Strain Fitness in Sphingobium sp. HT1-2 around GFF1476

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,501,752	-		GFF1473	0.89	-0.1
1,501,754	+		GFF1473	0.89	-0.8
1,501,754	+		GFF1473	0.89	+0.6
1,501,754	+		GFF1473	0.89	-0.7
1,501,754	+		GFF1473	0.89	-1.0
1,501,762	-				-1.5
1,501,762	-				+1.1
1,501,762	-				-0.7
1,501,762	-				-0.4
1,501,819	+				-1.5
1,501,841	-				+0.5
1,501,859	+				-0.1
1,501,887	+				-1.0
1,501,890	+				-0.7
1,501,898	-				+0.3
1,501,898	-				-0.5
1,501,904	+				+0.3
1,501,904	+				+0.5
1,501,904	+				+0.0
1,501,904	+				+0.2
1,501,904	+				-0.1
1,501,904	+				-1.6
1,501,912	-				+0.7
1,501,950	+				+1.1
1,501,957	-				-0.3
1,501,966	+		GFF1474	0.13	+0.6
1,501,966	+		GFF1474	0.13	+0.7
1,501,974	-		GFF1474	0.17	+0.0
1,501,985	+		GFF1474	0.22	-0.4
1,501,995	+		GFF1474	0.27	-1.5
1,502,003	-		GFF1474	0.31	-0.5
1,502,003	-		GFF1474	0.31	-3.5
1,502,024	+		GFF1474	0.41	+1.0
1,502,024	+		GFF1474	0.41	-1.5
1,502,024	+		GFF1474	0.41	+0.2
1,502,024	+		GFF1474	0.41	-0.7
1,502,024	+		GFF1474	0.41	-1.0
1,502,024	+		GFF1474	0.41	-1.0
1,502,032	-		GFF1474	0.45	-0.8
1,502,032	-		GFF1474	0.45	+0.4
1,502,032	-		GFF1474	0.45	+0.7
1,502,032	-		GFF1474	0.45	-0.3
1,502,032	-		GFF1474	0.45	-2.0
1,502,032	-		GFF1474	0.45	-1.4
1,502,060	+		GFF1474	0.58	+1.9
1,502,060	+		GFF1474	0.58	+0.4
1,502,060	+		GFF1474	0.58	-0.4
1,502,060	+		GFF1474	0.58	-1.0
1,502,060	+		GFF1474	0.58	-0.6
1,502,060	+		GFF1474	0.58	-0.3
1,502,065	+		GFF1474	0.61	+0.9
1,502,065	+		GFF1474	0.61	-0.3
1,502,066	+		GFF1474	0.61	-1.6
1,502,068	-		GFF1474	0.62	+0.1
1,502,068	-		GFF1474	0.62	-0.8
1,502,072	+		GFF1474	0.64	-1.2
1,502,073	-		GFF1474	0.65	-1.4
1,502,073	-		GFF1474	0.65	+0.7
1,502,073	-		GFF1474	0.65	-0.7
1,502,084	+		GFF1474	0.70	-0.5
1,502,101	+		GFF1474	0.78	+0.8
1,502,119	+		GFF1474	0.87	-0.4
1,502,119	+		GFF1474	0.87	-2.0
1,502,137	+				+0.3
1,502,139	-				-0.1
1,502,145	-				+0.5
1,502,168	+				-0.4
1,502,175	+				-1.3
1,502,175	+				-0.2
1,502,175	+				+0.1
1,502,175	+				-1.6
1,502,176	-				-0.0
1,502,180	+				+0.0
1,502,180	+				+0.3
1,502,180	+				-2.5
1,502,183	-				-0.2
1,502,183	-				+1.0
1,502,183	-				-1.5
1,502,183	-				+0.6
1,502,183	-				+0.9
1,502,188	-				+0.3
1,502,240	-				-1.0
1,502,250	-				+0.8
1,502,250	-				-2.4
1,502,254	-				-0.0
1,502,258	+				+0.3
1,502,268	+				+0.9
1,502,286	-				-1.0
1,502,288	+				-1.2
1,502,294	-				+0.0
1,502,297	+				-1.1
1,502,307	+				+0.2
1,502,307	+				+0.8
1,502,308	+				-0.4
1,502,314	+				-1.6
1,502,316	-				-0.0
1,502,343	+		GFF1475	0.10	-1.4
1,502,343	+		GFF1475	0.10	-0.3
1,502,343	+		GFF1475	0.10	+0.3
1,502,343	+		GFF1475	0.10	+1.1
