Strain Fitness in Sphingobium sp. HT1-2 around GFF1449

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,475,508	-				+0.4
1,475,517	+				-0.2
1,475,537	+				-0.8
1,475,547	+				+0.0
1,475,555	-				-0.2
1,475,557	+				+0.3
1,475,557	+				+0.4
1,475,561	+				+0.6
1,475,561	-				+0.1
1,475,562	+				-0.1
1,475,565	-				-1.3
1,475,572	+				-0.7
1,475,580	-				-0.1
1,475,582	+				+0.5
1,475,582	+				+1.0
1,475,592	+		GFF1448	0.11	+0.5
1,475,593	+		GFF1448	0.11	-0.1
1,475,593	+		GFF1448	0.11	-0.3
1,475,601	-		GFF1448	0.12	-0.2
1,475,605	+		GFF1448	0.13	-0.9
1,475,605	+		GFF1448	0.13	-0.2
1,475,636	-		GFF1448	0.17	-0.8
1,475,644	+		GFF1448	0.19	-0.4
1,475,657	-		GFF1448	0.21	+0.0
1,475,659	+		GFF1448	0.21	+0.2
1,475,659	+		GFF1448	0.21	+0.3
1,475,667	-		GFF1448	0.22	+1.2
1,475,667	-		GFF1448	0.22	-1.5
1,475,667	-		GFF1448	0.22	-0.5
1,475,667	-		GFF1448	0.22	+0.0
1,475,682	+		GFF1448	0.24	-1.7
1,475,690	-		GFF1448	0.26	-1.1
1,475,690	-		GFF1448	0.26	-0.3
1,475,694	+		GFF1448	0.26	-1.4
1,475,707	-		GFF1448	0.28	-1.4
1,475,732	+		GFF1448	0.32	-1.6
1,475,740	-		GFF1448	0.33	-0.4
1,475,749	+		GFF1448	0.35	+0.8
1,475,749	+		GFF1448	0.35	-0.2
1,475,749	+		GFF1448	0.35	+1.4
1,475,757	-		GFF1448	0.36	-0.3
1,475,757	-		GFF1448	0.36	+0.4
1,475,757	-		GFF1448	0.36	-1.8
1,475,757	-		GFF1448	0.36	-0.6
1,475,757	-		GFF1448	0.36	-0.6
1,475,757	-		GFF1448	0.36	-0.9
1,475,758	+		GFF1448	0.36	-0.4
1,475,781	-		GFF1448	0.40	-1.3
1,475,788	+		GFF1448	0.41	-1.2
1,475,825	+		GFF1448	0.46	-1.3
1,475,846	+		GFF1448	0.50	+0.9
1,475,849	-		GFF1448	0.50	-1.5
1,475,852	-		GFF1448	0.51	-1.8
1,475,871	-		GFF1448	0.53	-0.8
1,475,887	-		GFF1448	0.56	-1.6
1,475,890	+		GFF1448	0.56	-0.8
1,475,906	+		GFF1448	0.59	-0.9
1,475,906	-		GFF1448	0.59	+0.3
1,475,911	-		GFF1448	0.60	+0.4
1,475,911	-		GFF1448	0.60	-0.4
1,475,955	-		GFF1448	0.66	-1.3
1,475,981	+		GFF1448	0.70	+0.2
1,475,989	-		GFF1448	0.72	+0.5
1,476,009	+		GFF1448	0.75	+0.1
1,476,009	+		GFF1448	0.75	-1.7
1,476,023	+		GFF1448	0.77	+1.5
1,476,023	+		GFF1448	0.77	-2.7
1,476,023	+		GFF1448	0.77	+0.4
1,476,031	-		GFF1448	0.78	-0.1
1,476,034	+		GFF1448	0.78	-1.8
1,476,041	-		GFF1448	0.80	-1.2
1,476,042	-		GFF1448	0.80	-1.1
1,476,065	+		GFF1448	0.83	-0.5
1,476,085	-		GFF1448	0.86	-0.0
1,476,091	+		GFF1448	0.87	-0.6
1,476,100	+		GFF1448	0.89	+0.5
1,476,187	-				+0.2
1,476,193	+				-0.5
1,476,196	-				-0.3
