Strain Fitness in Sphingobium sp. HT1-2 around GFF1338

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,361,198	+		GFF1336	0.43	+0.4
1,361,206	-		GFF1336	0.44	-0.7
1,361,211	-		GFF1336	0.45	-0.0
1,361,211	-		GFF1336	0.45	+0.2
1,361,216	-		GFF1336	0.46	+0.1
1,361,216	-		GFF1336	0.46	-1.7
1,361,216	-		GFF1336	0.46	-1.0
1,361,230	+		GFF1336	0.49	-0.5
1,361,231	-		GFF1336	0.49	-0.4
1,361,238	-		GFF1336	0.50	+0.1
1,361,238	-		GFF1336	0.50	-1.2
1,361,240	+		GFF1336	0.51	+1.1
1,361,240	+		GFF1336	0.51	+1.0
1,361,240	+		GFF1336	0.51	+0.1
1,361,240	+		GFF1336	0.51	+0.5
1,361,240	+		GFF1336	0.51	-1.0
1,361,240	+		GFF1336	0.51	-1.2
1,361,248	-		GFF1336	0.52	-0.3
1,361,248	-		GFF1336	0.52	-0.9
1,361,248	-		GFF1336	0.52	+0.5
1,361,249	+		GFF1336	0.52	+0.1
1,361,254	+		GFF1336	0.53	+0.5
1,361,262	+		GFF1336	0.55	-1.1
1,361,267	+		GFF1336	0.56	+0.4
1,361,267	+		GFF1336	0.56	+0.8
1,361,267	+		GFF1336	0.56	+0.6
1,361,267	+		GFF1336	0.56	+1.1
1,361,280	+		GFF1336	0.58	+0.1
1,361,314	+		GFF1336	0.65	+0.1
1,361,317	-		GFF1336	0.65	-0.2
1,361,323	+		GFF1336	0.66	-0.8
1,361,323	+		GFF1336	0.66	-2.1
1,361,323	+		GFF1336	0.66	+0.8
1,361,323	+		GFF1336	0.66	-0.8
1,361,325	+		GFF1336	0.67	-1.3
1,361,325	+		GFF1336	0.67	+1.2
1,361,329	-		GFF1336	0.67	-0.2
1,361,331	-		GFF1336	0.68	+0.5
1,361,348	+		GFF1336	0.71	+0.3
1,361,381	-		GFF1336	0.77	-3.1
1,361,391	+		GFF1336	0.79	+0.6
1,361,392	+		GFF1336	0.79	-0.7
1,361,399	-		GFF1336	0.81	+1.1
1,361,399	-		GFF1336	0.81	-1.0
1,361,418	-		GFF1336	0.84	-0.3
1,361,433	+		GFF1336	0.87	+0.3
1,361,433	+		GFF1336	0.87	+1.1
1,361,433	+		GFF1336	0.87	+0.9
1,361,438	+		GFF1336	0.88	-0.5
1,361,440	+		GFF1336	0.88	-0.9
1,361,441	-		GFF1336	0.88	-2.5
1,361,448	+		GFF1336	0.90	-0.7
1,361,448	+		GFF1336	0.90	+0.4
1,361,456	-				-0.3
1,361,456	-				+0.9
1,361,470	+				+1.1
1,361,470	+				+0.8
1,361,478	-				-1.2
1,361,478	-				+0.1
1,361,478	-				+0.8
1,361,478	-				-0.1
1,361,478	-				+1.3
1,361,478	-				+1.1
1,361,478	-				+1.1
1,361,478	-				-0.8
1,361,478	-				-1.8
1,361,479	+				+0.7
1,361,479	+				+0.8
1,361,487	-				-0.1
1,361,487	-				+0.1
1,361,487	-				-0.2
1,361,489	-				-0.2
1,361,540	+				+1.5
1,361,540	+				+0.6
1,361,548	-				-0.5
1,361,597	-				+0.1
1,361,622	-				+0.2
