Strain Fitness in Sphingobium sp. HT1-2 around GFF1445

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,473,701	+				-1.6
1,473,709	+				+0.2
1,473,731	-				+0.3
1,473,750	-				-0.4
1,473,761	+				-1.5
1,473,761	+				-1.7
1,473,764	-				-1.0
1,473,769	-				+0.1
1,473,774	-				-0.2
1,473,824	+				-2.4
1,473,824	+				+0.8
1,473,824	+				+1.1
1,473,825	-				+0.6
1,473,830	-				-0.7
1,473,832	-				-1.6
1,473,832	-				-2.0
1,473,832	-				+0.6
1,473,832	-				-1.0
1,473,832	-				+0.4
1,473,841	+				-1.5
1,473,841	+				-1.3
1,473,868	+				-1.2
1,473,887	+				-2.7
1,473,887	+				-0.2
1,473,887	+				-0.8
1,473,887	+				-1.4
1,473,887	+				+0.7
1,473,895	-				+0.0
1,473,895	-				-0.7
1,473,895	-				-0.4
1,473,895	-				-1.2
1,473,901	+				+0.3
1,473,901	+				-1.6
1,473,901	+				-1.5
1,473,907	+				-0.3
1,473,909	-				+0.0
1,473,909	-				-0.2
1,473,909	-				-0.5
1,473,909	-				+0.3
1,473,915	-				-1.2
1,473,929	-				-0.5
1,473,952	-				+0.1
1,473,959	+				-0.7
1,473,983	-				-0.0
1,473,985	+				-0.2
1,473,998	-				-1.0
1,474,000	-				-0.8
1,474,014	+				-2.0
1,474,039	+				-0.1
1,474,041	+				+0.2
1,474,047	+				-1.3
1,474,060	+				-0.7
1,474,061	-				+0.0
1,474,061	-				-0.2
1,474,085	+				-0.3
1,474,093	-				-1.2
1,474,093	-				+0.7
1,474,095	+				-2.1
1,474,095	+				+0.8
1,474,095	+				-1.4
1,474,095	+				-0.9
1,474,095	+				-0.1
1,474,095	+				+0.5
1,474,095	+				-0.5
1,474,095	+				+0.8
1,474,095	+				-0.5
1,474,095	+				-1.0
1,474,103	-				+0.2
1,474,103	-				+1.0
1,474,103	-				+0.6
1,474,103	-				+0.2
1,474,103	-				-1.5
1,474,103	-				-1.6
1,474,103	-				-0.2
1,474,103	-				-1.0
1,474,103	-				-2.6
1,474,103	-				+0.7
1,474,108	-				+0.4
1,474,110	+				+0.7
1,474,110	+				+0.4
1,474,110	+				-1.8
1,474,110	+				-0.2
1,474,110	+				-0.6
1,474,110	+				-1.0
1,474,110	+				+0.3
1,474,110	+				+0.5
1,474,110	+				-0.1
1,474,110	+				-2.0
1,474,110	+				-2.3
1,474,118	+				-0.5
1,474,118	-				+0.2
1,474,118	-				-2.3
1,474,118	-				+0.5
1,474,118	-				-0.3
1,474,118	-				+1.3
1,474,118	-				-0.6
1,474,118	-				+0.8
1,474,118	-				-0.2
1,474,118	-				-1.0
1,474,118	-				-0.5
1,474,118	-				-0.3
1,474,120	+				-0.3
1,474,120	+				-0.1
1,474,120	+				+0.3
1,474,120	+				+0.5
1,474,125	+				-0.7
1,474,128	-				+1.3
1,474,128	-				+0.5
1,474,133	+				-1.4
1,474,133	+				+1.3
1,474,133	+				-1.1
1,474,133	+				-0.5
1,474,133	+				-1.2
1,474,133	+				+0.5
1,474,141	-				+1.3
1,474,141	-				+0.5
1,474,141	-				+0.5
1,474,141	-				-0.7
1,474,145	-				-0.1
1,474,148	+				-0.7
1,474,148	+				+1.1
1,474,153	+				-0.0
1,474,153	+				-0.5
1,474,153	+				-0.2
1,474,156	-				-0.6
1,474,161	-				+0.6
1,474,194	-				+0.3
