Strain Fitness in Sphingobium sp. HT1-2 around GFF1414

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,442,599	+				-1.0
1,442,609	+				-0.0
1,442,635	+				+0.4
1,442,635	+				-0.8
1,442,666	+		GFF1413	0.10	-1.7
1,442,666	+		GFF1413	0.10	-0.7
1,442,672	+		GFF1413	0.11	-1.5
1,442,679	+		GFF1413	0.12	-0.7
1,442,679	+		GFF1413	0.12	-1.5
1,442,679	+		GFF1413	0.12	-1.6
1,442,679	+		GFF1413	0.12	-0.7
1,442,680	-		GFF1413	0.12	-2.0
1,442,687	-		GFF1413	0.12	+0.5
1,442,687	-		GFF1413	0.12	-0.2
1,442,703	+		GFF1413	0.14	+0.7
1,442,708	+		GFF1413	0.15	+0.0
1,442,713	+		GFF1413	0.15	+0.5
1,442,721	-		GFF1413	0.16	+0.5
1,442,758	-		GFF1413	0.20	-0.2
1,442,771	+		GFF1413	0.21	-0.1
1,442,851	-		GFF1413	0.30	-1.5
1,442,864	+		GFF1413	0.31	+0.5
1,442,880	+		GFF1413	0.33	+1.1
1,442,880	+		GFF1413	0.33	-0.2
1,442,880	+		GFF1413	0.33	-0.5
1,442,882	+		GFF1413	0.33	-0.9
1,442,882	+		GFF1413	0.33	+1.0
1,442,882	+		GFF1413	0.33	+0.1
1,442,883	-		GFF1413	0.33	-0.8
1,442,888	-		GFF1413	0.33	+0.9
1,442,888	-		GFF1413	0.33	-1.8
1,442,890	-		GFF1413	0.34	-1.5
1,442,890	-		GFF1413	0.34	+0.4
1,442,890	-		GFF1413	0.34	-1.1
1,442,890	-		GFF1413	0.34	+0.0
1,442,890	-		GFF1413	0.34	+0.2
1,442,897	+		GFF1413	0.34	+0.5
1,442,900	-		GFF1413	0.35	+0.1
1,442,924	+		GFF1413	0.37	-0.4
1,443,009	-		GFF1413	0.46	-0.8
1,443,029	+		GFF1413	0.48	+0.3
1,443,052	-		GFF1413	0.51	+0.5
1,443,060	-		GFF1413	0.51	+0.5
1,443,061	+		GFF1413	0.51	-1.4
1,443,069	-		GFF1413	0.52	-0.8
1,443,071	-		GFF1413	0.53	+0.2
1,443,104	-		GFF1413	0.56	+0.3
1,443,146	-		GFF1413	0.60	-0.8
1,443,161	-		GFF1413	0.62	-2.2
1,443,161	-		GFF1413	0.62	+0.2
1,443,179	+		GFF1413	0.64	-0.0
1,443,193	+		GFF1413	0.65	-1.7
1,443,197	+		GFF1413	0.66	-1.5
1,443,205	+		GFF1413	0.66	-0.2
1,443,233	-		GFF1413	0.69	+1.9
1,443,245	-		GFF1413	0.71	-0.7
1,443,245	-		GFF1413	0.71	-1.5
1,443,252	+		GFF1413	0.71	+0.0
1,443,252	+		GFF1413	0.71	+0.1
1,443,252	+		GFF1413	0.71	+1.0
1,443,252	+		GFF1413	0.71	-0.1
1,443,252	+		GFF1413	0.71	-0.7
1,443,252	+		GFF1413	0.71	+1.0
1,443,252	+		GFF1413	0.71	+0.3
1,443,252	+		GFF1413	0.71	-0.6
1,443,252	+		GFF1413	0.71	+0.4
1,443,260	-		GFF1413	0.72	-1.7
1,443,260	-		GFF1413	0.72	+0.1
1,443,260	-		GFF1413	0.72	-1.1
1,443,260	-		GFF1413	0.72	-0.8
1,443,260	-		GFF1413	0.72	-0.4
1,443,260	-		GFF1413	0.72	-0.4
1,443,260	-		GFF1413	0.72	+0.8
1,443,260	-		GFF1413	0.72	+0.2
1,443,260	-		GFF1413	0.72	-0.6
1,443,270	-		GFF1413	0.73	-0.2
1,443,296	+		GFF1413	0.76	+0.2
1,443,296	+		GFF1413	0.76	-1.2
1,443,299	-		GFF1413	0.76	-0.1
1,443,304	-		GFF1413	0.77	-0.1
1,443,304	-		GFF1413	0.77	+2.3
1,443,333	-		GFF1413	0.80	-0.0
1,443,363	+		GFF1413	0.83	+0.1