1,361,624	+				+0.2
1,361,624	+				+0.1
1,361,626	+				+0.6
1,361,626	+				-0.9
1,361,626	+				-0.3
1,361,626	+				-1.2
1,361,632	-				+1.0
1,361,632	-				-1.0
1,361,634	-				-0.6
1,361,634	-				+0.4
1,361,634	-				+1.0
1,361,634	-				+0.7
1,361,634	-				-3.0
1,361,634	-				+1.4
1,361,634	-				+0.2
1,361,634	-				+0.9
1,361,634	-				-0.4
1,361,645	-		GFF1337	0.12	-0.9
1,361,650	-		GFF1337	0.13	-0.1
1,361,712	-		GFF1337	0.32	-1.2
1,361,727	+		GFF1337	0.36	+0.3
1,361,727	+		GFF1337	0.36	-0.2
1,361,735	-		GFF1337	0.39	-0.0
1,361,735	-		GFF1337	0.39	-0.3
1,361,735	-		GFF1337	0.39	-0.4
1,361,738	+		GFF1337	0.40	-1.4
1,361,805	+		GFF1337	0.60	-0.6
1,361,811	-		GFF1337	0.62	-0.9
1,361,811	-		GFF1337	0.62	-1.7
1,361,813	-		GFF1337	0.62	+0.3
1,361,813	-		GFF1337	0.62	+0.6
1,361,813	-		GFF1337	0.62	+0.3
1,361,815	+		GFF1337	0.63	+0.2
1,361,815	+		GFF1337	0.63	-0.2
1,361,815	+		GFF1337	0.63	+0.6
1,361,815	+		GFF1337	0.63	-1.2
1,361,815	+		GFF1337	0.63	+1.2
1,361,815	+		GFF1337	0.63	+0.1
1,361,815	+		GFF1337	0.63	+0.7
1,361,815	+		GFF1337	0.63	-1.3
1,361,823	-		GFF1337	0.65	-1.1
1,361,823	-		GFF1337	0.65	-1.4
1,361,823	-		GFF1337	0.65	+0.0
1,361,823	-		GFF1337	0.65	-0.4
1,361,823	-		GFF1337	0.65	+1.0
1,361,823	-		GFF1337	0.65	+1.0
1,361,823	-		GFF1337	0.65	+0.5
1,361,823	-		GFF1337	0.65	+0.4
1,361,823	-		GFF1337	0.65	-0.7
1,361,823	-		GFF1337	0.65	-0.1
1,361,830	-		GFF1337	0.68	-0.2
1,361,850	+		GFF1337	0.74	+1.0
1,361,850	+		GFF1337	0.74	-0.8
1,361,850	+		GFF1337	0.74	-1.9
1,361,850	+		GFF1337	0.74	-0.4
1,361,850	+		GFF1337	0.74	-0.9
1,361,850	+		GFF1337	0.74	-0.2
1,361,850	+		GFF1337	0.74	+1.0
1,361,850	+		GFF1337	0.74	+0.3
1,361,850	+		GFF1337	0.74	-1.4
1,361,858	-		GFF1337	0.76	-0.1
1,361,858	-		GFF1337	0.76	+0.3
1,361,858	-		GFF1337	0.76	-0.2
1,361,858	-		GFF1337	0.76	+0.2
1,361,858	-		GFF1337	0.76	-0.2
1,361,858	-		GFF1337	0.76	-0.1
1,361,858	-		GFF1337	0.76	+0.6
1,361,883	+		GFF1337	0.84	-0.7
1,361,885	+		GFF1337	0.84	-0.9
1,361,885	+		GFF1337	0.84	-0.5
1,361,896	+		GFF1337	0.88	+0.5
1,361,901	-		GFF1337	0.89	-2.1
1,361,903	+		GFF1337	0.90	-0.4
1,361,903	+		GFF1337	0.90	-0.4
1,361,915	+				-0.7
1,361,940	+				+0.7
1,361,940	+				+0.3
1,361,940	-				+0.1
1,361,944	+				+1.3
1,361,944	+				-1.0
1,361,952	+				-1.9
