Strain Fitness in Sphingobium sp. HT1-2 around GFF1290

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,318,661	+				-0.3
1,318,661	+				-0.9
1,318,669	-				-0.2
1,318,675	+				-1.2
1,318,679	+				-0.1
1,318,682	-				-0.4
1,318,692	+				-2.0
1,318,697	+				-0.8
1,318,697	+				-0.1
1,318,697	+				-0.1
1,318,697	+				-2.8
1,318,697	+				+0.8
1,318,697	+				+0.9
1,318,697	+				+0.9
1,318,697	+				+0.6
1,318,697	+				-0.5
1,318,697	+				-0.9
1,318,697	+				-0.9
1,318,702	+				+1.0
1,318,705	-				-1.3
1,318,705	-				-0.2
1,318,705	-				-0.1
1,318,705	-				+0.8
1,318,707	+				+0.9
1,318,732	-				+1.8
1,318,732	-				+1.2
1,318,737	+				-2.6
1,318,737	+				+0.2
1,318,739	+				-0.3
1,318,739	+				+0.3
1,318,742	+				-0.2
1,318,747	+				+0.3
1,318,750	-				+0.1
1,318,757	-				+0.7
1,318,759	+				+0.4
1,318,781	+				-0.3
1,318,872	-				+0.7
1,318,885	-				-1.7
1,318,963	+		GFF1290	0.15	-2.2
1,318,976	-		GFF1290	0.16	+0.4
1,318,980	+		GFF1290	0.16	-2.4
1,318,985	+		GFF1290	0.16	+0.6
1,318,988	-		GFF1290	0.17	-1.6
1,318,993	-		GFF1290	0.17	+1.1
1,319,015	+		GFF1290	0.18	-1.2
1,319,023	-		GFF1290	0.19	-2.1
1,319,031	+		GFF1290	0.20	-0.4
1,319,119	+		GFF1290	0.25	-1.1
1,319,124	+		GFF1290	0.26	-0.0
1,319,129	+		GFF1290	0.26	+1.1
1,319,129	+		GFF1290	0.26	+0.1
1,319,129	+		GFF1290	0.26	-0.9
1,319,129	+		GFF1290	0.26	+0.6
1,319,130	-		GFF1290	0.26	+0.0
1,319,130	-		GFF1290	0.26	+0.5
1,319,137	-		GFF1290	0.27	+0.1
1,319,142	-		GFF1290	0.27	-0.3
1,319,156	+		GFF1290	0.28	+0.0
1,319,156	+		GFF1290	0.28	-0.8
1,319,164	-		GFF1290	0.28	-0.5
1,319,164	-		GFF1290	0.28	-0.0
1,319,177	+		GFF1290	0.29	+0.4
1,319,183	+		GFF1290	0.30	-0.3
1,319,184	+		GFF1290	0.30	+0.1
1,319,192	-		GFF1290	0.30	-1.4
1,319,198	-		GFF1290	0.31	-1.0
1,319,198	-		GFF1290	0.31	-0.7
1,319,202	+		GFF1290	0.31	-1.3
1,319,220	+		GFF1290	0.32	-0.2
1,319,260	+		GFF1290	0.35	-0.8
1,319,262	-		GFF1290	0.35	+0.4
1,319,306	-		GFF1290	0.38	-1.5
1,319,312	-		GFF1290	0.38	-1.4
1,319,335	+		GFF1290	0.40	+0.4
1,319,378	+		GFF1290	0.43	-0.1
1,319,378	+		GFF1290	0.43	-0.8
1,319,378	+		GFF1290	0.43	-0.3
1,319,383	+		GFF1290	0.43	+0.5
1,319,383	+		GFF1290	0.43	-0.2
1,319,383	+		GFF1290	0.43	-0.3
1,319,383	+		GFF1290	0.43	-0.3
1,319,386	-		GFF1290	0.43	+0.4
1,319,386	-		GFF1290	0.43	+1.0
1,319,386	-		GFF1290	0.43	-1.4
1,319,386	-		GFF1290	0.43	-0.8
1,319,386	-		GFF1290	0.43	-0.9
1,319,391	-		GFF1290	0.44	-1.9
1,319,404	-		GFF1290	0.45	-1.8
1,319,411	+		GFF1290	0.45	+0.4
1,319,411	+		GFF1290	0.45	+0.5
