Strain Fitness in Sphingobium sp. HT1-2 around GFF143

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
137,195	+		GFF142	0.12	-1.5
137,200	+		GFF142	0.12	-1.3
137,203	-		GFF142	0.13	-2.2
137,213	-		GFF142	0.14	-1.4
137,253	+		GFF142	0.18	-1.1
137,256	-		GFF142	0.18	-1.0
137,256	-		GFF142	0.18	-1.6
137,261	-		GFF142	0.18	-1.7
137,261	-		GFF142	0.18	-1.6
137,261	-		GFF142	0.18	-0.9
137,266	-		GFF142	0.19	-1.5
137,272	+		GFF142	0.20	-0.6
137,273	+		GFF142	0.20	-2.2
137,281	-		GFF142	0.21	-0.7
137,363	+		GFF142	0.29	-0.1
137,366	-		GFF142	0.29	-1.5
137,371	-		GFF142	0.30	-1.9
137,371	-		GFF142	0.30	-1.7
137,371	-		GFF142	0.30	-0.8
137,371	-		GFF142	0.30	-1.9
137,380	+		GFF142	0.31	-0.2
137,380	+		GFF142	0.31	-2.0
137,380	+		GFF142	0.31	-1.8
137,380	+		GFF142	0.31	-1.3
137,380	+		GFF142	0.31	-2.4
137,380	+		GFF142	0.31	-0.1
137,383	-		GFF142	0.31	-0.9
137,388	-		GFF142	0.31	-1.0
137,388	-		GFF142	0.31	-0.9
137,390	+		GFF142	0.32	-2.6
137,390	+		GFF142	0.32	-1.8
137,390	+		GFF142	0.32	-1.6
137,390	+		GFF142	0.32	-2.8
137,390	+		GFF142	0.32	-0.7
137,390	+		GFF142	0.32	-0.8
137,390	+		GFF142	0.32	-1.4
137,390	+		GFF142	0.32	-0.2
137,390	+		GFF142	0.32	-2.9
137,390	+		GFF142	0.32	-1.5
137,390	+		GFF142	0.32	-0.8
137,390	+		GFF142	0.32	-2.7
137,390	+		GFF142	0.32	-1.7
137,390	+		GFF142	0.32	+0.1
137,390	+		GFF142	0.32	-0.5
137,390	+		GFF142	0.32	-2.6
137,390	+		GFF142	0.32	-1.1
137,398	-		GFF142	0.33	-3.4
137,398	-		GFF142	0.33	-3.3
137,398	-		GFF142	0.33	-3.1
137,398	-		GFF142	0.33	-1.3
137,398	-		GFF142	0.33	-1.8
137,398	-		GFF142	0.33	-1.3
137,398	-		GFF142	0.33	-2.8
137,398	-		GFF142	0.33	-0.5
137,398	-		GFF142	0.33	-3.2
137,398	-		GFF142	0.33	-2.2
137,398	-		GFF142	0.33	-1.4
137,398	-		GFF142	0.33	+0.3
137,398	-		GFF142	0.33	-2.3
137,398	-		GFF142	0.33	-0.7
137,398	-		GFF142	0.33	-3.0
137,398	-		GFF142	0.33	-1.2
137,427	-		GFF142	0.35	+0.8
137,427	-		GFF142	0.35	-0.3
137,430	+		GFF142	0.36	-0.6
137,449	-		GFF142	0.38	-0.3
137,451	+		GFF142	0.38	-0.2
137,459	-		GFF142	0.39	-0.1
137,464	-		GFF142	0.39	-0.8
137,464	-		GFF142	0.39	-1.2
137,473	+		GFF142	0.40	-0.6
137,475	+		GFF142	0.40	-1.3
137,478	-		GFF142	0.41	+0.1
137,492	-		GFF142	0.42	-1.5
137,492	-		GFF142	0.42	-0.6
137,515	+		GFF142	0.45	-2.4
137,520	+		GFF142	0.45	-2.8
