Strain Fitness in Sphingobium sp. HT1-2 around GFF1611

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,637,533	+		GFF1610	0.15	-0.1
1,637,539	-		GFF1610	0.16	-0.6
1,637,541	-		GFF1610	0.16	-0.0
1,637,547	+		GFF1610	0.16	-1.5
1,637,562	+		GFF1610	0.18	-0.6
1,637,562	+		GFF1610	0.18	+0.9
1,637,562	+		GFF1610	0.18	-0.2
1,637,562	+		GFF1610	0.18	+0.3
1,637,570	-		GFF1610	0.19	-1.4
1,637,570	-		GFF1610	0.19	-0.3
1,637,595	-		GFF1610	0.21	-0.8
1,637,597	+		GFF1610	0.21	-0.1
1,637,605	-		GFF1610	0.22	+0.1
1,637,605	-		GFF1610	0.22	+0.4
1,637,613	+		GFF1610	0.23	+2.3
1,637,655	+		GFF1610	0.26	+0.3
1,637,672	+		GFF1610	0.28	+0.3
1,637,705	+		GFF1610	0.31	+0.2
1,637,705	+		GFF1610	0.31	-1.0
1,637,705	+		GFF1610	0.31	-0.2
1,637,705	+		GFF1610	0.31	-0.8
1,637,705	+		GFF1610	0.31	-1.9
1,637,705	+		GFF1610	0.31	-0.6
1,637,710	+		GFF1610	0.31	-1.8
1,637,713	-		GFF1610	0.32	+0.1
1,637,715	+		GFF1610	0.32	-0.5
1,637,718	-		GFF1610	0.32	-0.3
1,637,718	-		GFF1610	0.32	+1.2
1,637,718	-		GFF1610	0.32	+0.3
1,637,718	-		GFF1610	0.32	-0.2
1,637,718	-		GFF1610	0.32	+0.7
1,637,728	+		GFF1610	0.33	-1.2
1,637,728	+		GFF1610	0.33	-0.2
1,637,728	-		GFF1610	0.33	-0.4
1,637,730	-		GFF1610	0.33	-0.1
1,637,730	-		GFF1610	0.33	-0.2
1,637,730	-		GFF1610	0.33	+0.1
1,637,737	+		GFF1610	0.34	+0.0
1,637,737	+		GFF1610	0.34	+0.3
1,637,737	+		GFF1610	0.34	-0.2
1,637,737	+		GFF1610	0.34	-1.6
1,637,742	+		GFF1610	0.34	-0.9
1,637,745	-		GFF1610	0.35	+0.3
1,637,747	+		GFF1610	0.35	+0.2
1,637,747	+		GFF1610	0.35	+0.1
1,637,747	+		GFF1610	0.35	-0.7
1,637,747	+		GFF1610	0.35	+0.5
1,637,747	+		GFF1610	0.35	+0.8
1,637,747	+		GFF1610	0.35	-2.2
1,637,747	+		GFF1610	0.35	-1.9
1,637,747	+		GFF1610	0.35	-0.6
1,637,747	+		GFF1610	0.35	+0.1
1,637,747	+		GFF1610	0.35	-0.4
1,637,752	+		GFF1610	0.35	-2.0
1,637,755	-		GFF1610	0.36	+0.6
1,637,755	-		GFF1610	0.36	-0.2
1,637,755	-		GFF1610	0.36	+0.2
1,637,755	-		GFF1610	0.36	-0.5
1,637,755	-		GFF1610	0.36	-0.8
1,637,755	-		GFF1610	0.36	+0.3
1,637,755	-		GFF1610	0.36	-2.5
1,637,755	-		GFF1610	0.36	+0.5
1,637,755	-		GFF1610	0.36	-2.4
1,637,774	+		GFF1610	0.37	-0.3
1,637,775	-		GFF1610	0.37	-0.7
1,637,775	-		GFF1610	0.37	-0.7
1,637,780	+		GFF1610	0.38	-0.5
1,637,780	+		GFF1610	0.38	+1.4
1,637,782	-		GFF1610	0.38	-0.7
1,637,788	-		GFF1610	0.39	-0.7
1,637,836	+		GFF1610	0.43	-0.4
1,637,844	+		GFF1610	0.44	-0.4
1,637,872	-		GFF1610	0.46	-1.5
1,637,872	-		GFF1610	0.46	-0.2
1,637,888	-		GFF1610	0.48	+0.1
1,637,888	-		GFF1610	0.48	+1.0
1,637,911	-		GFF1610	0.50	+0.2
1,637,917	+		GFF1610	0.51	-0.3
1,637,917	+		GFF1610	0.51	-0.7
1,637,925	-		GFF1610	0.51	-2.8
1,637,925	-		GFF1610	0.51	-1.5
1,637,925	-		GFF1610	0.51	-0.9
1,637,958	+		GFF1610	0.54	+0.4
1,637,958	+		GFF1610	0.54	-0.1
1,637,969	+		GFF1610	0.55	+1.3
1,637,969	+		GFF1610	0.55	-0.2