1,443,368	+		GFF1413	0.83	+0.5
1,443,371	-		GFF1413	0.84	-0.9
1,443,371	-		GFF1413	0.84	-0.4
1,443,373	+		GFF1413	0.84	+0.5
1,443,373	+		GFF1413	0.84	-0.4
1,443,381	-		GFF1413	0.85	-1.2
1,443,384	+		GFF1413	0.85	+0.9
1,443,402	-		GFF1413	0.87	-0.5
1,443,427	-		GFF1413	0.90	-0.2
1,443,427	-		GFF1413	0.90	+0.9
1,443,427	-		GFF1413	0.90	-0.5
1,443,432	-				+0.1
1,443,432	-				-0.4
1,443,469	+				-1.5
1,443,469	+				-0.2
1,443,469	+				-0.2
1,443,477	-				-0.5
1,443,497	+				-0.4
1,443,504	+				-2.8
1,443,504	+				-1.6
1,443,504	+				-0.2
1,443,504	+				-1.4
1,443,509	+				+0.3
1,443,509	+				-1.9
1,443,512	-				-0.5
1,443,512	-				+0.8
1,443,512	-				-0.7
1,443,514	+				-0.8
1,443,514	+				-2.1
1,443,517	-				-1.2
1,443,522	-				-0.7
1,443,597	+				-0.3
1,443,597	+				-1.0
1,443,597	+				-0.5
1,443,624	-				-0.4
1,443,629	-				+1.1
1,443,638	+				-1.5
1,443,638	+				+0.2
1,443,638	+				-0.0
1,443,638	+				-0.5
1,443,646	-				-1.2
1,443,646	-				-0.9
1,443,651	-				-0.8
1,443,678	+				-1.8
1,443,686	-				+0.2
1,443,696	+				-2.2
1,443,696	+				+0.1
1,443,704	-				-1.7
1,443,704	-				-2.0
1,443,704	-				+0.8
1,443,710	-				-1.5
1,443,728	-				+0.4
1,443,729	-				-0.1
1,443,736	+				-0.9
1,443,736	+				-2.2
1,443,744	-				-0.4
1,443,744	-				+0.1
1,443,746	+				+0.3
1,443,746	+				-0.0
1,443,746	+				-1.5
1,443,746	+				+0.3
1,443,746	+				+0.9
1,443,747	+				+0.6
1,443,754	-				+0.1
1,443,754	-				-1.1
1,443,754	-				+0.3
1,443,754	-				-0.3
1,443,754	-				+0.8
1,443,754	-				-0.1
1,443,754	-				-0.1
1,443,754	-				-0.5
1,443,754	-				-0.8
1,443,754	-				-0.1
1,443,754	-				-0.6
1,443,770	+		GFF1414	0.11	+0.6
1,443,770	+		GFF1414	0.11	-1.3
1,443,770	+		GFF1414	0.11	-0.4
1,443,770	+		GFF1414	0.11	+0.8
1,443,772	+		GFF1414	0.11	-0.5
1,443,772	+		GFF1414	0.11	+1.2
1,443,774	+		GFF1414	0.11	-1.9
1,443,778	-		GFF1414	0.11	-1.7
1,443,778	-		GFF1414	0.11	-0.4
1,443,780	-		GFF1414	0.12	-1.2
1,443,780	-		GFF1414	0.12	-1.9
1,443,782	-		GFF1414	0.12	-0.8
1,443,822	+		GFF1414	0.14	-0.7
1,443,830	+		GFF1414	0.15	+0.6
1,443,830	+		GFF1414	0.15	-1.2
1,443,830	+		GFF1414	0.15	-1.6
1,443,830	+		GFF1414	0.15	+0.5
1,443,830	+		GFF1414	0.15	+0.0
1,443,830	+		GFF1414	0.15	-0.4
1,443,830	+		GFF1414	0.15	-0.1
1,443,830	+		GFF1414	0.15	-1.4
1,443,830	+		GFF1414	0.15	-0.1
1,443,830	+		GFF1414	0.15	+0.4
1,443,830	+		GFF1414	0.15	-1.8
1,443,830	+		GFF1414	0.15	+0.0
1,443,830	+		GFF1414	0.15	+0.5
1,443,830	+		GFF1414	0.15	-1.6
1,443,835	-		GFF1414	0.15	+0.9
1,443,837	+		GFF1414	0.15	+1.0
1,443,838	-		GFF1414	0.15	-0.2
1,443,838	-		GFF1414	0.15	-1.1
1,443,838	-		GFF1414	0.15	+0.4
1,443,838	-		GFF1414	0.15	-1.5
