Strain Fitness in Sphingobium sp. HT1-2 around GFF1509

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,537,740	+				-0.2
1,537,748	-				+0.5
1,537,772	+				-0.6
1,537,789	-				-1.6
1,537,799	-				+0.1
1,537,807	+				+0.9
1,537,820	-				+0.0
1,537,848	+				-0.0
1,537,848	+				-0.6
1,537,848	+				-1.3
1,537,856	-				-0.8
1,537,856	-				+0.7
1,537,856	-				-0.1
1,537,856	-				+0.6
1,537,856	-				-1.3
1,537,860	+				-0.2
1,537,860	+				-0.9
1,537,868	-				-0.4
1,537,868	-				+0.0
1,537,868	-				-0.5
1,537,868	-				-1.7
1,537,868	-				-1.4
1,537,878	+		GFF1508	0.10	-0.3
1,537,878	+		GFF1508	0.10	+0.7
1,537,878	+		GFF1508	0.10	+0.3
1,537,878	+		GFF1508	0.10	-0.1
1,537,878	+		GFF1508	0.10	-0.2
1,537,878	+		GFF1508	0.10	+1.2
1,537,878	+		GFF1508	0.10	-0.7
1,537,878	+		GFF1508	0.10	+0.4
1,537,878	+		GFF1508	0.10	+0.5
1,537,878	+		GFF1508	0.10	+0.4
1,537,878	+		GFF1508	0.10	+0.3
1,537,878	+		GFF1508	0.10	+0.1
1,537,878	+		GFF1508	0.10	+0.8
1,537,883	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	+1.2
1,537,886	-		GFF1508	0.11	+0.8
1,537,886	-		GFF1508	0.11	+0.3
1,537,886	-		GFF1508	0.11	-0.3
1,537,886	-		GFF1508	0.11	+1.2
1,537,886	-		GFF1508	0.11	-2.2
1,537,886	-		GFF1508	0.11	-1.3
1,537,886	-		GFF1508	0.11	+0.1
1,537,891	+		GFF1508	0.11	+0.5
1,537,932	+		GFF1508	0.16	-0.0
1,537,953	-		GFF1508	0.18	-2.4
1,537,954	+		GFF1508	0.18	+0.6
1,537,954	+		GFF1508	0.18	+0.7
1,537,964	+		GFF1508	0.19	-1.4
1,537,964	+		GFF1508	0.19	+1.6
1,537,964	+		GFF1508	0.19	-0.5
1,537,967	-		GFF1508	0.19	+0.9
1,537,969	+		GFF1508	0.20	-0.5
1,537,969	+		GFF1508	0.20	-1.2
1,537,972	-		GFF1508	0.20	+1.2
1,537,987	-		GFF1508	0.22	+0.7
1,538,041	-		GFF1508	0.27	+0.1
1,538,046	-		GFF1508	0.28	+0.5
1,538,076	-		GFF1508	0.31	+1.4
1,538,100	-		GFF1508	0.34	-0.1
1,538,100	-		GFF1508	0.34	+0.3
1,538,102	+		GFF1508	0.34	-0.9
1,538,107	+		GFF1508	0.34	-0.5
1,538,110	-		GFF1508	0.35	-0.7
1,538,120	-		GFF1508	0.36	-0.8
1,538,144	+		GFF1508	0.38	+0.0
1,538,192	+		GFF1508	0.43	-1.5
1,538,197	+		GFF1508	0.44	+0.5
1,538,200	-		GFF1508	0.44	-0.2
1,538,200	-		GFF1508	0.44	+0.1
1,538,200	-		GFF1508	0.44	-0.1
1,538,202	+		GFF1508	0.45	-2.0
1,538,202	+		GFF1508	0.45	+0.1
1,538,205	-		GFF1508	0.45	-1.0
1,538,205	-		GFF1508	0.45	+1.2
1,538,205	-		GFF1508	0.45	-0.0
1,538,210	-		GFF1508	0.45	+0.2
1,538,215	+		GFF1508	0.46	+0.7
1,538,215	+		GFF1508	0.46	-1.1
1,538,299	+		GFF1508	0.55	-1.7
1,538,299	+		GFF1508	0.55	-0.7
1,538,307	-		GFF1508	0.56	-0.2
1,538,307	-		GFF1508	0.56	-0.2
1,538,307	-		GFF1508	0.56	-0.1
1,538,322	+		GFF1508	0.57	+0.2
1,538,322	+		GFF1508	0.57	-0.9
1,538,329	-		GFF1508	0.58	+0.1
1,538,344	-		GFF1508	0.60	-0.8