1,319,419	-		GFF1290	0.46	+0.1
1,319,424	+		GFF1290	0.46	-2.6
1,319,424	+		GFF1290	0.46	-0.1
1,319,432	-		GFF1290	0.47	+1.2
1,319,432	-		GFF1290	0.47	-1.7
1,319,432	-		GFF1290	0.47	+1.1
1,319,436	-		GFF1290	0.47	-0.6
1,319,436	-		GFF1290	0.47	-0.9
1,319,463	+		GFF1290	0.49	-0.2
1,319,526	-		GFF1290	0.53	-0.1
1,319,542	+		GFF1290	0.54	-1.2
1,319,542	+		GFF1290	0.54	-0.2
1,319,550	-		GFF1290	0.54	-0.4
1,319,550	-		GFF1290	0.54	+0.2
1,319,555	+		GFF1290	0.55	+0.3
1,319,555	+		GFF1290	0.55	+0.5
1,319,555	+		GFF1290	0.55	+1.4
1,319,587	+		GFF1290	0.57	-0.4
1,319,587	+		GFF1290	0.57	-0.5
1,319,604	-		GFF1290	0.58	+0.8
1,319,606	+		GFF1290	0.58	-0.0
1,319,606	+		GFF1290	0.58	+0.6
1,319,606	+		GFF1290	0.58	-1.1
1,319,606	+		GFF1290	0.58	-0.8
1,319,606	+		GFF1290	0.58	-0.8
1,319,606	+		GFF1290	0.58	-0.5
1,319,606	+		GFF1290	0.58	+0.1
1,319,606	+		GFF1290	0.58	+1.1
1,319,606	+		GFF1290	0.58	+1.2
1,319,606	+		GFF1290	0.58	-0.8
1,319,610	+		GFF1290	0.58	-0.7
1,319,614	-		GFF1290	0.59	+0.9
1,319,614	-		GFF1290	0.59	-0.0
1,319,614	-		GFF1290	0.59	-0.6
1,319,614	-		GFF1290	0.59	-2.2
1,319,614	-		GFF1290	0.59	+0.8
1,319,614	-		GFF1290	0.59	+1.0
1,319,614	-		GFF1290	0.59	-1.6
1,319,648	-		GFF1290	0.61	-1.8
1,319,650	-		GFF1290	0.61	+1.1
1,319,676	-		GFF1290	0.63	-1.0
1,319,678	+		GFF1290	0.63	-1.4
1,319,686	+		GFF1290	0.64	-1.9
1,319,701	+		GFF1290	0.65	-0.9
1,319,703	+		GFF1290	0.65	-1.4
1,319,705	+		GFF1290	0.65	+0.4
1,319,808	-		GFF1290	0.72	-0.9
1,319,854	-		GFF1290	0.75	+1.0
1,319,857	-		GFF1290	0.75	+1.0
1,319,864	-		GFF1290	0.76	-0.2
1,319,866	+		GFF1290	0.76	+0.5
1,319,866	-		GFF1290	0.76	-0.8
1,319,866	-		GFF1290	0.76	-0.4
1,319,897	+		GFF1290	0.78	-1.1
1,319,902	+		GFF1290	0.78	-0.8
1,319,905	-		GFF1290	0.78	-0.9
1,319,905	-		GFF1290	0.78	-0.2
1,319,907	+		GFF1290	0.78	-0.7
1,319,910	-		GFF1290	0.79	+1.3
1,319,910	-		GFF1290	0.79	-3.1
1,319,910	-		GFF1290	0.79	-1.0
1,319,920	-		GFF1290	0.79	-0.1
1,319,925	+		GFF1290	0.80	-0.3
1,319,933	-		GFF1290	0.80	+0.6
1,319,937	+		GFF1290	0.80	-2.4
1,319,937	+		GFF1290	0.80	-1.5
1,319,971	+		GFF1290	0.83	+0.6
1,320,013	-		GFF1290	0.86	+0.5
1,320,125	-				-0.0
1,320,143	+				-2.0
1,320,143	+				-0.0
1,320,143	+				-0.7
1,320,151	-				+0.8
1,320,151	-				-0.4
1,320,157	+				-1.3
1,320,157	+				+0.8
1,320,163	+				-0.7
1,320,167	+				-0.3
1,320,169	-				-0.3
1,320,170	-				-0.9
1,320,170	-				+0.4
1,320,170	-				-1.2
1,320,171	-				+0.8
1,320,222	+				-1.9
1,320,222	+				+0.9
1,320,282	-				-0.3