1,637,977	-		GFF1610	0.56	-0.2
1,637,977	-		GFF1610	0.56	+0.3
1,638,014	-		GFF1610	0.59	+0.8
1,638,015	+		GFF1610	0.60	-0.4
1,638,048	+		GFF1610	0.63	+0.8
1,638,079	-		GFF1610	0.65	-1.6
1,638,087	+		GFF1610	0.66	-1.7
1,638,087	+		GFF1610	0.66	-0.8
1,638,087	+		GFF1610	0.66	-0.9
1,638,095	-		GFF1610	0.67	-1.2
1,638,095	-		GFF1610	0.67	+0.1
1,638,095	-		GFF1610	0.67	+0.7
1,638,095	-		GFF1610	0.67	-0.4
1,638,095	-		GFF1610	0.67	+0.8
1,638,095	-		GFF1610	0.67	-0.6
1,638,111	+		GFF1610	0.68	-2.0
1,638,116	+		GFF1610	0.69	+1.2
1,638,116	+		GFF1610	0.69	-1.4
1,638,131	+		GFF1610	0.70	-2.8
1,638,134	-		GFF1610	0.71	+0.2
1,638,139	-		GFF1610	0.71	-0.7
1,638,144	-		GFF1610	0.71	-2.4
1,638,170	-		GFF1610	0.74	-0.3
1,638,193	-		GFF1610	0.76	+1.0
1,638,193	-		GFF1610	0.76	-0.2
1,638,212	+		GFF1610	0.78	-1.6
1,638,217	-		GFF1610	0.78	+1.2
1,638,222	-		GFF1610	0.79	+1.1
1,638,226	+		GFF1610	0.79	-0.5
1,638,244	-		GFF1610	0.81	+0.8
1,638,249	+		GFF1610	0.81	-0.5
1,638,262	+		GFF1610	0.82	+0.2
1,638,262	+		GFF1610	0.82	+0.8
1,638,262	+		GFF1610	0.82	-0.9
1,638,262	+		GFF1610	0.82	+0.8
1,638,270	-		GFF1610	0.83	-0.9
1,638,270	-		GFF1610	0.83	+0.5
1,638,270	-		GFF1610	0.83	-0.4
1,638,270	-		GFF1610	0.83	-1.2
1,638,276	+		GFF1610	0.84	+0.3
1,638,277	+		GFF1610	0.84	-1.0
1,638,284	-		GFF1610	0.84	-0.6
1,638,285	-		GFF1610	0.84	-1.5
1,638,294	+		GFF1610	0.85	-0.6
1,638,307	-		GFF1610	0.86	+0.4
1,638,307	-		GFF1610	0.86	-0.2
1,638,325	+		GFF1610	0.88	-0.4
1,638,328	-		GFF1610	0.88	-0.0
1,638,403	-				-0.5
1,638,415	+				+0.3
1,638,423	-				-2.7
1,638,423	-				+0.4
1,638,482	-				+0.5
1,638,484	+				-0.1
1,638,487	-				-0.4
1,638,501	+				+0.2
1,638,501	+				-0.5
1,638,509	-				-0.6
1,638,509	-				-1.1
1,638,509	-				-1.6
1,638,509	-				-0.2
1,638,530	+				+0.9
1,638,569	-				+0.8
1,638,574	-				+1.7
1,638,583	+		GFF1611	0.11	+0.5
1,638,583	+		GFF1611	0.11	+0.3
1,638,591	-		GFF1611	0.12	+0.3
1,638,591	-		GFF1611	0.12	-1.5
1,638,591	-		GFF1611	0.12	+0.5
1,638,605	-		GFF1611	0.14	+0.9
1,638,630	+		GFF1611	0.18	+1.0
1,638,637	+		GFF1611	0.19	-2.1
1,638,650	+		GFF1611	0.21	-0.1
1,638,650	+		GFF1611	0.21	-1.0
1,638,652	+		GFF1611	0.21	+0.9
1,638,658	-		GFF1611	0.22	-0.6
1,638,658	-		GFF1611	0.22	-1.4
1,638,658	-		GFF1611	0.22	+1.0
1,638,658	-		GFF1611	0.22	+0.0
1,638,658	-		GFF1611	0.22	+0.2
1,638,660	+		GFF1611	0.22	-1.1
1,638,664	+		GFF1611	0.23	-1.9
1,638,711	+		GFF1611	0.30	-0.4
1,638,720	-		GFF1611	0.31	-1.5
1,638,728	+		GFF1611	0.32	-0.5
1,638,756	-		GFF1611	0.36	-0.5
1,638,758	+		GFF1611	0.36	-0.5
1,638,758	+		GFF1611	0.36	-0.2
1,638,792	-		GFF1611	0.41	+0.1
1,638,792	-		GFF1611	0.41	-0.7
1,638,802	+		GFF1611	0.43	-0.7
1,638,822	-		GFF1611	0.46	-0.4
1,638,837	+		GFF1611	0.48	-2.4
1,638,857	+		GFF1611	0.51	+0.4
1,638,900	+		GFF1611	0.57	-1.7
