Strain Fitness in Sphingobium sp. HT1-2 around GFF1510

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,539,263	+		GFF1509	0.35	+0.2
1,539,268	+		GFF1509	0.35	+1.2
1,539,268	+		GFF1509	0.35	-0.5
1,539,271	-		GFF1509	0.35	-0.3
1,539,271	-		GFF1509	0.35	-1.4
1,539,273	+		GFF1509	0.35	+0.9
1,539,276	-		GFF1509	0.35	+0.1
1,539,276	-		GFF1509	0.35	-0.0
1,539,276	-		GFF1509	0.35	+0.4
1,539,286	-		GFF1509	0.36	-0.0
1,539,297	+		GFF1509	0.37	-0.6
1,539,297	+		GFF1509	0.37	-0.0
1,539,305	-		GFF1509	0.37	-0.6
1,539,305	-		GFF1509	0.37	-2.1
1,539,323	+		GFF1509	0.39	-1.4
1,539,323	+		GFF1509	0.39	-0.6
1,539,323	+		GFF1509	0.39	+0.6
1,539,364	-		GFF1509	0.41	-0.2
1,539,364	-		GFF1509	0.41	-2.5
1,539,391	-		GFF1509	0.43	+1.9
1,539,422	+		GFF1509	0.45	-0.7
1,539,455	+		GFF1509	0.47	-1.3
1,539,455	+		GFF1509	0.47	+0.4
1,539,460	+		GFF1509	0.48	+1.5
1,539,461	+		GFF1509	0.48	-1.6
1,539,461	+		GFF1509	0.48	+0.1
1,539,463	-		GFF1509	0.48	+0.1
1,539,463	-		GFF1509	0.48	-0.1
1,539,463	-		GFF1509	0.48	+0.5
1,539,463	-		GFF1509	0.48	+1.8
1,539,463	-		GFF1509	0.48	-0.4
1,539,463	-		GFF1509	0.48	-0.6
1,539,468	-		GFF1509	0.48	-0.3
1,539,469	-		GFF1509	0.48	+0.9
1,539,473	-		GFF1509	0.48	+1.0
1,539,474	+		GFF1509	0.48	+1.2
1,539,474	-		GFF1509	0.48	+0.8
1,539,516	-		GFF1509	0.51	-0.6
1,539,518	+		GFF1509	0.51	+0.2
1,539,554	+		GFF1509	0.54	-1.2
1,539,572	-		GFF1509	0.55	-0.1
1,539,591	+		GFF1509	0.56	-0.0
1,539,591	+		GFF1509	0.56	+0.4
1,539,591	+		GFF1509	0.56	-0.5
1,539,601	+		GFF1509	0.57	-0.5
1,539,601	+		GFF1509	0.57	+0.0
1,539,601	+		GFF1509	0.57	+0.1
1,539,608	+		GFF1509	0.57	-0.3
1,539,609	-		GFF1509	0.57	-1.9
1,539,609	-		GFF1509	0.57	-0.6
1,539,609	-		GFF1509	0.57	+0.1
1,539,616	-		GFF1509	0.58	-0.1
1,539,626	-		GFF1509	0.58	-0.7
1,539,626	-		GFF1509	0.58	+1.1
1,539,645	+		GFF1509	0.60	+0.8
1,539,645	+		GFF1509	0.60	-0.8
1,539,650	+		GFF1509	0.60	-1.8
1,539,650	+		GFF1509	0.60	+0.5
1,539,650	+		GFF1509	0.60	+1.4
1,539,650	+		GFF1509	0.60	+0.5
1,539,653	-		GFF1509	0.60	+0.5
1,539,660	+		GFF1509	0.61	-0.1
1,539,689	+		GFF1509	0.63	+0.1
1,539,697	-		GFF1509	0.63	-0.2
1,539,697	-		GFF1509	0.63	+0.5
1,539,718	+		GFF1509	0.64	-0.1
1,539,721	-		GFF1509	0.65	+0.7
1,539,723	+		GFF1509	0.65	+0.5