137,523	-		GFF142	0.45	-1.9
137,542	+		GFF142	0.47	-2.3
137,542	+		GFF142	0.47	-1.1
137,550	-		GFF142	0.48	-1.0
137,550	-		GFF142	0.48	-0.8
137,550	-		GFF142	0.48	-1.9
137,550	-		GFF142	0.48	-1.2
137,553	+		GFF142	0.48	-0.7
137,553	+		GFF142	0.48	-2.4
137,555	+		GFF142	0.49	-1.1
137,555	+		GFF142	0.49	-2.3
137,555	+		GFF142	0.49	-2.7
137,555	+		GFF142	0.49	-1.4
137,555	+		GFF142	0.49	-2.1
137,555	+		GFF142	0.49	-2.5
137,561	-		GFF142	0.49	-0.6
137,561	-		GFF142	0.49	-0.8
137,563	-		GFF142	0.49	-4.0
137,563	-		GFF142	0.49	-1.2
137,563	-		GFF142	0.49	-2.1
137,563	-		GFF142	0.49	-2.1
137,563	-		GFF142	0.49	-0.4
137,563	-		GFF142	0.49	-0.4
137,568	-		GFF142	0.50	-0.6
137,577	+		GFF142	0.51	+0.2
137,580	-		GFF142	0.51	-2.5
137,580	-		GFF142	0.51	-2.7
137,587	+		GFF142	0.52	-0.7
137,603	+		GFF142	0.54	-1.0
137,611	-		GFF142	0.54	-0.7
137,611	-		GFF142	0.54	-0.7
137,611	-		GFF142	0.54	-3.2
137,611	-		GFF142	0.54	-1.0
137,618	-		GFF142	0.55	-1.6
137,632	-		GFF142	0.57	-0.7
137,638	-		GFF142	0.57	-1.5
137,642	+		GFF142	0.58	-2.0
137,642	+		GFF142	0.58	-2.0
137,642	+		GFF142	0.58	-1.9
137,642	+		GFF142	0.58	-1.9
137,642	+		GFF142	0.58	-1.4
137,642	+		GFF142	0.58	-2.1
137,645	-		GFF142	0.58	-2.1
137,650	-		GFF142	0.58	-0.2
137,650	-		GFF142	0.58	-0.9
137,650	-		GFF142	0.58	-2.1
137,650	-		GFF142	0.58	-2.4
137,650	-		GFF142	0.58	-1.8
137,650	-		GFF142	0.58	-2.5
137,650	-		GFF142	0.58	-0.6
137,678	-		GFF142	0.61	-2.0
137,680	+		GFF142	0.61	-3.3
137,680	+		GFF142	0.61	-1.4
137,680	+		GFF142	0.61	-1.1
137,680	+		GFF142	0.61	-2.0
137,680	+		GFF142	0.61	-0.6
137,680	+		GFF142	0.61	-0.9
137,680	+		GFF142	0.61	-1.8
137,680	+		GFF142	0.61	-1.4
137,685	+		GFF142	0.62	-1.0
137,688	-		GFF142	0.62	-1.5
137,688	-		GFF142	0.62	-3.1
137,688	-		GFF142	0.62	-4.0
137,688	-		GFF142	0.62	-2.2
137,688	-		GFF142	0.62	+0.0
137,688	-		GFF142	0.62	-2.0
137,688	-		GFF142	0.62	-1.3
137,695	+		GFF142	0.63	-1.7
137,703	-		GFF142	0.64	+0.1
137,703	-		GFF142	0.64	-1.1
137,708	+		GFF142	0.64	-4.3
137,716	-		GFF142	0.65	-2.1
137,727	+		GFF142	0.66	-0.5
137,727	+		GFF142	0.66	-3.1
137,727	+		GFF142	0.66	-0.8
137,727	+		GFF142	0.66	-0.2
137,727	+		GFF142	0.66	-2.2
137,728	+		GFF142	0.66	-3.7
137,728	+		GFF142	0.66	-2.0
137,735	-		GFF142	0.67	-3.3