1,474,215	-				+1.0
1,474,217	+				+1.5
1,474,217	-				+2.1
1,474,239	+				+0.4
1,474,276	+				+0.8
1,474,276	+				-1.0
1,474,305	+				-1.0
1,474,305	+				-2.3
1,474,327	+				-1.6
1,474,366	+				-0.2
1,474,375	+				-0.0
1,474,407	+				-0.4
1,474,437	+				+0.1
1,474,445	-				-1.6
1,474,451	+				+0.3
1,474,473	-				-0.1
1,474,473	-				+1.1
1,474,473	-				-0.5
1,474,478	-				-0.4
1,474,543	-				+0.2
1,474,559	-				-1.4
1,474,583	-				+0.9
1,474,594	+				+0.8
1,474,594	+				-1.0
1,474,597	-				-0.7
1,474,602	-				-0.7
1,474,622	+				-0.0
1,474,627	+				+0.0
1,474,630	-				-0.3
1,474,630	-				-0.3
1,474,630	-				-2.2
1,474,635	-				+0.5
1,474,663	+				-0.6
1,474,666	-				+0.6
1,474,674	+				+0.4
1,474,689	+				-0.2
1,474,692	-				-0.5
1,474,697	+				+0.8
1,474,697	-				-2.6
1,474,715	-				-0.4
1,474,721	+				+0.0
1,474,733	+		GFF1445	0.14	+0.0
1,474,738	+		GFF1445	0.16	-0.7
1,474,738	+		GFF1445	0.16	-1.9
1,474,739	-		GFF1445	0.16	-1.6
1,474,743	+		GFF1445	0.18	-0.2
1,474,746	-		GFF1445	0.19	+0.8
1,474,746	-		GFF1445	0.19	-0.1
1,474,751	-		GFF1445	0.21	-0.3
1,474,751	-		GFF1445	0.21	-0.4
1,474,751	-		GFF1445	0.21	-0.5
1,474,751	-		GFF1445	0.21	+1.2
1,474,751	-		GFF1445	0.21	+1.4
1,474,761	+		GFF1445	0.25	-0.1
1,474,762	-		GFF1445	0.25	+0.9
1,474,762	-		GFF1445	0.25	+0.8
1,474,767	-		GFF1445	0.27	+0.3
1,474,788	+		GFF1445	0.36	-0.5
1,474,788	+		GFF1445	0.36	-2.6
1,474,788	+		GFF1445	0.36	-2.4
1,474,788	+		GFF1445	0.36	-0.2
1,474,801	+		GFF1445	0.41	-1.4
1,474,801	+		GFF1445	0.41	+0.0
1,474,830	-		GFF1445	0.53	-0.1
1,474,839	+		GFF1445	0.56	-0.3
1,474,839	+		GFF1445	0.56	+1.2
1,474,839	+		GFF1445	0.56	-0.3
1,474,839	+		GFF1445	0.56	-1.0
1,474,839	+		GFF1445	0.56	+1.4
1,474,839	+		GFF1445	0.56	+0.4
1,474,839	+		GFF1445	0.56	-0.7
1,474,840	-		GFF1445	0.57	+0.3
1,474,844	+		GFF1445	0.58	-0.8
1,474,844	+		GFF1445	0.58	+0.9
1,474,844	+		GFF1445	0.58	+0.2
1,474,847	-		GFF1445	0.59	-0.5
1,474,847	-		GFF1445	0.59	+0.3
1,474,847	-		GFF1445	0.59	+0.2
1,474,847	-		GFF1445	0.59	-0.3
1,474,857	-		GFF1445	0.63	+0.2
1,474,860	+		GFF1445	0.65	-1.0
1,474,882	+		GFF1445	0.73	-3.2
1,474,896	-		GFF1445	0.79	+1.0
1,474,940	+				+1.5
1,474,949	+				+0.6
1,474,975	+				-1.1
1,474,991	+				+0.1
1,474,996	+				+0.3
1,474,999	-				-0.2
1,474,999	-				+0.4
1,474,999	-				-1.4
1,475,004	-				-0.0
1,475,004	-				+0.5
1,475,009	-				-0.6
1,475,032	+		GFF1446	0.16	+0.1
1,475,032	+		GFF1446	0.16	-0.9
1,475,032	+		GFF1446	0.16	-0.3
1,475,037	+		GFF1446	0.18	+0.3
1,475,040	-		GFF1446	0.19	-2.8
1,475,040	-		GFF1446	0.19	-0.1
1,475,040	-		GFF1446	0.19	-1.8
1,475,040	-		GFF1446	0.19	-0.2
1,475,043	+		GFF1446	0.20	-0.5
1,475,056	-		GFF1446	0.25	-1.1