1,476,198	+				-1.2
1,476,198	+				+0.4
1,476,198	+				-1.1
1,476,198	+				+1.0
1,476,198	+				-1.7
1,476,198	+				-0.7
1,476,198	+				-1.2
1,476,206	-				-0.2
1,476,206	-				-2.0
1,476,206	-				-1.4
1,476,206	-				+0.2
1,476,208	-				-1.0
1,476,214	+				+0.6
1,476,214	+				+0.4
1,476,214	+				-0.1
1,476,214	+				+0.1
1,476,219	+				-1.1
1,476,222	-				-0.4
1,476,222	-				+0.9
1,476,224	+				-0.9
1,476,229	+				-0.1
1,476,252	+				+1.2
1,476,260	-				-0.6
1,476,308	-				-2.9
1,476,334	-				-0.2
1,476,354	+				+0.8
1,476,354	+				+0.1
1,476,356	+				-0.6
1,476,362	-				+0.0
1,476,362	-				+0.6
1,476,383	-				+0.4
1,476,391	-				-0.2
1,476,405	+				+0.3
1,476,410	+				+0.4
1,476,410	+				+0.8
1,476,413	-				-0.5
1,476,413	-				-0.2
1,476,413	-				-0.6
1,476,413	-				+0.9
1,476,413	-				-0.0
1,476,418	-				+0.2
1,476,418	-				+0.7
1,476,418	-				+1.0
1,476,429	+				-0.4
1,476,444	-				-0.3
1,476,455	-				-0.9
1,476,464	+				+0.9
1,476,464	+				+0.9
1,476,471	-				-2.2
1,476,471	-				-0.5
1,476,471	-				-1.4
1,476,481	-				+1.0
1,476,514	+				-0.1
1,476,517	-				-0.8
1,476,528	+				+0.3
1,476,532	+				-1.0
1,476,532	+				+0.2
1,476,532	+				+0.1
1,476,540	+				+0.6
1,476,540	-				-0.0
1,476,540	-				+0.4
1,476,577	+		GFF1449	0.11	+0.8
1,476,603	-		GFF1449	0.13	-1.1
1,476,653	+		GFF1449	0.16	+0.1
1,476,653	+		GFF1449	0.16	-0.1
1,476,667	-		GFF1449	0.17	-2.1
1,476,694	-		GFF1449	0.19	+0.2
1,476,694	-		GFF1449	0.19	+0.1
1,476,709	+		GFF1449	0.20	-2.1
1,476,709	+		GFF1449	0.20	+0.5
1,476,709	+		GFF1449	0.20	-0.4
1,476,709	+		GFF1449	0.20	-1.5
1,476,717	-		GFF1449	0.21	-0.0
1,476,717	-		GFF1449	0.21	+0.5
1,476,717	-		GFF1449	0.21	-0.9
1,476,718	+		GFF1449	0.21	+0.7
1,476,718	+		GFF1449	0.21	-0.5
1,476,723	+		GFF1449	0.21	+0.5
1,476,723	+		GFF1449	0.21	-1.7
1,476,723	+		GFF1449	0.21	-0.9
1,476,728	+		GFF1449	0.21	+0.3
1,476,754	-		GFF1449	0.23	-0.4
1,476,765	+		GFF1449	0.24	-0.2
1,476,765	+		GFF1449	0.24	-1.0
1,476,770	+		GFF1449	0.24	+0.2
1,476,770	+		GFF1449	0.24	+0.3
1,476,770	+		GFF1449	0.24	-1.2
1,476,770	+		GFF1449	0.24	-0.7
1,476,773	-		GFF1449	0.25	-1.4
1,476,773	-		GFF1449	0.25	+1.2
1,476,776	+		GFF1449	0.25	-0.2
1,476,778	-		GFF1449	0.25	+0.4
1,476,822	+		GFF1449	0.28	-0.3
1,476,834	+		GFF1449	0.29	+1.0
1,476,834	+		GFF1449	0.29	-0.2
1,476,842	-		GFF1449	0.29	-0.6
1,476,847	-		GFF1449	0.30	-1.0