1,539,733	+		GFF1509	0.65	-0.5
1,539,733	+		GFF1509	0.65	+1.3
1,539,741	-		GFF1509	0.66	-0.1
1,539,741	-		GFF1509	0.66	-0.1
1,539,741	-		GFF1509	0.66	+0.6
1,539,741	-		GFF1509	0.66	-0.5
1,539,741	-		GFF1509	0.66	+0.4
1,539,749	+		GFF1509	0.67	+0.4
1,539,749	+		GFF1509	0.67	-2.2
1,539,802	+		GFF1509	0.70	-0.2
1,539,804	+		GFF1509	0.70	-1.8
1,539,810	-		GFF1509	0.71	-0.5
1,539,819	-		GFF1509	0.71	+1.5
1,539,828	+		GFF1509	0.72	-0.6
1,539,836	+		GFF1509	0.72	+1.1
1,539,844	-		GFF1509	0.73	+0.8
1,539,846	+		GFF1509	0.73	+0.5
1,539,861	+		GFF1509	0.74	-0.4
1,539,877	-		GFF1509	0.75	-2.3
1,539,893	+		GFF1509	0.76	+1.2
1,539,897	+		GFF1509	0.76	-0.4
1,539,898	+		GFF1509	0.76	+0.5
1,539,898	+		GFF1509	0.76	-0.2
1,539,898	+		GFF1509	0.76	-0.0
1,539,901	-		GFF1509	0.77	+0.4
1,539,901	-		GFF1509	0.77	-0.3
1,539,906	-		GFF1509	0.77	+1.2
1,539,906	-		GFF1509	0.77	+0.0
1,539,906	-		GFF1509	0.77	+0.3
1,539,906	-		GFF1509	0.77	-0.1
1,539,906	-		GFF1509	0.77	-0.0
1,539,911	-		GFF1509	0.77	-0.4
1,539,915	-		GFF1509	0.77	+0.2
1,539,924	+		GFF1509	0.78	-0.2
1,539,924	+		GFF1509	0.78	-1.1
1,539,924	+		GFF1509	0.78	-0.0
1,539,924	+		GFF1509	0.78	+0.3
1,539,926	+		GFF1509	0.78	-2.5
1,539,926	+		GFF1509	0.78	+0.3
1,539,929	+		GFF1509	0.78	-0.4
1,539,932	-		GFF1509	0.79	-0.5
1,539,932	-		GFF1509	0.79	+0.5
1,539,932	-		GFF1509	0.79	-1.3
1,539,934	-		GFF1509	0.79	-0.5
1,539,934	-		GFF1509	0.79	+0.3
1,539,942	+		GFF1509	0.79	-0.9
1,539,962	-		GFF1509	0.81	+0.5
1,539,964	+		GFF1509	0.81	+0.6
1,539,969	+		GFF1509	0.81	+0.8
1,539,969	+		GFF1509	0.81	+0.9
1,539,972	-		GFF1509	0.81	+0.9
1,539,975	+		GFF1509	0.81	+1.0
1,539,975	+		GFF1509	0.81	-0.3
1,539,977	-		GFF1509	0.82	+0.3
1,539,977	-		GFF1509	0.82	+0.8
1,539,977	-		GFF1509	0.82	+0.4
1,539,977	-		GFF1509	0.82	+0.3
1,539,983	-		GFF1509	0.82	-2.2
1,540,036	+		GFF1509	0.85	+0.5
1,540,044	-		GFF1509	0.86	+1.0
1,540,044	-		GFF1509	0.86	-0.6
1,540,044	-		GFF1509	0.86	+0.8
1,540,044	-		GFF1509	0.86	-0.3
1,540,052	+		GFF1509	0.86	-0.5
1,540,052	+		GFF1509	0.86	+0.0
1,540,056	+		GFF1509	0.87	-0.6
1,540,056	+		GFF1509	0.87	+0.2
1,540,060	-		GFF1509	0.87	+0.3
1,540,060	-		GFF1509	0.87	+0.4
1,540,062	+		GFF1509	0.87	-0.1
1,540,062	+		GFF1509	0.87	+0.3
