Strain Fitness in Sphingobium sp. HT1-2 around GFF1489

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,512,918	-		GFF1488	0.54	-0.2
1,512,936	+		GFF1488	0.55	-0.6
1,512,943	-		GFF1488	0.56	-2.2
1,512,953	-		GFF1488	0.56	-0.3
1,512,965	-		GFF1488	0.57	+0.1
1,512,969	+		GFF1488	0.57	+0.6
1,512,978	+		GFF1488	0.57	+0.6
1,512,978	+		GFF1488	0.57	+0.6
1,512,986	-		GFF1488	0.58	+0.3
1,513,097	+		GFF1488	0.64	-0.4
1,513,105	-		GFF1488	0.64	+0.1
1,513,139	-		GFF1488	0.66	-0.4
1,513,148	-		GFF1488	0.66	+0.4
1,513,155	+		GFF1488	0.67	+0.8
1,513,205	-		GFF1488	0.69	+0.7
1,513,208	+		GFF1488	0.70	-1.8
1,513,211	-		GFF1488	0.70	-1.1
1,513,211	-		GFF1488	0.70	-1.4
1,513,211	-		GFF1488	0.70	-0.3
1,513,255	+		GFF1488	0.72	+0.7
1,513,271	-		GFF1488	0.73	+0.1
1,513,271	-		GFF1488	0.73	-1.8
1,513,273	+		GFF1488	0.73	+0.4
1,513,281	-		GFF1488	0.74	-2.4
1,513,296	-		GFF1488	0.74	-2.2
1,513,304	+		GFF1488	0.75	-0.2
1,513,312	-		GFF1488	0.75	-0.4
1,513,319	+		GFF1488	0.76	-1.4
1,513,360	+		GFF1488	0.78	+1.2
1,513,368	-		GFF1488	0.78	+0.9
1,513,371	+		GFF1488	0.78	-0.4
1,513,371	+		GFF1488	0.78	-0.5
1,513,371	+		GFF1488	0.78	-1.4
1,513,371	+		GFF1488	0.78	-1.4
1,513,371	+		GFF1488	0.78	-1.0
1,513,379	-		GFF1488	0.79	-1.0
1,513,379	-		GFF1488	0.79	-1.7
1,513,379	-		GFF1488	0.79	-1.6
1,513,379	-		GFF1488	0.79	-1.4
1,513,379	-		GFF1488	0.79	+0.8
1,513,379	-		GFF1488	0.79	+0.1
1,513,379	-		GFF1488	0.79	-0.5
1,513,382	+		GFF1488	0.79	+1.4
1,513,405	-		GFF1488	0.80	-1.2
1,513,415	+		GFF1488	0.81	-0.0
1,513,458	+		GFF1488	0.83	-0.4
1,513,527	+		GFF1488	0.87	-2.0
1,513,563	-		GFF1488	0.88	-0.9
1,513,563	-		GFF1488	0.88	-0.2
1,513,579	+		GFF1488	0.89	-1.1
1,513,587	+		GFF1488	0.90	+0.2
1,513,599	-				-0.5
1,513,599	-				-2.1
1,513,601	+				+0.8
1,513,607	+				-0.0
1,513,661	+				+1.2
1,513,661	-				-1.1
1,513,669	-				+1.0
1,513,669	-				-0.5
1,513,669	-				+0.2
1,513,685	-				-0.1
1,513,708	-				-0.3
1,513,718	-				+0.4
1,513,718	-				-1.4
1,513,749	+				-1.2
1,513,764	-				+0.1
1,513,764	-				-1.3
1,513,777	-				-2.1
1,513,798	+				-0.7
1,513,803	+				-0.2
1,513,806	-				+0.5
1,513,838	+				-0.2
1,513,846	-				-0.4
1,513,847	+				+0.0
1,513,855	-				+0.7
1,513,969	-				-0.8
1,513,971	+				+0.3
1,513,978	-				+0.4
1,513,985	-		GFF1489	0.10	-0.3
1,513,995	+		GFF1489	0.11	+0.8
1,514,003	-		GFF1489	0.12	+0.4
1,514,021	-		GFF1489	0.15	-0.4
1,514,021	-		GFF1489	0.15	-0.5
1,514,043	+		GFF1489	0.17	-1.2
1,514,051	-		GFF1489	0.18	-0.4
1,514,079	-		GFF1489	0.22	-1.2
1,514,091	+		GFF1489	0.23	-0.1
1,514,091	+		GFF1489	0.23	+0.5
1,514,091	+		GFF1489	0.23	-1.4
1,514,091	+		GFF1489	0.23	-1.3
1,514,091	+		GFF1489	0.23	-0.7
1,514,094	-		GFF1489	0.24	-2.1
1,514,094	-		GFF1489	0.24	-0.4
