Strain Fitness in Sphingobium sp. HT1-2 around GFF1270

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,298,467	+		GFF1268	0.83	+0.2
1,298,467	+		GFF1268	0.83	-0.2
1,298,467	+		GFF1268	0.83	+0.2
1,298,467	+		GFF1268	0.83	-0.3
1,298,510	+				+0.4
1,298,531	-				-0.1
1,298,531	-				-0.6
1,298,531	-				-0.6
1,298,531	-				+0.2
1,298,531	-				+0.4
1,298,541	+				-1.4
1,298,542	+				+0.1
1,298,549	-				-1.6
1,298,550	-				+0.8
1,298,628	+		GFF1269	0.14	+0.1
1,298,682	-		GFF1269	0.22	+0.1
1,298,682	-		GFF1269	0.22	+0.8
1,298,713	+		GFF1269	0.26	+0.0
1,298,719	-		GFF1269	0.27	+0.4
1,298,769	+		GFF1269	0.34	-0.5
1,298,801	+		GFF1269	0.38	-1.0
1,298,925	-		GFF1269	0.56	+0.6
1,298,944	+		GFF1269	0.58	+1.3
1,298,950	+		GFF1269	0.59	+0.6
1,298,958	-		GFF1269	0.60	-0.1
1,299,101	-		GFF1269	0.80	+0.3
1,299,101	-		GFF1269	0.80	+0.9
1,299,147	-		GFF1269	0.87	+0.7
1,299,187	+				-1.2
1,299,187	+				-2.1
1,299,195	-				+0.3
1,299,236	-				-0.7
1,299,249	+				-0.5
1,299,262	-				+0.8
1,299,267	-				-0.3
1,299,289	-				-0.9
1,299,289	-				+0.1
1,299,299	-				+0.7
1,299,402	+				-0.3
1,299,402	+				-0.7
1,299,470	+				-0.4
1,299,471	-				-0.0
1,299,478	-				-0.4
1,299,478	-				+0.9
1,299,517	+		GFF1270	0.11	-0.4
1,299,530	-		GFF1270	0.13	+1.3
1,299,553	-		GFF1270	0.16	-1.2
1,299,555	+		GFF1270	0.16	-0.9
1,299,570	+		GFF1270	0.18	-1.9
1,299,601	+		GFF1270	0.22	+0.2
1,299,609	-		GFF1270	0.23	-0.3
1,299,614	+		GFF1270	0.24	+1.1
1,299,635	+		GFF1270	0.26	+0.1
1,299,635	+		GFF1270	0.26	+0.6
1,299,635	+		GFF1270	0.26	-0.2
1,299,635	+		GFF1270	0.26	+0.1
1,299,635	+		GFF1270	0.26	+0.3
1,299,635	+		GFF1270	0.26	-0.8
1,299,635	+		GFF1270	0.26	+0.3
1,299,635	+		GFF1270	0.26	-0.7
1,299,635	+		GFF1270	0.26	-0.4
1,299,635	+		GFF1270	0.26	-1.1
1,299,635	+		GFF1270	0.26	-0.3
1,299,640	+		GFF1270	0.27	+0.5
1,299,640	+		GFF1270	0.27	-0.1
1,299,643	-		GFF1270	0.28	+0.2
1,299,643	-		GFF1270	0.28	-0.2
1,299,643	-		GFF1270	0.28	+0.6
1,299,643	-		GFF1270	0.28	+0.9
1,299,643	-		GFF1270	0.28	-0.4
1,299,643	-		GFF1270	0.28	-1.1
1,299,643	-		GFF1270	0.28	-0.2
1,299,643	-		GFF1270	0.28	+0.7
1,299,643	-		GFF1270	0.28	+0.1
1,299,643	-		GFF1270	0.28	-2.6
1,299,643	-		GFF1270	0.28	-0.6
1,299,643	-		GFF1270	0.28	-1.1
1,299,643	-		GFF1270	0.28	+0.3
1,299,643	-		GFF1270	0.28	-3.0
1,299,648	-		GFF1270	0.28	+0.1
1,299,659	+		GFF1270	0.30	+0.6
1,299,696	+		GFF1270	0.34	-1.1
1,299,713	+		GFF1270	0.37	-0.4
1,299,717	-		GFF1270	0.37	-0.5
1,299,726	+		GFF1270	0.38	-1.2
1,299,734	-		GFF1270	0.39	+1.1
1,299,755	-		GFF1270	0.42	-1.3
1,299,768	-		GFF1270	0.44	-0.2
1,299,793	-		GFF1270	0.47	+0.9
1,299,793	-		GFF1270	0.47	-0.8
1,299,793	-		GFF1270	0.47	-1.3
1,299,810	+		GFF1270	0.49	+0.0
1,299,833	+		GFF1270	0.52	+0.6
1,299,858	-		GFF1270	0.55	+0.8