1,502,348	+		GFF1475	0.11	+0.0
1,502,351	-		GFF1475	0.12	+0.6
1,502,351	-		GFF1475	0.12	+0.2
1,502,353	+		GFF1475	0.12	-0.0
1,502,353	+		GFF1475	0.12	-0.6
1,502,356	-		GFF1475	0.13	-0.5
1,502,358	+		GFF1475	0.14	+0.5
1,502,358	+		GFF1475	0.14	-1.6
1,502,358	+		GFF1475	0.14	-1.5
1,502,358	+		GFF1475	0.14	-0.5
1,502,358	+		GFF1475	0.14	+0.8
1,502,358	+		GFF1475	0.14	-0.9
1,502,358	+		GFF1475	0.14	-0.2
1,502,358	+		GFF1475	0.14	+0.5
1,502,366	-		GFF1475	0.15	+1.2
1,502,366	-		GFF1475	0.15	+0.8
1,502,366	-		GFF1475	0.15	-0.6
1,502,366	-		GFF1475	0.15	+0.6
1,502,366	-		GFF1475	0.15	-1.2
1,502,366	-		GFF1475	0.15	-0.7
1,502,366	-		GFF1475	0.15	-1.5
1,502,366	-		GFF1475	0.15	+0.5
1,502,366	-		GFF1475	0.15	+0.9
1,502,366	-		GFF1475	0.15	-0.3
1,502,366	-		GFF1475	0.15	+0.4
1,502,366	-		GFF1475	0.15	+0.4
1,502,366	-		GFF1475	0.15	-1.2
1,502,368	+		GFF1475	0.16	+0.1
1,502,376	-		GFF1475	0.18	-0.7
1,502,378	+		GFF1475	0.18	-0.8
1,502,378	+		GFF1475	0.18	-0.0
1,502,378	+		GFF1475	0.18	+0.2
1,502,384	+		GFF1475	0.19	+0.1
1,502,386	-		GFF1475	0.20	+0.1
1,502,386	-		GFF1475	0.20	+0.5
1,502,386	-		GFF1475	0.20	+0.8
1,502,386	-		GFF1475	0.20	-0.7
1,502,392	-		GFF1475	0.21	+0.4
1,502,402	-		GFF1475	0.23	+1.0
1,502,404	+		GFF1475	0.24	-1.0
1,502,411	-		GFF1475	0.25	-0.1
1,502,417	-		GFF1475	0.27	-1.5
1,502,422	-		GFF1475	0.28	-0.6
1,502,422	-		GFF1475	0.28	+0.4
1,502,425	+		GFF1475	0.28	-0.1
1,502,459	+		GFF1475	0.36	+0.8
1,502,459	+		GFF1475	0.36	-0.0
1,502,459	+		GFF1475	0.36	+0.5
1,502,459	+		GFF1475	0.36	+0.2
1,502,459	+		GFF1475	0.36	-0.5
1,502,459	+		GFF1475	0.36	-0.6
1,502,459	+		GFF1475	0.36	-0.3
1,502,467	-		GFF1475	0.38	-0.1
1,502,467	-		GFF1475	0.38	+0.5
1,502,470	+		GFF1475	0.38	-2.0
1,502,478	+		GFF1475	0.40	-1.4
1,502,478	+		GFF1475	0.40	-1.2
1,502,478	-		GFF1475	0.40	+0.5
1,502,482	-		GFF1475	0.41	-0.8
1,502,483	+		GFF1475	0.41	+0.6
1,502,483	+		GFF1475	0.41	-0.2
1,502,483	+		GFF1475	0.41	-0.7
1,502,483	+		GFF1475	0.41	+0.3
1,502,483	+		GFF1475	0.41	+0.5
1,502,491	-		GFF1475	0.43	-0.5
1,502,491	-		GFF1475	0.43	-1.0
1,502,491	-		GFF1475	0.43	-1.4
1,502,491	-		GFF1475	0.43	+0.0
1,502,491	-		GFF1475	0.43	-0.0
1,502,491	-		GFF1475	0.43	-1.0
1,502,495	+		GFF1475	0.44	-0.5
1,502,505	+		GFF1475	0.46	-0.5
1,502,508	-		GFF1475	0.46	-1.9
1,502,529	+		GFF1475	0.51	-2.0
1,502,529	+		GFF1475	0.51	+0.9
1,502,529	+		GFF1475	0.51	-0.6
1,502,529	+		GFF1475	0.51	+0.5
1,502,529	+		GFF1475	0.51	-1.0
1,502,529	+		GFF1475	0.51	-0.5
1,502,529	+		GFF1475	0.51	-0.8
1,502,529	+		GFF1475	0.51	-1.2
1,502,529	+		GFF1475	0.51	+0.3
1,502,529	+		GFF1475	0.51	+1.4
1,502,531	+		GFF1475	0.52	-0.6