1,514,094	-		GFF1489	0.24	-1.0
1,514,096	+		GFF1489	0.24	-0.8
1,514,096	+		GFF1489	0.24	-1.2
1,514,096	+		GFF1489	0.24	-2.5
1,514,096	+		GFF1489	0.24	-1.6
1,514,096	+		GFF1489	0.24	-0.3
1,514,099	-		GFF1489	0.24	+0.2
1,514,104	-		GFF1489	0.25	+0.0
1,514,104	-		GFF1489	0.25	-0.9
1,514,115	+		GFF1489	0.26	+0.6
1,514,130	-		GFF1489	0.28	-1.2
1,514,130	-		GFF1489	0.28	-0.4
1,514,136	-		GFF1489	0.29	-3.2
1,514,150	-		GFF1489	0.30	-0.9
1,514,179	+		GFF1489	0.34	+0.0
1,514,186	+		GFF1489	0.35	-1.8
1,514,186	+		GFF1489	0.35	+0.2
1,514,197	-		GFF1489	0.36	+0.3
1,514,201	-		GFF1489	0.37	-0.5
1,514,203	+		GFF1489	0.37	-0.9
1,514,211	-		GFF1489	0.38	+0.0
1,514,235	-		GFF1489	0.41	+0.3
1,514,239	-		GFF1489	0.41	-0.0
1,514,240	-		GFF1489	0.41	-0.2
1,514,272	+		GFF1489	0.45	-0.3
1,514,299	-		GFF1489	0.49	-0.4
1,514,306	-		GFF1489	0.49	+1.3
1,514,308	+		GFF1489	0.50	-0.7
1,514,310	-		GFF1489	0.50	-0.7
1,514,311	-		GFF1489	0.50	-0.6
1,514,358	+		GFF1489	0.56	-0.4
1,514,412	+		GFF1489	0.62	+0.1
1,514,426	+		GFF1489	0.64	-0.6
1,514,426	-		GFF1489	0.64	-0.9
1,514,468	-		GFF1489	0.69	-1.0
1,514,470	+		GFF1489	0.69	+0.6
1,514,476	+		GFF1489	0.70	-0.2
1,514,481	+		GFF1489	0.71	+0.9
1,514,537	+		GFF1489	0.78	-1.4
1,514,543	-		GFF1489	0.78	-0.1
1,514,545	-		GFF1489	0.79	+0.1
1,514,575	+		GFF1489	0.82	-1.0
1,514,599	+		GFF1489	0.85	-2.6
1,514,599	+		GFF1489	0.85	+1.4
1,514,616	+		GFF1489	0.87	-0.7
1,514,618	+		GFF1489	0.88	-2.1
1,514,635	+		GFF1489	0.90	+1.3
1,514,635	-		GFF1489	0.90	-1.0
1,514,636	-		GFF1489	0.90	-2.1
1,514,636	-		GFF1489	0.90	+0.2
1,514,659	+				+2.0
1,514,665	+				+0.0
1,514,670	+				+0.4
1,514,670	+				-0.2
1,514,678	-				+0.5
1,514,678	-				-0.8
1,514,714	+				-2.6
1,514,722	-				-0.1
1,514,734	-				-0.1
1,514,769	-				-0.8
1,514,770	+				+0.5
1,514,770	+				-0.2
1,514,778	-				-2.6
1,514,778	-				+0.2
1,514,796	-				+0.2
1,514,824	+				+0.1
1,514,832	-				-0.2
1,514,842	-				+0.1
1,514,850	+				-2.9
1,514,858	-				-1.9
1,514,867	+				-2.3
1,514,875	-				-1.5
1,514,875	-				-2.7
1,514,875	-				-0.9
1,514,875	-				-1.5
1,514,887	+				-1.8
1,514,894	+				-1.2
1,514,909	-				-2.9
1,514,951	-				-2.0
1,514,962	+				-2.4
1,514,984	+		GFF1490	0.11	-2.4
1,515,000	-		GFF1490	0.13	-2.9
1,515,000	-		GFF1490	0.13	-2.2
1,515,000	-		GFF1490	0.13	-2.4
1,515,033	+		GFF1490	0.15	-2.5
1,515,033	+		GFF1490	0.15	-2.0
1,515,033	+		GFF1490	0.15	-1.2
1,515,033	+		GFF1490	0.15	-2.5
1,515,033	+		GFF1490	0.15	-1.1
1,515,033	+		GFF1490	0.15	-1.5
1,515,033	+		GFF1490	0.15	-1.2
1,515,033	+		GFF1490	0.15	-2.0
1,515,033	+		GFF1490	0.15	-1.8
1,515,033	+		GFF1490	0.15	-2.4
1,515,041	-		GFF1490	0.16	-1.7
1,515,041	-		GFF1490	0.16	-2.4
1,515,041	-		GFF1490	0.16	-0.4