1,299,896	+		GFF1270	0.60	-0.7
1,299,902	+		GFF1270	0.61	-1.9
1,299,914	+		GFF1270	0.63	+0.4
1,299,914	+		GFF1270	0.63	-1.5
1,299,914	+		GFF1270	0.63	-2.3
1,299,917	-		GFF1270	0.63	-0.8
1,299,922	-		GFF1270	0.64	-0.0
1,299,922	-		GFF1270	0.64	-1.8
1,299,961	+		GFF1270	0.69	+0.7
1,299,961	+		GFF1270	0.69	+0.6
1,299,962	-		GFF1270	0.69	-0.8
1,299,969	-		GFF1270	0.70	+0.3
1,299,973	+		GFF1270	0.70	+0.1
1,299,977	+		GFF1270	0.71	+0.2
1,299,985	-		GFF1270	0.72	+1.0
1,299,989	+		GFF1270	0.72	-0.6
1,300,043	+		GFF1270	0.79	-0.5
1,300,062	+		GFF1270	0.82	+1.5
1,300,070	-		GFF1270	0.83	-0.0
1,300,114	-		GFF1270	0.88	-2.3
1,300,118	-		GFF1270	0.89	+0.1
1,300,136	-				-0.9
1,300,150	-				-0.3
1,300,154	-				+0.1
1,300,156	-				+0.4
1,300,165	+				-0.0
1,300,251	+				-0.3
1,300,259	-				+1.4
1,300,328	+				+0.3
1,300,388	+		GFF1271	0.16	+1.1
1,300,388	+		GFF1271	0.16	+1.0
1,300,398	+		GFF1271	0.17	+0.6
1,300,398	+		GFF1271	0.17	+2.3
1,300,403	+		GFF1271	0.17	+0.7
1,300,411	-		GFF1271	0.18	-0.8
1,300,417	+		GFF1271	0.19	+0.6
1,300,435	-		GFF1271	0.21	-0.8
1,300,471	-		GFF1271	0.25	-1.0
1,300,538	+		GFF1271	0.32	+1.5
1,300,544	+		GFF1271	0.32	-0.8
1,300,557	-		GFF1271	0.34	+0.2
1,300,562	+		GFF1271	0.34	-0.3
1,300,593	+		GFF1271	0.38	+0.6
1,300,593	+		GFF1271	0.38	+1.5
1,300,593	+		GFF1271	0.38	-0.8
1,300,615	-		GFF1271	0.40	+0.7
1,300,696	+		GFF1271	0.49	-0.4
1,300,696	+		GFF1271	0.49	+0.3
1,300,696	+		GFF1271	0.49	-0.9
1,300,696	+		GFF1271	0.49	+0.3
1,300,701	+		GFF1271	0.49	+1.0
1,300,701	+		GFF1271	0.49	+0.2
1,300,701	+		GFF1271	0.49	-0.1
1,300,701	+		GFF1271	0.49	-0.1
1,300,701	+		GFF1271	0.49	+0.0
1,300,704	-		GFF1271	0.50	-0.8
1,300,704	-		GFF1271	0.50	+0.5
1,300,709	-		GFF1271	0.50	-1.3
1,300,709	-		GFF1271	0.50	+0.1
1,300,709	-		GFF1271	0.50	+0.0
1,300,725	-		GFF1271	0.52	-0.6
1,300,796	+		GFF1271	0.59	-0.3
1,300,810	-		GFF1271	0.61	-2.9
1,300,862	+		GFF1271	0.67	+0.3
1,300,886	+		GFF1271	0.69	-1.3
1,300,886	+		GFF1271	0.69	+0.5
1,300,886	+		GFF1271	0.69	+1.3
1,300,886	+		GFF1271	0.69	-0.5
1,300,894	-		GFF1271	0.70	+0.3
1,300,894	-		GFF1271	0.70	-0.3
1,300,914	+		GFF1271	0.72	+0.5
1,300,920	-		GFF1271	0.73	-0.5
1,300,934	+		GFF1271	0.74	+1.3
1,300,942	-		GFF1271	0.75	+1.1
1,300,942	-		GFF1271	0.75	+1.3
1,300,952	+		GFF1271	0.76	-0.3
1,300,955	-		GFF1271	0.77	-1.9
1,300,966	-		GFF1271	0.78	-1.5
1,301,000	-		GFF1271	0.81	-0.5
1,301,003	+		GFF1271	0.82	+1.0
1,301,011	-		GFF1271	0.83	+0.7
1,301,060	+		GFF1271	0.88	-0.2
1,301,065	+		GFF1271	0.88	-1.2
1,301,068	-		GFF1271	0.89	+0.7
1,301,078	-		GFF1271	0.90	+1.2
1,301,087	-				-1.7
1,301,095	-				-0.8
1,301,117	+				+1.0
1,301,145	-				+0.1
1,301,169	-				+0.1
1,301,192	-				-0.7
1,301,192	-				+0.3
1,301,192	-				+0.9
1,301,192	-				+0.1
1,301,201	+				-0.3
1,301,202	+				-0.0