137,736	-		GFF142	0.67	-2.5
137,736	-		GFF142	0.67	-1.8
137,736	-		GFF142	0.67	-0.8
137,746	-		GFF142	0.68	-1.9
137,803	+		GFF142	0.74	-0.1
137,828	-		GFF142	0.77	-1.7
137,834	+		GFF142	0.77	-1.2
137,839	+		GFF142	0.78	-0.6
137,839	+		GFF142	0.78	-0.2
137,839	+		GFF142	0.78	-0.4
137,839	+		GFF142	0.78	+0.2
137,844	-		GFF142	0.78	-3.0
137,847	-		GFF142	0.79	-0.2
137,847	-		GFF142	0.79	-0.7
137,860	+		GFF142	0.80	-1.5
137,861	+		GFF142	0.80	-3.1
137,861	+		GFF142	0.80	-3.9
137,861	+		GFF142	0.80	-2.9
137,868	-		GFF142	0.81	-0.5
137,868	-		GFF142	0.81	-2.1
137,869	+		GFF142	0.81	-2.4
137,869	-		GFF142	0.81	-2.4
137,869	-		GFF142	0.81	-0.9
137,869	-		GFF142	0.81	-1.8
137,869	-		GFF142	0.81	-2.4
137,869	-		GFF142	0.81	-1.5
137,869	-		GFF142	0.81	-1.8
137,872	+		GFF142	0.81	-2.0
137,872	+		GFF142	0.81	-3.1
137,879	+		GFF142	0.82	-0.4
137,880	-		GFF142	0.82	+0.4
137,882	+		GFF142	0.82	-2.0
137,893	+		GFF142	0.83	-2.3
137,893	+		GFF142	0.83	-1.3
137,894	+		GFF142	0.83	-0.5
137,894	+		GFF142	0.83	-0.1
137,931	+		GFF142	0.87	-2.2
137,937	+		GFF142	0.88	-2.7
137,953	+		GFF142	0.89	-1.8
137,953	+		GFF142	0.89	-2.8
137,953	+		GFF142	0.89	-0.6
137,953	+		GFF142	0.89	-1.4
137,953	+		GFF142	0.89	-0.9
137,953	+		GFF142	0.89	-0.1
137,953	+		GFF142	0.89	-1.5
137,953	+		GFF142	0.89	-2.2
137,953	+		GFF142	0.89	-1.0
137,961	+				-0.8
137,961	-				-1.5
137,961	-				-1.9
137,961	-				-0.7
137,961	-				-2.3
137,961	-				-0.6
137,961	-				-0.6
137,961	-				-1.2
137,969	-				-1.3
137,969	-				-1.2
137,969	-				-1.6
137,989	+				-0.4
137,991	-				-0.9
137,994	+				-1.1
138,000	+				-0.2
138,002	-				-1.5
138,007	-				-2.9
138,013	+				-1.8
138,015	+				-1.8
138,021	-				-2.6
138,068	-				-1.7
138,100	+				-0.7
138,108	-				-1.6
138,119	+				-0.2
138,132	+				-3.0
138,132	+				-0.2
138,137	+				+0.7
138,142	+				-1.8
138,142	+				+0.2
138,142	+				-3.2
138,142	+				-0.8
138,145	-				-1.8
138,145	-				+0.2
138,145	-				+0.3
138,149	+				-0.2
138,150	-				-2.4
138,162	+				-1.1
138,165	-				-2.2
138,171	-				+0.2
138,254	-		GFF143	0.13	-1.5
138,340	-		GFF143	0.28	-0.9
138,347	+		GFF143	0.29	-1.1
138,355	-		GFF143	0.30	-2.3
138,363	+		GFF143	0.32	-0.0
138,363	-		GFF143	0.32	-0.8
138,372	-		GFF143	0.33	+0.1
138,464	+		GFF143	0.49	-1.0
138,489	-		GFF143	0.53	-1.4