1,538,349	+		GFF1508	0.60	+0.2
1,538,351	+		GFF1508	0.60	+0.3
1,538,351	-		GFF1508	0.60	+0.1
1,538,354	-		GFF1508	0.61	-0.5
1,538,378	+		GFF1508	0.63	-0.5
1,538,386	-		GFF1508	0.64	-0.4
1,538,398	-		GFF1508	0.65	-0.3
1,538,411	-		GFF1508	0.67	+2.0
1,538,411	-		GFF1508	0.67	-0.6
1,538,411	-		GFF1508	0.67	-0.7
1,538,413	+		GFF1508	0.67	+0.7
1,538,421	-		GFF1508	0.68	-0.2
1,538,422	-		GFF1508	0.68	-0.5
1,538,429	-		GFF1508	0.69	-0.8
1,538,484	+		GFF1508	0.75	+0.6
1,538,497	+		GFF1508	0.76	+0.4
1,538,497	+		GFF1508	0.76	+0.6
1,538,497	+		GFF1508	0.76	+0.0
1,538,497	+		GFF1508	0.76	+0.6
1,538,497	+		GFF1508	0.76	-1.3
1,538,503	+		GFF1508	0.77	+0.2
1,538,507	+		GFF1508	0.77	-2.3
1,538,507	+		GFF1508	0.77	-0.3
1,538,507	+		GFF1508	0.77	-0.2
1,538,507	+		GFF1508	0.77	-0.2
1,538,508	+		GFF1508	0.77	+0.6
1,538,508	+		GFF1508	0.77	+0.5
1,538,508	+		GFF1508	0.77	-0.5
1,538,508	+		GFF1508	0.77	-0.1
1,538,508	+		GFF1508	0.77	-0.9
1,538,508	+		GFF1508	0.77	-1.0
1,538,508	+		GFF1508	0.77	+0.0
1,538,508	+		GFF1508	0.77	+0.5
1,538,508	+		GFF1508	0.77	-0.9
1,538,508	+		GFF1508	0.77	+1.2
1,538,508	+		GFF1508	0.77	-1.4
1,538,508	+		GFF1508	0.77	+0.4
1,538,511	-		GFF1508	0.77	+0.3
1,538,511	-		GFF1508	0.77	-0.2
1,538,511	-		GFF1508	0.77	-0.1
1,538,513	+		GFF1508	0.78	-0.2
1,538,513	+		GFF1508	0.78	-0.4
1,538,515	-		GFF1508	0.78	-1.0
1,538,515	-		GFF1508	0.78	+0.1
1,538,515	-		GFF1508	0.78	+0.4
1,538,515	-		GFF1508	0.78	+0.2
1,538,516	-		GFF1508	0.78	+0.1
1,538,516	-		GFF1508	0.78	+0.7
1,538,516	-		GFF1508	0.78	-0.3
1,538,516	-		GFF1508	0.78	+0.5
1,538,516	-		GFF1508	0.78	+0.2
1,538,516	-		GFF1508	0.78	-2.3
1,538,516	-		GFF1508	0.78	-0.0
1,538,516	-		GFF1508	0.78	-0.7
1,538,516	-		GFF1508	0.78	+1.3
1,538,516	-		GFF1508	0.78	+0.1
1,538,521	-		GFF1508	0.78	+1.0
1,538,521	-		GFF1508	0.78	-0.8
1,538,526	-		GFF1508	0.79	+0.1
1,538,531	-		GFF1508	0.80	+1.4
1,538,536	-		GFF1508	0.80	+0.7
1,538,547	-		GFF1508	0.81	-0.5
1,538,550	+		GFF1508	0.82	-2.6
1,538,614	-		GFF1508	0.88	-1.4
1,538,614	-		GFF1508	0.88	+0.9
1,538,621	+		GFF1508	0.89	-0.6
1,538,639	+				+0.5
1,538,642	-				-0.4
1,538,647	-				-0.4
1,538,701	+				+1.1
1,538,704	-				-0.5
1,538,706	+				+0.5
1,538,706	+				-0.4
1,538,711	+				+0.4
1,538,714	-				+0.4
1,538,714	-				-1.2
1,538,714	-				-0.6
1,538,714	-				+0.7
1,538,716	+				-0.8
1,538,724	+				+0.4
1,538,730	+				+0.8
1,538,732	-				-1.0
1,538,734	+				-1.3
1,538,734	+				+1.2
1,538,734	+				+0.1
1,538,734	+				-1.4
1,538,734	+				-0.4
1,538,734	+				-0.2
1,538,734	+				-0.3
1,538,734	+				-0.4
1,538,734	+				+1.2
1,538,742	-				+0.6
1,538,742	-				+0.3
1,538,742	-				+0.5