1,361,952	+				+0.4
1,361,952	+				+0.6
1,361,954	+				+0.4
1,361,960	-				-0.6
1,361,983	-				-0.8
1,362,002	+				-0.4
1,362,002	+				+0.2
1,362,003	+				-0.7
1,362,003	+				-0.0
1,362,003	+				-0.0
1,362,010	-				+0.5
1,362,066	+				-1.3
1,362,113	-				+0.4
1,362,119	+				-0.5
1,362,121	+				+0.8
1,362,121	+				+1.7
1,362,121	+				-0.4
1,362,133	-				-0.6
1,362,135	+				+1.4
1,362,140	+				-1.5
1,362,148	-				+1.1
1,362,168	+				-1.1
1,362,185	+				-0.1
1,362,185	+				+0.3
1,362,205	+				-0.7
1,362,211	-				-1.6
1,362,221	-				+0.2
1,362,267	+		GFF1338	0.11	-0.5
1,362,270	-		GFF1338	0.12	-2.5
1,362,288	+		GFF1338	0.14	-1.4
1,362,296	-		GFF1338	0.16	+1.8
1,362,296	-		GFF1338	0.16	-0.8
1,362,296	-		GFF1338	0.16	-0.1
1,362,298	+		GFF1338	0.16	-0.3
1,362,298	+		GFF1338	0.16	-0.1
1,362,298	+		GFF1338	0.16	-0.7
1,362,334	+		GFF1338	0.22	+1.2
1,362,366	+		GFF1338	0.27	-0.0
1,362,389	-		GFF1338	0.31	-0.7
1,362,389	-		GFF1338	0.31	-0.4
1,362,410	+		GFF1338	0.34	+1.1
1,362,415	+		GFF1338	0.35	+0.2
1,362,415	+		GFF1338	0.35	+0.2
1,362,420	+		GFF1338	0.36	-1.7
1,362,420	+		GFF1338	0.36	-0.2
1,362,423	-		GFF1338	0.36	+0.3
1,362,423	-		GFF1338	0.36	-0.5
1,362,425	+		GFF1338	0.37	+0.5
1,362,425	+		GFF1338	0.37	+0.2
1,362,425	+		GFF1338	0.37	+0.0
1,362,427	+		GFF1338	0.37	-0.2
1,362,427	+		GFF1338	0.37	+0.5
1,362,428	-		GFF1338	0.37	+0.4
1,362,433	-		GFF1338	0.38	-1.5
1,362,433	-		GFF1338	0.38	-1.5
1,362,433	-		GFF1338	0.38	-1.5
1,362,435	-		GFF1338	0.38	-0.2
1,362,435	-		GFF1338	0.38	+0.8
1,362,440	+		GFF1338	0.39	-0.9
1,362,440	+		GFF1338	0.39	+0.1
1,362,440	+		GFF1338	0.39	-2.5
1,362,440	+		GFF1338	0.39	+0.6
1,362,440	+		GFF1338	0.39	-1.4
1,362,440	+		GFF1338	0.39	-0.6
1,362,440	+		GFF1338	0.39	-0.5
1,362,440	+		GFF1338	0.39	+1.7
1,362,441	+		GFF1338	0.39	-0.7
1,362,444	-		GFF1338	0.40	+0.1
1,362,448	-		GFF1338	0.40	-0.1
1,362,448	-		GFF1338	0.40	-1.1
1,362,448	-		GFF1338	0.40	+0.1
1,362,448	-		GFF1338	0.40	-1.8
1,362,448	-		GFF1338	0.40	-1.0
1,362,455	-		GFF1338	0.41	-2.0
1,362,473	-		GFF1338	0.44	-1.7
1,362,474	+		GFF1338	0.44	-0.7
1,362,482	-		GFF1338	0.46	+0.8
1,362,482	-		GFF1338	0.46	-0.3
1,362,496	+		GFF1338	0.48	-0.8
1,362,502	+		GFF1338	0.49	+0.4
1,362,510	-		GFF1338	0.50	-0.7