1,638,905	+		GFF1611	0.57	-0.4
1,638,908	-		GFF1611	0.58	+0.6
1,638,908	-		GFF1611	0.58	-1.7
1,638,917	+		GFF1611	0.59	-0.3
1,638,921	-		GFF1611	0.60	+0.5
1,638,940	-		GFF1611	0.62	+1.2
1,638,964	+		GFF1611	0.66	+1.0
1,638,984	+		GFF1611	0.69	-1.7
1,638,992	-		GFF1611	0.70	-0.1
1,638,992	-		GFF1611	0.70	+0.3
1,639,038	-		GFF1611	0.77	+0.1
1,639,119	+		GFF1611	0.88	-1.1
1,639,143	+				-0.6
1,639,143	+				-0.8
1,639,151	-				-2.9
1,639,151	-				-1.6
1,639,170	+				+1.2
1,639,178	-				-0.1
1,639,197	+				-1.0
1,639,242	+				-2.1
1,639,255	-				+0.8
1,639,275	+				-0.7
1,639,283	-				-1.8
1,639,312	+				+1.6
1,639,325	-				+0.1
1,639,325	-				+1.4
1,639,413	+				+0.3
1,639,424	+				+0.8
1,639,424	+				-0.8
1,639,424	+				-0.8
1,639,424	+				+1.1
1,639,424	+				+0.2
1,639,424	+				-0.3
1,639,424	+				+0.1
1,639,424	+				-0.5
1,639,426	-				+0.0
1,639,432	-				-0.7
1,639,432	-				-1.9
1,639,432	-				-0.7
1,639,432	-				+0.8
1,639,432	-				+0.7
1,639,432	-				+0.9
1,639,433	+				-1.1
1,639,433	+				+1.1
1,639,433	+				-0.5
1,639,433	+				+0.1
1,639,441	-				+0.1
1,639,441	-				-0.2
1,639,441	-				+1.1
1,639,441	-				-0.2
1,639,441	-				-0.4
1,639,443	+				-0.7
1,639,460	+				-0.7
1,639,460	+				-1.3
1,639,464	-				-1.2
1,639,467	+				+0.2
1,639,477	+				+0.2
1,639,484	-				+0.1
1,639,509	+				-0.5
1,639,509	+				+0.4
1,639,519	+				-0.1
1,639,527	-				-1.4
1,639,527	-				-1.1
1,639,530	+				-0.3
1,639,533	+				+0.9
1,639,538	-				-1.7
1,639,538	-				+0.3
1,639,579	-				-0.5
1,639,604	+				-0.2
1,639,612	-				-0.0
1,639,620	+				+0.6
1,639,628	-		GFF1612	0.10	-0.8
1,639,628	-		GFF1612	0.10	-2.4
1,639,630	+		GFF1612	0.10	+0.7
1,639,633	-		GFF1612	0.11	-0.7
1,639,635	+		GFF1612	0.11	+1.0
1,639,638	-		GFF1612	0.11	-0.1
1,639,639	-		GFF1612	0.11	-0.4
1,639,648	-		GFF1612	0.12	-2.2
1,639,683	+		GFF1612	0.16	-1.6
1,639,683	+		GFF1612	0.16	+0.5
1,639,683	-		GFF1612	0.16	-1.4
1,639,691	-		GFF1612	0.17	-0.5
1,639,691	-		GFF1612	0.17	+0.5
1,639,691	-		GFF1612	0.17	-0.9
1,639,691	-		GFF1612	0.17	-1.1
1,639,702	+		GFF1612	0.18	-0.9
1,639,753	+		GFF1612	0.24	-1.0
1,639,761	-		GFF1612	0.25	+0.6
1,639,773	+		GFF1612	0.26	+0.5
1,639,833	+		GFF1612	0.33	-1.4
1,639,887	-		GFF1612	0.39	+1.2
1,639,946	-		GFF1612	0.45	-0.7
1,639,966	-		GFF1612	0.48	-0.2
1,639,969	-		GFF1612	0.48	+0.4
1,639,976	+		GFF1612	0.49	+0.2
1,639,976	+		GFF1612	0.49	-1.0
1,639,986	+		GFF1612	0.50	+0.1
1,639,986	+		GFF1612	0.50	-0.4
1,639,998	+		GFF1612	0.51	-0.2
1,639,998	+		GFF1612	0.51	-0.4
1,639,998	+		GFF1612	0.51	+0.5
1,640,006	-		GFF1612	0.52	+0.0
1,640,006	-		GFF1612	0.52	+0.8
1,640,081	+		GFF1612	0.60	+0.7
1,640,089	-		GFF1612	0.61	+0.5
1,640,119	-		GFF1612	0.64	+0.4
1,640,131	-		GFF1612	0.66	+0.5
1,640,167	-		GFF1612	0.70	-1.1
1,640,193	-		GFF1612	0.73	+1.8