1,717,810	-		GFF1694	0.39	-0.6
1,717,813	+		GFF1694	0.39	-0.7
1,717,816	-		GFF1694	0.39	-0.7
1,717,816	-		GFF1694	0.39	-0.6
1,717,821	-		GFF1694	0.40	+1.1
1,717,832	-		GFF1694	0.41	-0.1
1,717,887	-		GFF1694	0.47	-0.2
1,717,906	-		GFF1694	0.49	+1.8
1,717,907	+		GFF1694	0.49	-0.4
1,717,923	-		GFF1694	0.50	+0.0
1,717,930	+		GFF1694	0.51	-1.4
1,717,953	-		GFF1694	0.53	-0.3
1,717,976	+		GFF1694	0.56	-1.7
1,717,976	+		GFF1694	0.56	+0.3
1,718,006	+		GFF1694	0.59	-0.2
1,718,026	+		GFF1694	0.61	+0.8
1,718,067	+		GFF1694	0.65	+2.0
1,718,087	+		GFF1694	0.67	+0.6
1,718,118	-		GFF1694	0.70	-0.2
1,718,122	+		GFF1694	0.71	+0.5
1,718,122	+		GFF1694	0.71	+0.3
1,718,122	+		GFF1694	0.71	-0.6
1,718,130	-		GFF1694	0.72	-0.7
1,718,130	-		GFF1694	0.72	-0.9
1,718,130	-		GFF1694	0.72	-1.7
1,718,150	+		GFF1694	0.74	-0.3
1,718,153	-		GFF1694	0.74	-0.4
1,718,160	-		GFF1694	0.75	-0.9
1,718,165	+		GFF1694	0.75	-0.8
1,718,165	+		GFF1694	0.75	-1.9
1,718,165	+		GFF1694	0.75	-2.0
1,718,165	+		GFF1694	0.75	-0.2
1,718,165	+		GFF1694	0.75	-1.1
1,718,165	+		GFF1694	0.75	-0.2
1,718,173	-		GFF1694	0.76	+1.0
1,718,173	-		GFF1694	0.76	-1.2
1,718,174	+		GFF1694	0.76	-1.6
1,718,182	-		GFF1694	0.77	-0.5
1,718,185	-		GFF1694	0.77	+0.6
1,718,192	-		GFF1694	0.78	+0.6
1,718,220	-		GFF1694	0.81	-1.7
1,718,220	-		GFF1694	0.81	-1.5
1,718,319	-				+0.7
1,718,319	-				+0.1
1,718,320	+				+0.6
1,718,321	+				+1.2
1,718,321	+				-1.1
1,718,321	+				+0.0
1,718,321	+				+1.3
1,718,321	+				-1.5
1,718,327	+				-1.3
1,718,329	-				+0.2
1,718,374	+				-0.4
1,718,382	+				+0.3
1,718,382	+				-0.6
1,718,390	+				+0.7
1,718,390	-				-0.9
1,718,397	-				+0.0
1,718,400	+				-0.2
1,718,400	+				+0.1
1,718,401	+				-0.9
1,718,407	+				+0.1
1,718,407	+				-0.7
1,718,407	+				+0.5
1,718,407	+				-0.7
1,718,407	+				-0.7
1,718,407	+				-2.0
1,718,407	+				-1.3
1,718,407	+				+0.4
1,718,407	+				-2.0
1,718,407	+				+0.4
1,718,407	+				-1.1
1,718,407	+				-1.0
1,718,407	+				+1.5
1,718,408	-				-0.5
1,718,415	-				-0.9
1,718,415	-				-0.5
1,718,415	-				+0.5
1,718,415	-				+0.2
1,718,415	-				-1.3
1,718,415	-				-2.3
1,718,415	-				+0.1
1,718,415	-				-0.0
1,718,415	-				-0.1
1,718,415	-				-1.7
1,718,415	-				+0.7
1,718,415	-				-0.7
1,718,415	-				-0.9
1,718,415	-				+0.3
1,718,425	-				-0.8
1,718,433	+				+0.3
1,718,468	-				+1.0
1,718,468	-				+0.1
1,718,489	-				+0.1
1,718,495	-				-1.0
1,718,507	+				+0.8
1,718,507	+				+0.8
1,718,514	+				-0.2
1,718,515	-				-0.2
1,718,515	-				-1.8
1,718,550	-				-0.1
1,718,572	-				+1.7
1,718,606	+				-0.4
1,718,614	-				+0.3
1,718,629	-				+0.2
1,718,634	+				-0.4
1,718,702	-				+0.9
1,718,702	-				+0.9
1,718,706	+				-0.8
1,718,757	-				-2.2
1,718,764	+				+1.1
1,718,764	-				-1.6
1,718,824	+		GFF1695	0.12	-0.8
1,718,862	+		GFF1695	0.13	-0.2
1,718,862	+		GFF1695	0.13	+0.0
1,718,870	-		GFF1695	0.13	-1.1
1,718,870	-		GFF1695	0.13	+0.2
1,718,870	-		GFF1695	0.13	+0.8
1,718,870	-		GFF1695	0.13	-1.0
1,718,892	-		GFF1695	0.14	+0.3
1,718,914	+		GFF1695	0.15	-0.5