1,515,041	-		GFF1490	0.16	-2.0
1,515,041	-		GFF1490	0.16	-1.2
1,515,041	-		GFF1490	0.16	-2.1
1,515,041	-		GFF1490	0.16	+0.2
1,515,041	-		GFF1490	0.16	-2.5
1,515,041	-		GFF1490	0.16	-4.1
1,515,053	-		GFF1490	0.17	-1.6
1,515,058	-		GFF1490	0.17	-2.2
1,515,064	-		GFF1490	0.18	-2.6
1,515,115	+		GFF1490	0.22	-1.8
1,515,157	+		GFF1490	0.25	-3.3
1,515,158	+		GFF1490	0.25	-2.5
1,515,195	+		GFF1490	0.28	-1.8
1,515,195	-		GFF1490	0.28	-2.3
1,515,195	-		GFF1490	0.28	-1.6
1,515,197	+		GFF1490	0.28	-2.6
1,515,198	-		GFF1490	0.28	-1.9
1,515,203	-		GFF1490	0.29	-1.7
1,515,203	-		GFF1490	0.29	-2.6
1,515,209	+		GFF1490	0.29	-1.5
1,515,209	+		GFF1490	0.29	-1.4
1,515,222	+		GFF1490	0.30	-1.2
1,515,231	+		GFF1490	0.31	-2.6
1,515,236	-		GFF1490	0.31	-3.1
1,515,239	-		GFF1490	0.32	-2.1
1,515,239	-		GFF1490	0.32	-2.0
1,515,241	-		GFF1490	0.32	-2.2
1,515,252	+		GFF1490	0.33	-0.3
1,515,252	+		GFF1490	0.33	-1.9
1,515,252	+		GFF1490	0.33	-1.4
1,515,260	-		GFF1490	0.33	-2.9
1,515,265	+		GFF1490	0.34	-1.4
1,515,294	+		GFF1490	0.36	-1.7
1,515,299	+		GFF1490	0.37	-1.8
1,515,302	-		GFF1490	0.37	-2.7
1,515,307	+		GFF1490	0.37	-1.7
1,515,361	+		GFF1490	0.42	-1.0
1,515,369	+		GFF1490	0.42	-2.4
1,515,369	+		GFF1490	0.42	-2.0
1,515,377	-		GFF1490	0.43	-0.7
1,515,377	-		GFF1490	0.43	-0.9
1,515,377	-		GFF1490	0.43	-1.4
1,515,377	-		GFF1490	0.43	-1.4
1,515,403	-		GFF1490	0.45	-2.9
1,515,403	-		GFF1490	0.45	-2.4
1,515,403	-		GFF1490	0.45	-2.9
1,515,427	-		GFF1490	0.47	-2.7
1,515,429	+		GFF1490	0.47	-2.6
1,515,432	+		GFF1490	0.47	-1.6
1,515,463	-		GFF1490	0.50	-2.6
1,515,474	-		GFF1490	0.51	-0.2
1,515,509	-		GFF1490	0.53	-2.0
1,515,509	-		GFF1490	0.53	-2.2
1,515,509	-		GFF1490	0.53	-1.5
1,515,528	+		GFF1490	0.55	-2.4
1,515,528	+		GFF1490	0.55	-1.2
1,515,536	-		GFF1490	0.56	-2.2
1,515,540	+		GFF1490	0.56	-1.9
1,515,553	-		GFF1490	0.57	-2.2
1,515,566	-		GFF1490	0.58	-0.4
1,515,579	+		GFF1490	0.59	-2.1
1,515,587	-		GFF1490	0.60	-2.2
1,515,587	-		GFF1490	0.60	-2.2
1,515,587	-		GFF1490	0.60	-2.5
1,515,602	+		GFF1490	0.61	-1.9
1,515,609	-		GFF1490	0.61	-2.6
1,515,619	+		GFF1490	0.62	-1.2
1,515,629	+		GFF1490	0.63	+0.1
1,515,629	+		GFF1490	0.63	-1.6
1,515,629	+		GFF1490	0.63	-1.2
1,515,636	+		GFF1490	0.64	-2.5
1,515,637	-		GFF1490	0.64	-2.3
1,515,637	-		GFF1490	0.64	-1.4
1,515,637	-		GFF1490	0.64	-1.5
1,515,637	-		GFF1490	0.64	-1.8
1,515,642	-		GFF1490	0.64	-0.1
1,515,644	+		GFF1490	0.64	-1.8
1,515,646	+		GFF1490	0.64	-2.6
1,515,646	+		GFF1490	0.64	-2.8
1,515,664	+		GFF1490	0.66	-1.7
1,515,665	+		GFF1490	0.66	-2.7
1,515,672	-		GFF1490	0.66	-1.0
1,515,683	+		GFF1490	0.67	-2.4
1,515,691	-		GFF1490	0.68	-3.2
1,515,707	+		GFF1490	0.69	-1.5
1,515,715	+		GFF1490	0.70	-1.2