1,362,555	+		GFF1338	0.57	-0.4
1,362,555	+		GFF1338	0.57	+0.1
1,362,555	+		GFF1338	0.57	-1.2
1,362,578	+		GFF1338	0.61	-2.1
1,362,578	+		GFF1338	0.61	-1.2
1,362,578	+		GFF1338	0.61	-0.2
1,362,578	+		GFF1338	0.61	-1.9
1,362,578	+		GFF1338	0.61	-0.9
1,362,578	+		GFF1338	0.61	+0.4
1,362,578	+		GFF1338	0.61	+0.4
1,362,578	+		GFF1338	0.61	+0.4
1,362,578	+		GFF1338	0.61	+0.5
1,362,586	-		GFF1338	0.62	-1.9
1,362,586	-		GFF1338	0.62	-0.9
1,362,586	-		GFF1338	0.62	-1.1
1,362,586	-		GFF1338	0.62	-1.2
1,362,586	-		GFF1338	0.62	-0.3
1,362,593	+		GFF1338	0.64	+0.3
1,362,593	+		GFF1338	0.64	+0.3
1,362,593	+		GFF1338	0.64	+0.6
1,362,593	+		GFF1338	0.64	-0.1
1,362,601	-		GFF1338	0.65	-0.5
1,362,601	-		GFF1338	0.65	-0.9
1,362,601	-		GFF1338	0.65	-0.8
1,362,601	-		GFF1338	0.65	-0.6
1,362,610	+		GFF1338	0.66	-0.1
1,362,610	+		GFF1338	0.66	+0.8
1,362,610	+		GFF1338	0.66	+1.2
1,362,610	+		GFF1338	0.66	-0.6
1,362,610	+		GFF1338	0.66	+0.0
1,362,610	+		GFF1338	0.66	-0.1
1,362,610	+		GFF1338	0.66	-0.1
1,362,610	+		GFF1338	0.66	+1.5
1,362,610	+		GFF1338	0.66	-0.8
1,362,610	+		GFF1338	0.66	-0.6
1,362,616	-		GFF1338	0.67	-1.2
1,362,616	-		GFF1338	0.67	-1.5
1,362,618	-		GFF1338	0.68	-0.9
1,362,618	-		GFF1338	0.68	+1.8
1,362,618	-		GFF1338	0.68	-0.4
1,362,618	-		GFF1338	0.68	-0.6
1,362,618	-		GFF1338	0.68	+0.4
1,362,618	-		GFF1338	0.68	+0.6
1,362,618	-		GFF1338	0.68	-0.5
1,362,645	-		GFF1338	0.72	+1.1
1,362,657	+		GFF1338	0.74	-0.7
1,362,665	-		GFF1338	0.75	-0.5
1,362,665	-		GFF1338	0.75	-0.0
1,362,688	+		GFF1338	0.79	+0.1
1,362,731	+		GFF1338	0.86	+0.3
1,362,741	+		GFF1338	0.87	+0.2
1,362,742	-		GFF1338	0.88	-1.4
1,362,742	-		GFF1338	0.88	-0.1
1,362,746	+		GFF1338	0.88	-0.0
1,362,746	+		GFF1338	0.88	-0.5
1,362,746	+		GFF1338	0.88	+0.0
1,362,746	+		GFF1338	0.88	-0.5
1,362,764	+				-0.0
1,362,779	+				-0.5
1,362,779	+				-0.5
1,362,779	+				+0.3
1,362,779	+				+1.9
1,362,779	+				-1.9
1,362,779	+				+0.6
1,362,779	+				+0.2
1,362,787	-				-1.7
1,362,787	-				-1.9
1,362,787	-				-0.2
1,362,787	-				+1.7
1,362,808	+				+0.0
1,362,808	+				+1.8
1,362,822	+				-0.1
1,362,858	+				+0.1
1,362,862	+				+0.1
1,362,865	-				+0.2
1,362,866	-				+1.0
1,362,870	-				-0.1
1,362,876	-				+0.8
1,362,876	-				+0.5
1,362,924	+				+0.3
1,362,926	+				+0.1