1,475,056	-		GFF1446	0.25	+0.2
1,475,056	-		GFF1446	0.25	-1.2
1,475,056	-		GFF1446	0.25	-0.3
1,475,061	-		GFF1446	0.27	+0.1
1,475,061	-		GFF1446	0.27	+1.1
1,475,061	-		GFF1446	0.27	+0.2
1,475,061	-		GFF1446	0.27	+0.9
1,475,061	-		GFF1446	0.27	-0.5
1,475,061	-		GFF1446	0.27	-0.2
1,475,082	+		GFF1446	0.36	-0.4
1,475,082	+		GFF1446	0.36	+1.4
1,475,082	+		GFF1446	0.36	+0.2
1,475,087	+		GFF1446	0.38	-0.7
1,475,090	+		GFF1446	0.39	-0.2
1,475,095	+		GFF1446	0.41	+0.9
1,475,095	+		GFF1446	0.41	-0.9
1,475,095	+		GFF1446	0.41	-0.1
1,475,095	+		GFF1446	0.41	+0.3
1,475,095	+		GFF1446	0.41	-1.1
1,475,126	+		GFF1446	0.53	-1.8
1,475,143	+		GFF1446	0.60	-0.7
1,475,146	-		GFF1446	0.61	-0.2
1,475,165	+		GFF1446	0.69	-0.0
1,475,180	-		GFF1446	0.75	+0.6
1,475,183	-		GFF1446	0.76	-0.6
1,475,183	-		GFF1446	0.76	+0.4
1,475,183	-		GFF1446	0.76	-2.0
1,475,208	-		GFF1446	0.86	-1.7
1,475,234	+				+0.6
1,475,234	+				-0.7
1,475,275	+				-1.7
1,475,298	+				+0.2
1,475,508	-				+0.4
1,475,517	+				-0.2
1,475,537	+				-0.8
1,475,547	+				+0.0
1,475,555	-				-0.2
1,475,557	+				+0.3
1,475,557	+				+0.4
1,475,561	+				+0.6
1,475,561	-				+0.1
1,475,562	+				-0.1
1,475,565	-				-1.3
1,475,572	+				-0.7
1,475,580	-				-0.1
1,475,582	+				+0.5
1,475,582	+				+1.0
1,475,592	+		GFF1448	0.11	+0.5
1,475,593	+		GFF1448	0.11	-0.1
1,475,593	+		GFF1448	0.11	-0.3
1,475,601	-		GFF1448	0.12	-0.2
1,475,605	+		GFF1448	0.13	-0.9
1,475,605	+		GFF1448	0.13	-0.2
1,475,636	-		GFF1448	0.17	-0.8
1,475,644	+		GFF1448	0.19	-0.4
1,475,657	-		GFF1448	0.21	+0.0
1,475,659	+		GFF1448	0.21	+0.2
1,475,659	+		GFF1448	0.21	+0.3
1,475,667	-		GFF1448	0.22	+1.2
1,475,667	-		GFF1448	0.22	-1.5
1,475,667	-		GFF1448	0.22	-0.5
1,475,667	-		GFF1448	0.22	+0.0
1,475,682	+		GFF1448	0.24	-1.7
1,475,690	-		GFF1448	0.26	-1.1
1,475,690	-		GFF1448	0.26	-0.3
1,475,694	+		GFF1448	0.26	-1.4
1,475,707	-		GFF1448	0.28	-1.4
1,475,732	+		GFF1448	0.32	-1.6
1,475,740	-		GFF1448	0.33	-0.4
1,475,749	+		GFF1448	0.35	+0.8
1,475,749	+		GFF1448	0.35	-0.2
1,475,749	+		GFF1448	0.35	+1.4
1,475,757	-		GFF1448	0.36	-0.3
1,475,757	-		GFF1448	0.36	+0.4
1,475,757	-		GFF1448	0.36	-1.8
1,475,757	-		GFF1448	0.36	-0.6
1,475,757	-		GFF1448	0.36	-0.6
1,475,757	-		GFF1448	0.36	-0.9
1,475,758	+		GFF1448	0.36	-0.4
1,475,781	-		GFF1448	0.40	-1.3
1,475,788	+		GFF1448	0.41	-1.2
1,475,825	+		GFF1448	0.46	-1.3
1,475,846	+		GFF1448	0.50	+0.9
1,475,849	-		GFF1448	0.50	-1.5
1,475,852	-		GFF1448	0.51	-1.8
1,475,871	-		GFF1448	0.53	-0.8
1,475,887	-		GFF1448	0.56	-1.6
1,475,890	+		GFF1448	0.56	-0.8
1,475,906	+		GFF1448	0.59	-0.9
1,475,906	-		GFF1448	0.59	+0.3
1,475,911	-		GFF1448	0.60	+0.4
1,475,911	-		GFF1448	0.60	-0.4