1,540,064	-		GFF1509	0.87	+0.5
1,540,064	-		GFF1509	0.87	+0.5
1,540,065	-		GFF1509	0.87	+2.0
1,540,076	-		GFF1509	0.88	+0.0
1,540,089	+		GFF1509	0.89	+0.2
1,540,103	+		GFF1509	0.90	-0.7
1,540,104	+		GFF1509	0.90	+1.1
1,540,111	-				+0.4
1,540,111	-				-0.1
1,540,116	-				+0.3
1,540,123	-				+0.1
1,540,149	+				-1.5
1,540,157	-				+0.4
1,540,157	-				+0.8
1,540,172	-				-0.5
1,540,175	+				-1.5
1,540,175	+				-0.3
1,540,175	+				-0.8
1,540,175	+				+1.2
1,540,175	+				-1.8
1,540,175	+				-1.1
1,540,183	-				-0.8
1,540,183	-				-0.0
1,540,183	-				-1.0
1,540,183	-				-0.6
1,540,183	-				-0.8
1,540,183	-				+1.3
1,540,183	-				-1.9
1,540,183	-				-0.0
1,540,183	-				+0.4
1,540,183	-				-0.8
1,540,183	-				-0.9
1,540,183	-				-1.4
1,540,183	-				-0.3
1,540,183	-				-1.3
1,540,188	-				+0.4
1,540,189	-				+0.6
1,540,199	-				-2.0
1,540,199	-				-0.4
1,540,217	-				+1.0
1,540,225	-				+0.2
1,540,225	-				-1.4
1,540,225	-				-0.1
1,540,225	-				+0.8
1,540,230	-				+0.0
1,540,243	+				-1.4
1,540,251	-				+1.0
1,540,251	-				-1.8
1,540,251	-				-0.1
1,540,258	+				-0.4
1,540,258	+				-0.9
1,540,258	+				-0.9
1,540,261	-				-0.1
1,540,261	-				-0.1
1,540,266	-				+0.3
1,540,266	-				-0.2
1,540,281	+				+0.1
1,540,309	+				+0.5
1,540,309	+				-0.7
1,540,309	+				-0.6
1,540,309	+				-3.2
1,540,317	-				-0.2
1,540,317	-				+0.2
1,540,317	-				-2.8
1,540,317	-				-1.4
1,540,317	-				-2.5
1,540,317	-				-0.2
1,540,317	-				-0.1
1,540,317	-				-0.0
1,540,320	+				+0.6
1,540,329	-		GFF1510	0.11	-1.4
1,540,330	+		GFF1510	0.11	-0.5
1,540,330	+		GFF1510	0.11	-0.1
1,540,338	-		GFF1510	0.12	-0.2
1,540,338	-		GFF1510	0.12	+0.5
1,540,340	+		GFF1510	0.12	+1.8
1,540,375	+		GFF1510	0.18	+0.1
1,540,375	+		GFF1510	0.18	+0.5
1,540,375	+		GFF1510	0.18	+1.2
1,540,378	-		GFF1510	0.18	+0.1
1,540,383	-		GFF1510	0.19	+0.3
1,540,383	-		GFF1510	0.19	-0.9
1,540,383	-		GFF1510	0.19	+0.7
1,540,383	-		GFF1510	0.19	-1.0
1,540,383	-		GFF1510	0.19	-0.6
1,540,398	-		GFF1510	0.21	+0.8
1,540,403	-		GFF1510	0.22	+0.4
1,540,403	-		GFF1510	0.22	-0.0
1,540,403	-		GFF1510	0.22	-0.4
1,540,421	+		GFF1510	0.25	+0.1
1,540,423	+		GFF1510	0.25	+0.4
1,540,453	+		GFF1510	0.30	-0.8
1,540,453	+		GFF1510	0.30	-0.0
1,540,461	-		GFF1510	0.31	+1.6