1,718,920	+		GFF1695	0.15	+0.6
1,718,921	+		GFF1695	0.15	+0.3
1,718,921	+		GFF1695	0.15	+1.6
1,718,921	-		GFF1695	0.15	-0.6
1,718,954	-		GFF1695	0.17	-1.3
1,718,957	+		GFF1695	0.17	-0.5
1,718,957	+		GFF1695	0.17	+0.2
1,718,974	+		GFF1695	0.17	+0.6
1,718,974	+		GFF1695	0.17	-0.1
1,718,982	-		GFF1695	0.18	+0.6
1,718,982	-		GFF1695	0.18	-0.3
1,718,982	-		GFF1695	0.18	+1.0
1,718,982	-		GFF1695	0.18	-0.6
1,718,986	+		GFF1695	0.18	-1.3
1,718,992	-		GFF1695	0.18	+0.4
1,718,992	-		GFF1695	0.18	+0.4
1,718,994	+		GFF1695	0.18	-2.0
1,718,994	+		GFF1695	0.18	+0.2
1,718,994	+		GFF1695	0.18	-0.6
1,718,994	+		GFF1695	0.18	-0.4
1,719,002	-		GFF1695	0.18	-0.2
1,719,002	-		GFF1695	0.18	-0.7
1,719,002	-		GFF1695	0.18	-1.7
1,719,004	+		GFF1695	0.19	-1.6
1,719,004	+		GFF1695	0.19	+0.1
1,719,011	+		GFF1695	0.19	-0.8
1,719,022	+		GFF1695	0.19	-0.6
1,719,026	+		GFF1695	0.19	-0.4
1,719,026	+		GFF1695	0.19	-0.2
1,719,036	+		GFF1695	0.20	-1.0
1,719,044	-		GFF1695	0.20	+0.3
1,719,044	-		GFF1695	0.20	-0.6
1,719,044	-		GFF1695	0.20	-2.1
1,719,052	+		GFF1695	0.20	+0.3
1,719,066	-		GFF1695	0.21	+1.5
1,719,097	+		GFF1695	0.22	-0.8
1,719,105	-		GFF1695	0.23	-0.6
1,719,107	+		GFF1695	0.23	+0.3
1,719,114	+		GFF1695	0.23	-0.5
1,719,115	-		GFF1695	0.23	-1.9
1,719,115	-		GFF1695	0.23	-0.8
1,719,115	-		GFF1695	0.23	+1.1
1,719,122	-		GFF1695	0.23	-1.1
1,719,122	-		GFF1695	0.23	-1.5
1,719,194	-		GFF1695	0.26	-0.3
1,719,203	+		GFF1695	0.26	-1.2
1,719,211	-		GFF1695	0.27	-0.5
1,719,211	-		GFF1695	0.27	-0.3
1,719,211	-		GFF1695	0.27	-0.4
1,719,211	-		GFF1695	0.27	-0.3
1,719,221	-		GFF1695	0.27	+0.3
1,719,226	+		GFF1695	0.27	+0.3
1,719,236	+		GFF1695	0.28	-0.1
1,719,236	+		GFF1695	0.28	-1.6
1,719,236	+		GFF1695	0.28	-0.4
1,719,236	+		GFF1695	0.28	-0.4
1,719,236	+		GFF1695	0.28	+0.3
1,719,236	+		GFF1695	0.28	-1.1
1,719,244	-		GFF1695	0.28	-0.7
1,719,244	-		GFF1695	0.28	-0.3
1,719,244	-		GFF1695	0.28	-0.1
1,719,244	-		GFF1695	0.28	-1.6
1,719,244	-		GFF1695	0.28	-0.5
1,719,244	-		GFF1695	0.28	-0.1
1,719,244	-		GFF1695	0.28	-2.9
1,719,244	-		GFF1695	0.28	-1.6
1,719,246	+		GFF1695	0.28	+0.1
1,719,246	+		GFF1695	0.28	-1.6
1,719,254	-		GFF1695	0.28	+0.3
1,719,254	-		GFF1695	0.28	+1.6
1,719,256	+		GFF1695	0.28	-0.4
1,719,256	+		GFF1695	0.28	-0.5
1,719,256	+		GFF1695	0.28	+0.3
1,719,256	+		GFF1695	0.28	-0.7
1,719,259	-		GFF1695	0.29	+1.3
1,719,262	+		GFF1695	0.29	-0.2
1,719,270	-		GFF1695	0.29	+1.0
1,719,270	-		GFF1695	0.29	-0.7
1,719,270	-		GFF1695	0.29	+0.8
1,719,291	+		GFF1695	0.30	-1.8
1,719,299	-		GFF1695	0.30	-0.1
1,719,299	-		GFF1695	0.30	+1.2
1,719,315	+		GFF1695	0.31	-0.3
1,719,320	+		GFF1695	0.31	+0.2
1,719,320	+		GFF1695	0.31	+0.3
1,719,320	+		GFF1695	0.31	+1.3
1,719,328	-		GFF1695	0.31	-0.2
1,719,328	-		GFF1695	0.31	+0.3
1,719,328	-		GFF1695	0.31	+0.4
1,719,328	-		GFF1695	0.31	+1.1
1,719,328	-		GFF1695	0.31	-0.6
1,719,369	+		GFF1695	0.33	+0.4
1,719,369	+		GFF1695	0.33	-0.6
1,719,369	+		GFF1695	0.33	-1.0
1,719,377	-		GFF1695	0.33	-1.9
1,719,393	+		GFF1695	0.34	-0.7