1,476,847	-		GFF1449	0.30	-1.5
1,476,875	+		GFF1449	0.32	-0.3
1,476,875	+		GFF1449	0.32	+1.0
1,476,875	+		GFF1449	0.32	+1.0
1,476,883	-		GFF1449	0.32	-1.9
1,476,883	-		GFF1449	0.32	+0.8
1,476,903	-		GFF1449	0.34	-0.8
1,476,934	+		GFF1449	0.36	-0.6
1,476,936	-		GFF1449	0.36	-0.4
1,476,949	-		GFF1449	0.37	+0.6
1,476,952	+		GFF1449	0.37	-0.4
1,476,960	-		GFF1449	0.38	-0.7
1,476,960	-		GFF1449	0.38	-1.7
1,476,976	-		GFF1449	0.39	-0.8
1,476,981	+		GFF1449	0.39	-0.0
1,476,981	+		GFF1449	0.39	+0.4
1,476,981	+		GFF1449	0.39	+0.2
1,476,984	-		GFF1449	0.39	-1.0
1,476,984	-		GFF1449	0.39	-1.2
1,476,989	-		GFF1449	0.40	+0.5
1,476,991	-		GFF1449	0.40	-0.2
1,476,995	-		GFF1449	0.40	+0.3
1,477,002	+		GFF1449	0.41	-0.8
1,477,020	+		GFF1449	0.42	+0.4
1,477,036	+		GFF1449	0.43	+0.1
1,477,041	+		GFF1449	0.43	-1.1
1,477,041	+		GFF1449	0.43	-0.4
1,477,083	-		GFF1449	0.46	+0.3
1,477,094	-		GFF1449	0.47	-0.8
1,477,109	-		GFF1449	0.48	-0.5
1,477,132	+		GFF1449	0.50	+0.2
1,477,197	+		GFF1449	0.54	-1.6
1,477,202	+		GFF1449	0.55	+0.6
1,477,202	+		GFF1449	0.55	+0.0
1,477,202	+		GFF1449	0.55	+0.3
1,477,202	+		GFF1449	0.55	+0.2
1,477,202	+		GFF1449	0.55	+1.3
1,477,210	-		GFF1449	0.55	+0.1
1,477,210	-		GFF1449	0.55	+0.1
1,477,210	-		GFF1449	0.55	+0.3
1,477,210	-		GFF1449	0.55	+0.4
1,477,210	-		GFF1449	0.55	-0.2
1,477,266	+		GFF1449	0.59	-0.6
1,477,309	-		GFF1449	0.62	-0.1
1,477,319	+		GFF1449	0.63	+0.4
1,477,319	+		GFF1449	0.63	-1.0
1,477,319	+		GFF1449	0.63	-0.6
1,477,319	+		GFF1449	0.63	+1.1
1,477,319	+		GFF1449	0.63	-0.1
1,477,319	+		GFF1449	0.63	-0.4
1,477,319	+		GFF1449	0.63	+0.2
1,477,319	+		GFF1449	0.63	+0.6
1,477,319	+		GFF1449	0.63	+0.4
1,477,319	+		GFF1449	0.63	-0.8
1,477,324	+		GFF1449	0.63	-0.0
1,477,324	+		GFF1449	0.63	+0.8
1,477,324	+		GFF1449	0.63	+0.5
1,477,327	-		GFF1449	0.63	+0.4
1,477,327	-		GFF1449	0.63	-0.4
1,477,327	-		GFF1449	0.63	+0.4
1,477,327	-		GFF1449	0.63	-0.6
1,477,327	-		GFF1449	0.63	-0.6
1,477,327	-		GFF1449	0.63	-1.0
1,477,327	-		GFF1449	0.63	-1.5
1,477,327	-		GFF1449	0.63	+1.0
1,477,343	-		GFF1449	0.64	-1.6
1,477,343	-		GFF1449	0.64	-2.5
1,477,354	+		GFF1449	0.65	+0.4
1,477,354	+		GFF1449	0.65	-0.3
1,477,362	-		GFF1449	0.66	+0.0
1,477,362	-		GFF1449	0.66	-0.1
1,477,366	+		GFF1449	0.66	+0.2
1,477,419	-		GFF1449	0.70	-1.3
1,477,425	+		GFF1449	0.70	-1.5
1,477,434	+		GFF1449	0.71	+1.4
1,477,434	+		GFF1449	0.71	+1.3