1,502,531	+		GFF1475	0.52	-0.1
1,502,531	+		GFF1475	0.52	+0.1
1,502,531	+		GFF1475	0.52	-0.2
1,502,531	+		GFF1475	0.52	-1.5
1,502,531	+		GFF1475	0.52	+0.8
1,502,531	+		GFF1475	0.52	-1.7
1,502,534	+		GFF1475	0.52	-0.4
1,502,537	-		GFF1475	0.53	+0.7
1,502,537	-		GFF1475	0.53	+0.5
1,502,537	-		GFF1475	0.53	-1.8
1,502,537	-		GFF1475	0.53	-1.2
1,502,537	-		GFF1475	0.53	+1.2
1,502,537	-		GFF1475	0.53	-0.5
1,502,537	-		GFF1475	0.53	+0.4
1,502,537	-		GFF1475	0.53	+0.0
1,502,537	-		GFF1475	0.53	-0.9
1,502,537	-		GFF1475	0.53	-0.6
1,502,539	-		GFF1475	0.53	+0.7
1,502,539	-		GFF1475	0.53	+0.5
1,502,539	-		GFF1475	0.53	-0.3
1,502,554	+		GFF1475	0.57	-1.8
1,502,554	+		GFF1475	0.57	-1.5
1,502,554	+		GFF1475	0.57	+0.8
1,502,554	+		GFF1475	0.57	-0.4
1,502,559	+		GFF1475	0.58	-0.3
1,502,559	+		GFF1475	0.58	-0.5
1,502,559	+		GFF1475	0.58	-0.6
1,502,559	+		GFF1475	0.58	-0.6
1,502,559	+		GFF1475	0.58	-0.6
1,502,559	+		GFF1475	0.58	+0.2
1,502,559	+		GFF1475	0.58	-0.7
1,502,559	+		GFF1475	0.58	+1.6
1,502,559	+		GFF1475	0.58	-1.5
1,502,559	+		GFF1475	0.58	-0.3
1,502,562	-		GFF1475	0.58	-1.1
1,502,562	-		GFF1475	0.58	-1.7
1,502,562	-		GFF1475	0.58	+0.0
1,502,562	-		GFF1475	0.58	-2.0
1,502,564	+		GFF1475	0.59	-0.0
1,502,567	-		GFF1475	0.59	-0.4
1,502,567	-		GFF1475	0.59	-1.8
1,502,567	-		GFF1475	0.59	+0.1
1,502,567	-		GFF1475	0.59	-0.8
1,502,567	-		GFF1475	0.59	+0.6
1,502,572	-		GFF1475	0.61	-1.7
1,502,592	+		GFF1475	0.65	-0.5
1,502,592	+		GFF1475	0.65	-1.4
1,502,592	+		GFF1475	0.65	-1.2
1,502,592	+		GFF1475	0.65	-0.6
1,502,593	+		GFF1475	0.65	+0.9
1,502,600	+		GFF1475	0.67	+1.3
1,502,600	+		GFF1475	0.67	-0.1
1,502,600	+		GFF1475	0.67	-1.3
1,502,600	-		GFF1475	0.67	-1.3
1,502,600	-		GFF1475	0.67	+0.4
1,502,600	-		GFF1475	0.67	-0.2
1,502,600	-		GFF1475	0.67	-1.1
1,502,600	-		GFF1475	0.67	+0.6
1,502,600	-		GFF1475	0.67	-1.4
1,502,600	-		GFF1475	0.67	-0.1
1,502,600	-		GFF1475	0.67	-0.8
1,502,600	-		GFF1475	0.67	-0.8
1,502,600	-		GFF1475	0.67	-2.0
1,502,600	-		GFF1475	0.67	+1.0
1,502,601	-		GFF1475	0.67	+1.1
1,502,608	-		GFF1475	0.68	+0.4
1,502,608	-		GFF1475	0.68	-0.1
1,502,608	-		GFF1475	0.68	-0.7
1,502,608	-		GFF1475	0.68	+0.6
1,502,608	-		GFF1475	0.68	+0.1
1,502,608	-		GFF1475	0.68	+0.2
1,502,627	+		GFF1475	0.73	+0.4
1,502,642	+		GFF1475	0.76	+0.5
1,502,642	+		GFF1475	0.76	+1.2
1,502,652	+		GFF1475	0.78	+0.4
1,502,652	+		GFF1475	0.78	+0.3
1,502,655	-		GFF1475	0.79	-0.6
1,502,655	-		GFF1475	0.79	-2.0
1,502,660	-		GFF1475	0.80	+0.1
1,502,660	-		GFF1475	0.80	-1.2
1,502,665	-		GFF1475	0.81	-1.7
1,502,686	-		GFF1475	0.86	+2.2
1,502,694	-		GFF1475	0.87	-0.4
1,502,708	+				+0.7
1,502,708	+				+0.3
1,502,715	-				-0.7