1,538,742	-				-0.9
1,538,742	-				+0.2
1,538,742	-				-1.1
1,538,744	+				-0.2
1,538,744	+				-0.4
1,538,744	+				-1.9
1,538,744	+				+0.4
1,538,762	-				-0.4
1,538,762	-				-1.0
1,538,785	-				+1.1
1,538,824	+				-0.1
1,538,827	-				-0.8
1,538,836	+				+0.8
1,538,845	+				-0.8
1,538,845	+				+0.3
1,538,845	+				+0.2
1,538,845	+				+0.9
1,538,853	-				+0.7
1,538,853	-				-1.5
1,538,855	+				+0.0
1,538,866	-				-0.6
1,538,894	+		GFF1509	0.10	+0.6
1,538,902	-		GFF1509	0.11	-0.1
1,538,933	+		GFF1509	0.13	+0.4
1,538,933	+		GFF1509	0.13	+0.2
1,538,933	+		GFF1509	0.13	+0.7
1,538,933	+		GFF1509	0.13	-0.9
1,538,941	-		GFF1509	0.13	+0.4
1,538,996	+		GFF1509	0.17	+0.2
1,539,032	+		GFF1509	0.19	+0.2
1,539,042	+		GFF1509	0.20	+0.1
1,539,058	-		GFF1509	0.21	-0.2
1,539,059	+		GFF1509	0.21	-0.7
1,539,064	+		GFF1509	0.21	+0.0
1,539,064	+		GFF1509	0.21	+0.2
1,539,064	+		GFF1509	0.21	+0.0
1,539,064	+		GFF1509	0.21	+0.5
1,539,064	+		GFF1509	0.21	+1.3
1,539,064	+		GFF1509	0.21	-2.6
1,539,064	+		GFF1509	0.21	-0.1
1,539,067	-		GFF1509	0.22	-0.4
1,539,067	-		GFF1509	0.22	+1.0
1,539,067	-		GFF1509	0.22	-1.7
1,539,067	-		GFF1509	0.22	-2.2
1,539,072	-		GFF1509	0.22	+0.0
1,539,072	-		GFF1509	0.22	+0.5
1,539,072	-		GFF1509	0.22	+1.2
1,539,072	-		GFF1509	0.22	+1.3
1,539,077	-		GFF1509	0.22	-0.4
1,539,140	-		GFF1509	0.26	+1.1
1,539,141	+		GFF1509	0.27	+1.0
1,539,145	+		GFF1509	0.27	+1.4
1,539,153	-		GFF1509	0.27	-0.2
1,539,153	-		GFF1509	0.27	-1.1
1,539,153	-		GFF1509	0.27	+0.6
1,539,158	+		GFF1509	0.28	-0.4
1,539,166	-		GFF1509	0.28	-0.6
1,539,166	-		GFF1509	0.28	-0.2
1,539,166	-		GFF1509	0.28	+0.2
1,539,181	-		GFF1509	0.29	+0.1
1,539,204	+		GFF1509	0.31	-1.1
1,539,229	-		GFF1509	0.32	-1.5
1,539,237	-		GFF1509	0.33	+0.4
1,539,237	-		GFF1509	0.33	+0.8
1,539,239	+		GFF1509	0.33	+1.6
1,539,239	+		GFF1509	0.33	+0.0
1,539,239	+		GFF1509	0.33	+0.5
1,539,239	+		GFF1509	0.33	+0.6
1,539,239	+		GFF1509	0.33	-0.1
1,539,239	+		GFF1509	0.33	-1.4
1,539,239	+		GFF1509	0.33	-0.3
1,539,239	+		GFF1509	0.33	-0.5
1,539,247	-		GFF1509	0.34	+0.5
1,539,247	-		GFF1509	0.34	+0.0
1,539,247	-		GFF1509	0.34	-0.0
1,539,247	-		GFF1509	0.34	+0.6
1,539,247	-		GFF1509	0.34	-0.5
1,539,247	-		GFF1509	0.34	+0.0
1,539,247	-		GFF1509	0.34	+0.2
1,539,263	+		GFF1509	0.35	+0.2
1,539,268	+		GFF1509	0.35	+1.2
1,539,268	+		GFF1509	0.35	-0.5
1,539,271	-		GFF1509	0.35	-0.3
1,539,271	-		GFF1509	0.35	-1.4
1,539,273	+		GFF1509	0.35	+0.9
1,539,276	-		GFF1509	0.35	+0.1
1,539,276	-		GFF1509	0.35	-0.0
1,539,276	-		GFF1509	0.35	+0.4
1,539,286	-		GFF1509	0.36	-0.0
1,539,297	+		GFF1509	0.37	-0.6
1,539,297	+		GFF1509	0.37	-0.0
1,539,305	-		GFF1509	0.37	-0.6