1,477,434	+		GFF1449	0.71	-0.7
1,477,434	+		GFF1449	0.71	-0.8
1,477,442	-		GFF1449	0.71	-0.0
1,477,442	-		GFF1449	0.71	-1.2
1,477,450	+		GFF1449	0.72	-0.3
1,477,492	+		GFF1449	0.75	-1.6
1,477,492	+		GFF1449	0.75	-1.1
1,477,492	+		GFF1449	0.75	-1.0
1,477,492	+		GFF1449	0.75	-0.4
1,477,500	-		GFF1449	0.75	+0.1
1,477,500	-		GFF1449	0.75	+0.1
1,477,502	+		GFF1449	0.75	+0.6
1,477,510	-		GFF1449	0.76	-1.7
1,477,514	+		GFF1449	0.76	+0.7
1,477,514	+		GFF1449	0.76	-0.4
1,477,514	+		GFF1449	0.76	-0.1
1,477,514	+		GFF1449	0.76	+0.2
1,477,514	+		GFF1449	0.76	-0.7
1,477,514	+		GFF1449	0.76	+1.0
1,477,514	+		GFF1449	0.76	-0.5
1,477,514	+		GFF1449	0.76	-0.3
1,477,520	-		GFF1449	0.77	-1.4
1,477,522	-		GFF1449	0.77	+0.5
1,477,522	-		GFF1449	0.77	-0.5
1,477,522	-		GFF1449	0.77	+0.3
1,477,522	-		GFF1449	0.77	-1.0
1,477,522	-		GFF1449	0.77	-0.9
1,477,522	-		GFF1449	0.77	-1.2
1,477,522	-		GFF1449	0.77	-0.2
1,477,522	-		GFF1449	0.77	+0.0
1,477,522	-		GFF1449	0.77	-1.6
1,477,573	+		GFF1449	0.80	-0.1
1,477,573	+		GFF1449	0.80	+0.2
1,477,573	+		GFF1449	0.80	+0.3
1,477,573	+		GFF1449	0.80	+0.8
1,477,573	+		GFF1449	0.80	+0.1
1,477,573	+		GFF1449	0.80	+0.1
1,477,578	+		GFF1449	0.81	+0.1
1,477,581	-		GFF1449	0.81	-0.6
1,477,581	-		GFF1449	0.81	-0.1
1,477,581	-		GFF1449	0.81	+0.4
1,477,581	-		GFF1449	0.81	-1.5
1,477,581	-		GFF1449	0.81	+0.0
1,477,606	+		GFF1449	0.83	+1.0
1,477,606	+		GFF1449	0.83	+0.3
1,477,606	+		GFF1449	0.83	-1.1
1,477,609	-		GFF1449	0.83	+0.5
1,477,614	-		GFF1449	0.83	-0.7
1,477,614	-		GFF1449	0.83	-1.9
1,477,647	+		GFF1449	0.86	-0.5
1,477,652	+		GFF1449	0.86	+0.4
1,477,660	-		GFF1449	0.86	+0.2
1,477,664	-		GFF1449	0.87	-1.0
1,477,665	-		GFF1449	0.87	+0.6
1,477,668	-		GFF1449	0.87	-1.3
1,477,670	+		GFF1449	0.87	+0.6
1,477,682	+		GFF1449	0.88	-0.9
1,477,695	-		GFF1449	0.89	+0.6
1,477,697	+		GFF1449	0.89	+1.0
1,477,705	+		GFF1449	0.90	+0.1
1,477,705	-		GFF1449	0.90	+0.1
1,477,730	+				+0.1
1,477,733	-				-0.5
1,477,738	-				+0.2
1,477,767	-				-0.1
1,477,783	+				+0.5
1,477,793	+				+0.5
1,477,796	-				-0.3
1,477,801	-				-0.4
1,477,824	-				-1.2
1,477,824	-				-0.3
1,477,824	-				-1.3
1,477,826	-				+0.3
1,477,840	-				-3.2
1,477,875	-				-2.2
1,477,888	-				+0.0
1,477,898	-				-1.0
1,477,933	+				+1.7
1,477,958	-				-1.6
1,478,656	+				-0.8
1,478,656	+				-0.2
1,478,657	+				-1.2
1,478,664	-				-2.0
1,478,685	-				-1.4