138,497	-		GFF143	0.55	-2.3
138,534	+		GFF143	0.61	-0.0
138,534	+		GFF143	0.61	-0.1
138,534	+		GFF143	0.61	-1.0
138,542	+		GFF143	0.63	-1.5
138,542	-		GFF143	0.63	-1.2
138,542	-		GFF143	0.63	-0.0
138,542	-		GFF143	0.63	-1.6
138,566	+		GFF143	0.67	-0.7
138,566	-		GFF143	0.67	-0.2
138,579	+		GFF143	0.69	-2.0
138,596	+		GFF143	0.72	+0.1
138,604	-		GFF143	0.73	-1.0
138,630	-		GFF143	0.78	-0.5
138,646	+		GFF143	0.80	-1.6
138,648	+		GFF143	0.81	-0.3
138,666	-		GFF143	0.84	-1.0
138,666	-		GFF143	0.84	-0.2
138,666	-		GFF143	0.84	-0.1
138,672	-		GFF143	0.85	-0.4
138,752	+				+0.5
138,767	+				-1.4
138,770	-				-1.1
138,781	+				-1.3
138,781	-				-2.0
138,791	-				-1.5
138,851	+		GFF144	0.25	-0.9
138,851	+		GFF144	0.25	-0.2
138,859	-		GFF144	0.27	-2.0
138,884	-		GFF144	0.34	+1.2
138,889	-		GFF144	0.36	-1.2
138,894	-		GFF144	0.37	+0.9
138,896	+		GFF144	0.38	-0.1
138,911	+		GFF144	0.42	+0.5
138,919	-		GFF144	0.45	-1.4
138,919	-		GFF144	0.45	+0.3
138,936	+		GFF144	0.50	-0.7
138,985	+		GFF144	0.64	-1.7
138,985	+		GFF144	0.64	+1.0
138,985	+		GFF144	0.64	+0.5
138,994	+		GFF144	0.66	-0.5
139,002	-		GFF144	0.69	-0.7
139,023	+		GFF144	0.75	+0.5
139,028	+		GFF144	0.76	+0.2
139,028	+		GFF144	0.76	-0.4
139,036	-		GFF144	0.79	-2.4
139,036	-		GFF144	0.79	-1.1
139,036	-		GFF144	0.79	-2.2
139,057	+		GFF144	0.85	-1.5
139,057	+		GFF144	0.85	-1.6
139,065	-		GFF144	0.87	-2.0
139,065	-		GFF144	0.87	+0.5
139,067	+		GFF144	0.88	+0.8
139,067	+		GFF144	0.88	-1.1
139,067	+		GFF144	0.88	-0.1
139,067	+		GFF144	0.88	-1.2
139,067	+		GFF144	0.88	+0.5
139,067	+		GFF144	0.88	+1.1
139,067	+		GFF144	0.88	-0.2
139,067	+		GFF144	0.88	-1.1
139,067	+		GFF144	0.88	+0.3
139,067	+		GFF144	0.88	+0.2
139,067	+		GFF144	0.88	-0.4
139,067	+		GFF144	0.88	-0.2
139,067	+		GFF144	0.88	-0.4
139,067	+		GFF144	0.88	-0.4
139,067	+		GFF144	0.88	+0.1
139,067	+		GFF144	0.88	-0.1
139,070	-		GFF144	0.88	-1.0
139,073	+		GFF144	0.89	-0.5
139,075	-				-2.0
139,075	-				-1.0
139,075	-				-1.7
139,075	-				+1.5
139,075	-				-0.2
139,075	-				-0.1
139,075	-				-0.6
139,075	-				-0.7
139,075	-				+0.8
139,075	-				-1.2
139,075	-				-1.0
139,075	-				-0.7
139,081	-				-1.2
139,081	-				+0.7
139,113	-				-0.6
139,120	+				+0.2
139,128	+				+0.7
139,135	+				-0.5
139,135	-				-0.9