1,540,461	-		GFF1510	0.31	-0.1
1,540,489	-		GFF1510	0.36	-0.9
1,540,524	-		GFF1510	0.41	-0.0
1,540,609	-		GFF1510	0.54	-1.2
1,540,621	+		GFF1510	0.56	+0.3
1,540,628	-		GFF1510	0.57	+0.4
1,540,679	-		GFF1510	0.65	+1.8
1,540,687	-		GFF1510	0.66	+1.2
1,540,689	+		GFF1510	0.67	-0.6
1,540,689	+		GFF1510	0.67	-0.4
1,540,689	+		GFF1510	0.67	-1.1
1,540,689	+		GFF1510	0.67	+1.0
1,540,694	+		GFF1510	0.67	+0.7
1,540,697	-		GFF1510	0.68	+1.0
1,540,697	-		GFF1510	0.68	+0.6
1,540,697	-		GFF1510	0.68	+0.6
1,540,698	-		GFF1510	0.68	-0.8
1,540,702	-		GFF1510	0.69	+0.2
1,540,709	+		GFF1510	0.70	+0.5
1,540,709	+		GFF1510	0.70	+0.6
1,540,709	+		GFF1510	0.70	+1.6
1,540,709	+		GFF1510	0.70	-1.6
1,540,709	+		GFF1510	0.70	-1.7
1,540,709	+		GFF1510	0.70	+1.3
1,540,709	+		GFF1510	0.70	-0.5
1,540,709	+		GFF1510	0.70	+0.4
1,540,709	+		GFF1510	0.70	+0.7
1,540,709	+		GFF1510	0.70	+0.3
1,540,709	+		GFF1510	0.70	+1.2
1,540,709	+		GFF1510	0.70	+1.1
1,540,709	+		GFF1510	0.70	-0.1
1,540,709	+		GFF1510	0.70	+0.8
1,540,717	-		GFF1510	0.71	-0.7
1,540,717	-		GFF1510	0.71	-0.3
1,540,717	-		GFF1510	0.71	+2.1
1,540,717	-		GFF1510	0.71	+0.9
1,540,717	-		GFF1510	0.71	-0.6
1,540,717	-		GFF1510	0.71	-0.4
1,540,717	-		GFF1510	0.71	-1.6
1,540,717	-		GFF1510	0.71	-0.1
1,540,717	-		GFF1510	0.71	-0.2
1,540,717	-		GFF1510	0.71	-0.2
1,540,740	-		GFF1510	0.74	-0.1
1,540,758	+		GFF1510	0.77	-2.0
1,540,766	-		GFF1510	0.78	+0.2
1,540,767	-		GFF1510	0.79	-0.6
1,540,768	-		GFF1510	0.79	+0.6
1,540,805	-		GFF1510	0.84	+0.8
1,540,812	-		GFF1510	0.86	+0.9
1,540,817	+		GFF1510	0.86	+0.0
1,540,825	-		GFF1510	0.88	-0.6
1,540,837	+		GFF1510	0.89	-0.1
1,540,839	+		GFF1510	0.90	+0.3
1,540,847	+				+0.4
1,540,847	-				-0.5
1,540,862	+				+0.4
1,540,870	-				-1.0
1,540,872	+				+0.2
1,540,872	+				+0.7
1,540,880	+				+1.2
1,540,880	-				-0.0
1,540,880	-				+0.1
1,540,906	+				+1.0
1,540,915	+				-0.4
1,540,916	+				-0.5
1,540,923	+				-0.4
1,540,924	-				-0.2
1,540,924	-				-2.4
1,540,924	-				-0.7
1,540,933	-				-0.6
1,540,972	+				+0.7
1,540,972	+				-0.2
1,540,973	+				+0.5
1,541,007	-				-2.0
1,541,010	+				-0.1
1,541,010	+				+0.2
1,541,010	+				-1.3
1,541,018	-				-0.9
1,541,018	-				+1.0
1,541,018	-				+0.0
1,541,040	-				+0.9