1,443,838	-		GFF1414	0.15	-0.1
1,443,838	-		GFF1414	0.15	-0.7
1,443,838	-		GFF1414	0.15	-0.9
1,443,840	-		GFF1414	0.15	-1.1
1,443,840	-		GFF1414	0.15	-0.1
1,443,842	+		GFF1414	0.15	+0.1
1,443,845	-		GFF1414	0.16	+0.1
1,443,858	+		GFF1414	0.16	+0.7
1,443,898	+		GFF1414	0.19	+0.4
1,443,898	+		GFF1414	0.19	-0.5
1,443,901	+		GFF1414	0.19	+0.5
1,443,906	-		GFF1414	0.19	+1.7
1,443,908	+		GFF1414	0.20	-2.2
1,443,914	+		GFF1414	0.20	+0.3
1,443,922	-		GFF1414	0.20	-0.8
1,443,922	-		GFF1414	0.20	-0.4
1,443,922	-		GFF1414	0.20	-0.2
1,443,929	-		GFF1414	0.21	-1.0
1,443,940	-		GFF1414	0.22	-1.1
1,443,942	+		GFF1414	0.22	-0.5
1,443,942	+		GFF1414	0.22	-0.5
1,443,947	+		GFF1414	0.22	-0.9
1,443,950	-		GFF1414	0.22	+0.4
1,443,950	-		GFF1414	0.22	-1.5
1,443,950	-		GFF1414	0.22	-0.2
1,443,978	-		GFF1414	0.24	+1.0
1,443,985	-		GFF1414	0.24	-0.5
1,444,014	-		GFF1414	0.26	+0.6
1,444,014	-		GFF1414	0.26	-0.2
1,444,019	-		GFF1414	0.27	-1.2
1,444,024	+		GFF1414	0.27	+0.0
1,444,024	+		GFF1414	0.27	+0.8
1,444,024	-		GFF1414	0.27	-1.8
1,444,024	-		GFF1414	0.27	+0.4
1,444,030	+		GFF1414	0.27	-0.2
1,444,035	+		GFF1414	0.28	-0.0
1,444,052	+		GFF1414	0.29	-0.5
1,444,062	-		GFF1414	0.29	+0.1
1,444,072	-		GFF1414	0.30	-1.4
1,444,099	+		GFF1414	0.32	+0.1
1,444,099	+		GFF1414	0.32	-1.1
1,444,099	+		GFF1414	0.32	+0.7
1,444,133	+		GFF1414	0.34	+0.3
1,444,133	-		GFF1414	0.34	-0.8
1,444,157	+		GFF1414	0.35	-0.1
1,444,166	+		GFF1414	0.36	+0.7
1,444,174	-		GFF1414	0.36	-0.3
1,444,174	-		GFF1414	0.36	-2.0
1,444,180	-		GFF1414	0.37	+0.4
1,444,204	+		GFF1414	0.38	-0.2
1,444,210	+		GFF1414	0.38	-1.0
1,444,215	+		GFF1414	0.39	+0.0
1,444,218	-		GFF1414	0.39	+0.8
1,444,235	-		GFF1414	0.40	-0.9
1,444,262	+		GFF1414	0.42	-1.1
1,444,270	-		GFF1414	0.42	+0.1
1,444,270	-		GFF1414	0.42	-1.1
1,444,270	-		GFF1414	0.42	-0.4
1,444,306	+		GFF1414	0.44	+0.3
1,444,317	+		GFF1414	0.45	-1.6
1,444,325	-		GFF1414	0.46	-0.5
1,444,325	-		GFF1414	0.46	-0.1
1,444,325	-		GFF1414	0.46	-2.5
1,444,332	+		GFF1414	0.46	+0.4
1,444,332	+		GFF1414	0.46	-0.6
1,444,332	+		GFF1414	0.46	+0.2
1,444,335	-		GFF1414	0.46	-0.6
1,444,340	-		GFF1414	0.47	+0.5
1,444,340	-		GFF1414	0.47	+0.3
1,444,340	-		GFF1414	0.47	+1.1
1,444,340	-		GFF1414	0.47	-1.2
1,444,340	-		GFF1414	0.47	-2.8
1,444,357	+		GFF1414	0.48	-0.3
1,444,357	+		GFF1414	0.48	+0.2
1,444,360	-		GFF1414	0.48	+1.1
1,444,360	-		GFF1414	0.48	+0.4
1,444,377	+		GFF1414	0.49	-2.8
1,444,377	+		GFF1414	0.49	+0.3
1,444,377	+		GFF1414	0.49	-0.0
1,444,380	-		GFF1414	0.49	-0.0
1,444,385	-		GFF1414	0.49	-0.8
1,444,385	-		GFF1414	0.49	+1.8
1,444,390	-		GFF1414	0.50	-0.2
1,444,391	-		GFF1414	0.50	+0.3