1,502,720	+				+0.1
1,502,720	+				-2.2
1,502,728	-				+0.1
1,502,733	+				+0.3
1,502,758	-				+1.3
1,502,768	+				+1.0
1,502,778	+				-0.3
1,502,793	-				+0.2
1,502,793	-				+0.3
1,502,793	-				-1.3
1,502,800	+				-0.9
1,502,808	-				-0.4
1,502,813	-				+0.1
1,502,828	-				-0.3
1,502,841	+		GFF1476	0.10	-0.3
1,502,870	-		GFF1476	0.14	-0.3
1,502,893	-		GFF1476	0.16	-1.6
1,502,905	-		GFF1476	0.18	-0.2
1,502,907	+		GFF1476	0.18	-2.8
1,502,915	-		GFF1476	0.19	+0.3
1,502,924	-		GFF1476	0.20	-1.5
1,502,924	-		GFF1476	0.20	-1.1
1,502,924	-		GFF1476	0.20	+0.4
1,502,924	-		GFF1476	0.20	+0.1
1,502,946	-		GFF1476	0.23	-1.4
1,502,948	+		GFF1476	0.23	-0.6
1,502,953	+		GFF1476	0.23	+0.4
1,502,953	+		GFF1476	0.23	+1.6
1,502,953	+		GFF1476	0.23	-0.8
1,502,953	+		GFF1476	0.23	-0.4
1,502,956	-		GFF1476	0.24	-0.1
1,502,956	-		GFF1476	0.24	+0.1
1,502,956	-		GFF1476	0.24	+0.2
1,502,961	-		GFF1476	0.24	+0.3
1,502,961	-		GFF1476	0.24	-1.2
1,502,961	-		GFF1476	0.24	+0.0
1,502,961	-		GFF1476	0.24	-0.4
1,502,961	-		GFF1476	0.24	-2.5
1,502,961	-		GFF1476	0.24	-0.8
1,502,961	-		GFF1476	0.24	+0.4
1,502,963	+		GFF1476	0.25	-0.7
1,502,963	+		GFF1476	0.25	-2.0
1,502,963	+		GFF1476	0.25	-1.8
1,502,971	-		GFF1476	0.26	+0.8
1,502,971	-		GFF1476	0.26	+0.8
1,502,991	+		GFF1476	0.28	-2.0
1,503,001	+		GFF1476	0.29	-1.4
1,503,009	-		GFF1476	0.30	+0.5
1,503,009	-		GFF1476	0.30	+0.2
1,503,009	-		GFF1476	0.30	-0.4
1,503,040	+		GFF1476	0.34	-0.4
1,503,045	+		GFF1476	0.34	-0.9
1,503,048	-		GFF1476	0.34	-0.5
1,503,049	+		GFF1476	0.35	+0.3
1,503,057	+		GFF1476	0.36	-0.0
1,503,123	+		GFF1476	0.43	+0.8
1,503,129	+		GFF1476	0.44	+0.1
1,503,131	-		GFF1476	0.44	-0.7
1,503,131	-		GFF1476	0.44	-0.6
1,503,133	-		GFF1476	0.44	-0.3
1,503,136	+		GFF1476	0.45	+0.9
1,503,144	-		GFF1476	0.46	+0.2
1,503,144	-		GFF1476	0.46	-1.4
1,503,144	-		GFF1476	0.46	-0.7
1,503,149	+		GFF1476	0.46	-1.2
1,503,157	-		GFF1476	0.47	-1.4
1,503,167	-		GFF1476	0.48	+0.4
1,503,191	-		GFF1476	0.51	-1.3
1,503,249	-		GFF1476	0.58	+0.3
1,503,256	+		GFF1476	0.59	+0.3
1,503,256	+		GFF1476	0.59	+0.8
1,503,290	+		GFF1476	0.63	-0.4
1,503,297	+		GFF1476	0.63	-0.4
1,503,312	-		GFF1476	0.65	-0.2
1,503,332	+		GFF1476	0.67	-0.9
1,503,340	-		GFF1476	0.68	+0.2
1,503,402	-		GFF1476	0.76	-1.2
1,503,402	-		GFF1476	0.76	-0.1
1,503,402	-		GFF1476	0.76	-1.6
1,503,402	-		GFF1476	0.76	-1.0
1,503,414	+		GFF1476	0.77	-0.1
1,503,421	-		GFF1476	0.78	+0.3
1,503,464	-		GFF1476	0.83	+0.5
1,503,464	-		GFF1476	0.83	+0.0
1,503,469	+		GFF1476	0.83	+1.8
1,503,469	+		GFF1476	0.83	-0.4
1,503,470	-		GFF1476	0.84	-0.4
1,503,477	+		GFF1476	0.84	+0.9
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