1,320,289	+				-1.1
1,320,306	+				-0.0
1,320,342	+		GFF1291	0.11	+0.1
1,320,342	+		GFF1291	0.11	-1.6
1,320,342	+		GFF1291	0.11	-0.4
1,320,350	-		GFF1291	0.13	-1.5
1,320,350	-		GFF1291	0.13	+0.6
1,320,357	+		GFF1291	0.14	-0.2
1,320,387	-		GFF1291	0.21	-1.6
1,320,400	+		GFF1291	0.24	-0.2
1,320,400	+		GFF1291	0.24	-1.8
1,320,413	+		GFF1291	0.27	+0.7
1,320,423	+		GFF1291	0.29	-0.3
1,320,423	+		GFF1291	0.29	-0.2
1,320,423	+		GFF1291	0.29	-0.1
1,320,423	+		GFF1291	0.29	-1.0
1,320,431	-		GFF1291	0.30	-2.1
1,320,431	-		GFF1291	0.30	-1.1
1,320,431	-		GFF1291	0.30	-0.8
1,320,436	+		GFF1291	0.32	+0.6
1,320,441	+		GFF1291	0.33	-1.7
1,320,444	-		GFF1291	0.33	+0.5
1,320,446	+		GFF1291	0.34	+0.9
1,320,449	-		GFF1291	0.34	-0.5
1,320,455	+		GFF1291	0.36	+1.2
1,320,460	-		GFF1291	0.37	-1.1
1,320,493	+		GFF1291	0.44	-0.7
1,320,511	+		GFF1291	0.48	-1.0
1,320,519	-		GFF1291	0.50	+0.1
1,320,622	+		GFF1291	0.72	+1.2
1,320,657	+		GFF1291	0.80	-2.3
1,320,657	+		GFF1291	0.80	-0.1
1,320,657	+		GFF1291	0.80	-0.9
1,320,657	+		GFF1291	0.80	-0.5
1,320,704	+				+0.3
1,320,712	-				-0.4
1,320,712	-				+1.0
1,320,714	+				+0.7
1,320,717	-				-0.5
1,320,722	-				-0.1
1,320,758	+				+0.1
1,320,763	+				+1.6
1,320,771	-		GFF1292	0.12	+0.2
1,320,771	-		GFF1292	0.12	-2.4
1,320,771	-		GFF1292	0.12	-1.4
1,320,771	-		GFF1292	0.12	+1.8
1,320,771	-		GFF1292	0.12	+0.3
1,320,773	+		GFF1292	0.12	+0.1
1,320,775	-		GFF1292	0.13	-1.4
1,320,786	-		GFF1292	0.17	-0.5
1,320,797	-		GFF1292	0.20	-1.3
1,320,820	-		GFF1292	0.27	-0.5
1,320,829	+		GFF1292	0.30	+1.3
1,320,841	-		GFF1292	0.34	-0.3
1,320,852	+		GFF1292	0.37	+0.1
1,320,873	-		GFF1292	0.44	-0.0
1,320,889	-		GFF1292	0.49	-0.7
1,320,889	-		GFF1292	0.49	-1.8
1,320,891	+		GFF1292	0.50	+0.2
1,320,891	+		GFF1292	0.50	+0.5
1,320,896	+		GFF1292	0.51	-2.2
1,320,899	-		GFF1292	0.52	-0.9
1,320,899	-		GFF1292	0.52	-0.1
1,320,929	-		GFF1292	0.62	-0.2
1,320,943	+		GFF1292	0.66	-0.0
1,320,965	+		GFF1292	0.73	-1.7
1,320,965	+		GFF1292	0.73	-0.4
1,320,970	+		GFF1292	0.75	-0.1
1,320,970	+		GFF1292	0.75	+0.1
1,320,970	+		GFF1292	0.75	+0.6
1,320,973	-		GFF1292	0.76	+0.9
1,320,973	-		GFF1292	0.76	+1.0
1,320,973	-		GFF1292	0.76	-2.7
1,320,973	-		GFF1292	0.76	+0.1
1,320,973	-		GFF1292	0.76	+0.9
1,320,978	-		GFF1292	0.77	+0.0
1,320,978	-		GFF1292	0.77	+0.6
1,321,026	-				-1.6
1,321,026	-				+1.4
1,321,026	-				-0.3
1,321,049	+				+1.1
1,321,051	-				+0.7
1,321,051	-				-1.2
1,321,162	-		GFF1293	0.22	-0.0
1,321,170	-		GFF1293	0.24	-1.1
1,321,171	-		GFF1293	0.24	-0.0