1,444,395	-		GFF1414	0.50	-0.4
1,444,400	-		GFF1414	0.50	+0.3
1,444,403	+		GFF1414	0.50	-0.9
1,444,411	-		GFF1414	0.51	+1.1
1,444,412	-		GFF1414	0.51	+1.0
1,444,430	-		GFF1414	0.52	+1.3
1,444,547	+		GFF1414	0.59	+0.9
1,444,547	-		GFF1414	0.59	+1.2
1,444,547	-		GFF1414	0.59	+0.0
1,444,553	+		GFF1414	0.60	-0.4
1,444,553	+		GFF1414	0.60	-1.1
1,444,558	+		GFF1414	0.60	-0.9
1,444,561	-		GFF1414	0.60	-1.2
1,444,561	-		GFF1414	0.60	+0.3
1,444,561	-		GFF1414	0.60	-1.3
1,444,561	-		GFF1414	0.60	-0.4
1,444,561	-		GFF1414	0.60	+0.4
1,444,566	-		GFF1414	0.61	-0.4
1,444,591	-		GFF1414	0.62	-1.0
1,444,608	+		GFF1414	0.63	-0.1
1,444,616	-		GFF1414	0.64	-2.2
1,444,618	+		GFF1414	0.64	+1.1
1,444,633	+		GFF1414	0.65	-1.4
1,444,635	-		GFF1414	0.65	-0.4
1,444,639	+		GFF1414	0.65	-2.6
1,444,678	+		GFF1414	0.68	+0.1
1,444,726	+		GFF1414	0.71	-0.7
1,444,734	-		GFF1414	0.71	+0.1
1,444,742	-		GFF1414	0.72	-0.4
1,444,750	+		GFF1414	0.72	-0.2
1,444,796	-		GFF1414	0.75	-0.5
1,444,796	-		GFF1414	0.75	+0.8
1,444,796	-		GFF1414	0.75	-2.3
1,444,802	+		GFF1414	0.75	+0.5
1,444,816	-		GFF1414	0.76	+0.2
1,444,849	-		GFF1414	0.78	-0.0
1,444,852	+		GFF1414	0.79	-0.0
1,444,860	-		GFF1414	0.79	-1.0
1,444,883	+		GFF1414	0.80	-0.8
1,444,883	+		GFF1414	0.80	-0.2
1,444,888	+		GFF1414	0.81	-0.3
1,444,888	+		GFF1414	0.81	-1.4
1,444,888	+		GFF1414	0.81	+0.3
1,444,895	-		GFF1414	0.81	+1.7
1,444,896	-		GFF1414	0.81	-0.5
1,444,896	-		GFF1414	0.81	-0.2
1,444,896	-		GFF1414	0.81	+0.3
1,444,896	-		GFF1414	0.81	-0.7
1,444,919	+		GFF1414	0.83	-0.7
1,444,921	-		GFF1414	0.83	+0.1
1,444,924	+		GFF1414	0.83	-0.5
1,444,924	+		GFF1414	0.83	+0.8
1,444,924	+		GFF1414	0.83	-1.5
1,444,924	+		GFF1414	0.83	-0.9
1,444,924	+		GFF1414	0.83	-0.7
1,444,924	+		GFF1414	0.83	+0.3
1,444,932	-		GFF1414	0.84	-0.6
1,444,932	-		GFF1414	0.84	-0.6
1,444,932	-		GFF1414	0.84	+0.2
1,444,932	-		GFF1414	0.84	+1.0
1,444,946	+		GFF1414	0.84	-1.3
1,444,958	+		GFF1414	0.85	+0.3
1,444,966	-		GFF1414	0.86	+0.2
1,444,991	-		GFF1414	0.87	+1.2
1,445,002	+		GFF1414	0.88	+0.0
1,445,022	+		GFF1414	0.89	+1.2
1,445,022	+		GFF1414	0.89	+1.6
1,445,027	+		GFF1414	0.89	-0.1
1,445,030	-		GFF1414	0.90	-0.1
1,445,047	-				+0.2
1,445,064	+				-1.5
1,445,064	+				-0.5
1,445,064	+				+0.2
1,445,072	-				-2.6
1,445,074	+				-0.9
1,445,074	+				-0.4
1,445,083	+				-1.9
1,445,083	+				+1.3
1,445,083	+				-1.9
1,445,083	+				-0.5
1,445,083	+				-0.5
1,445,083	+				+0.4
1,445,083	+				+1.0
1,445,083	+				-1.0
1,445,083	+				-1.4
1,445,083	+				+1.2
1,445,083	+				+0.9
1,445,083	+				-0.0
1,445,083	+				-0.4
1,445,083	+				-0.3
1,445,083	+				+0.5
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