1,362,934	-				+1.0
1,362,934	-				-0.3
1,362,943	+				+0.7
1,362,943	+				+0.4
1,362,951	-				+0.1
1,362,951	-				-0.7
1,363,025	+				+0.2
1,363,051	-				+0.6
1,363,067	-				+0.7
1,363,090	+				-0.9
1,363,113	-		GFF1339	0.13	-0.5
1,363,168	+		GFF1339	0.25	+0.8
1,363,173	+		GFF1339	0.26	+0.2
1,363,176	-		GFF1339	0.27	-0.2
1,363,181	-		GFF1339	0.28	-1.1
1,363,200	+		GFF1339	0.32	-0.6
1,363,200	+		GFF1339	0.32	-0.4
1,363,200	+		GFF1339	0.32	-0.5
1,363,200	+		GFF1339	0.32	+1.3
1,363,200	+		GFF1339	0.32	-3.1
1,363,205	+		GFF1339	0.33	-1.7
1,363,205	+		GFF1339	0.33	-1.1
1,363,205	+		GFF1339	0.33	+0.6
1,363,208	-		GFF1339	0.34	-0.8
1,363,213	-		GFF1339	0.35	+0.2
1,363,213	-		GFF1339	0.35	-1.9
1,363,213	-		GFF1339	0.35	-0.5
1,363,213	-		GFF1339	0.35	+0.7
1,363,213	-		GFF1339	0.35	-0.9
1,363,215	+		GFF1339	0.35	-0.5
1,363,223	+		GFF1339	0.37	-0.2
1,363,223	-		GFF1339	0.37	+0.3
1,363,237	-		GFF1339	0.40	-0.6
1,363,248	+		GFF1339	0.42	-0.4
1,363,249	+		GFF1339	0.43	-1.2
1,363,280	+		GFF1339	0.49	-0.0
1,363,288	+		GFF1339	0.51	-0.6
1,363,288	+		GFF1339	0.51	-0.1
1,363,288	+		GFF1339	0.51	-0.9
1,363,294	+		GFF1339	0.52	+0.1
1,363,312	+		GFF1339	0.56	+0.9
1,363,312	+		GFF1339	0.56	-0.6
1,363,312	+		GFF1339	0.56	+1.4
1,363,312	+		GFF1339	0.56	+0.0
1,363,317	+		GFF1339	0.57	+0.5
1,363,320	-		GFF1339	0.58	-0.4
1,363,320	-		GFF1339	0.58	+0.4
1,363,320	-		GFF1339	0.58	-0.2
1,363,325	-		GFF1339	0.59	-2.9
1,363,327	+		GFF1339	0.60	+0.8
1,363,335	-		GFF1339	0.61	+1.0
1,363,345	-		GFF1339	0.64	-0.6
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1,363,359	+		GFF1339	0.67	-1.9
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1,363,367	-		GFF1339	0.68	-2.1
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1,363,409	+		GFF1339	0.78	-2.2
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1,363,456	+		GFF1339	0.88	-2.3
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1,363,490	-				-0.6
1,363,492	+				+0.3
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1,363,526	-				+0.2
1,363,591	+				-0.4
1,363,598	-				+1.2
1,363,605	-				-1.2
1,363,670	+		GFF1340	0.20	-0.5
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1,363,795	+		GFF1340	0.78	-0.0
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