1,539,305	-		GFF1509	0.37	-2.1
1,539,323	+		GFF1509	0.39	-1.4
1,539,323	+		GFF1509	0.39	-0.6
1,539,323	+		GFF1509	0.39	+0.6
1,539,364	-		GFF1509	0.41	-0.2
1,539,364	-		GFF1509	0.41	-2.5
1,539,391	-		GFF1509	0.43	+1.9
1,539,422	+		GFF1509	0.45	-0.7
1,539,455	+		GFF1509	0.47	-1.3
1,539,455	+		GFF1509	0.47	+0.4
1,539,460	+		GFF1509	0.48	+1.5
1,539,461	+		GFF1509	0.48	-1.6
1,539,461	+		GFF1509	0.48	+0.1
1,539,463	-		GFF1509	0.48	+0.1
1,539,463	-		GFF1509	0.48	-0.1
1,539,463	-		GFF1509	0.48	+0.5
1,539,463	-		GFF1509	0.48	+1.8
1,539,463	-		GFF1509	0.48	-0.4
1,539,463	-		GFF1509	0.48	-0.6
1,539,468	-		GFF1509	0.48	-0.3
1,539,469	-		GFF1509	0.48	+0.9
1,539,473	-		GFF1509	0.48	+1.0
1,539,474	+		GFF1509	0.48	+1.2
1,539,474	-		GFF1509	0.48	+0.8
1,539,516	-		GFF1509	0.51	-0.6
1,539,518	+		GFF1509	0.51	+0.2
1,539,554	+		GFF1509	0.54	-1.2
1,539,572	-		GFF1509	0.55	-0.1
1,539,591	+		GFF1509	0.56	-0.0
1,539,591	+		GFF1509	0.56	+0.4
1,539,591	+		GFF1509	0.56	-0.5
1,539,601	+		GFF1509	0.57	-0.5
1,539,601	+		GFF1509	0.57	+0.0
1,539,601	+		GFF1509	0.57	+0.1
1,539,608	+		GFF1509	0.57	-0.3
1,539,609	-		GFF1509	0.57	-1.9
1,539,609	-		GFF1509	0.57	-0.6
1,539,609	-		GFF1509	0.57	+0.1
1,539,616	-		GFF1509	0.58	-0.1
1,539,626	-		GFF1509	0.58	-0.7
1,539,626	-		GFF1509	0.58	+1.1
1,539,645	+		GFF1509	0.60	+0.8
1,539,645	+		GFF1509	0.60	-0.8
1,539,650	+		GFF1509	0.60	-1.8
1,539,650	+		GFF1509	0.60	+0.5
1,539,650	+		GFF1509	0.60	+1.4
1,539,650	+		GFF1509	0.60	+0.5
1,539,653	-		GFF1509	0.60	+0.5
1,539,660	+		GFF1509	0.61	-0.1
1,539,689	+		GFF1509	0.63	+0.1
1,539,697	-		GFF1509	0.63	-0.2
1,539,697	-		GFF1509	0.63	+0.5
1,539,718	+		GFF1509	0.64	-0.1
1,539,721	-		GFF1509	0.65	+0.7
1,539,723	+		GFF1509	0.65	+0.5
1,539,733	+		GFF1509	0.65	-0.5
1,539,733	+		GFF1509	0.65	+1.3
1,539,741	-		GFF1509	0.66	-0.1
1,539,741	-		GFF1509	0.66	-0.1
1,539,741	-		GFF1509	0.66	+0.6
1,539,741	-		GFF1509	0.66	-0.5
1,539,741	-		GFF1509	0.66	+0.4
1,539,749	+		GFF1509	0.67	+0.4
1,539,749	+		GFF1509	0.67	-2.2
1,539,802	+		GFF1509	0.70	-0.2
1,539,804	+		GFF1509	0.70	-1.8
1,539,810	-		GFF1509	0.71	-0.5
1,539,819	-		GFF1509	0.71	+1.5
1,539,828	+		GFF1509	0.72	-0.6
1,539,836	+		GFF1509	0.72	+1.1
1,539,844	-		GFF1509	0.73	+0.8
1,539,846	+		GFF1509	0.73	+0.5
1,539,861	+		GFF1509	0.74	-0.4
1,539,877	-		GFF1509	0.75	-2.3
1,539,893	+		GFF1509	0.76	+1.2
1,539,897	+		GFF1509	0.76	-0.4
1,539,898	+		GFF1509	0.76	+0.5
1,539,898	+		GFF1509	0.76	-0.2
1,539,898	+		GFF1509	0.76	-0.0
1,539,901	-		GFF1509	0.77	+0.4
1,539,901	-		GFF1509	0.77	-0.3
1,539,906	-		GFF1509	0.77	+1.2
1,539,906	-		GFF1509	0.77	+0.0
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