Strain Fitness in Sphingobium sp. HT1-2 around GFF1261

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,288,979	+				-1.6
1,288,982	-				-0.3
1,288,987	-				-0.1
1,288,987	-				-2.0
1,288,987	-				-0.2
1,288,987	-				-1.0
1,288,989	+				+0.6
1,288,989	+				-0.6
1,289,036	+				-0.1
1,289,038	+				-1.2
1,289,043	+				-0.4
1,289,046	-				-0.7
1,289,056	-				-0.6
1,289,061	+				+0.0
1,289,069	+				+0.5
1,289,110	+				-1.3
1,289,110	+				+0.5
1,289,110	+				-1.2
1,289,110	+				+0.5
1,289,110	+				-0.3
1,289,110	+				+0.2
1,289,110	+				+0.9
1,289,110	+				-2.2
1,289,118	-				-0.4
1,289,118	-				+0.7
1,289,118	-				+0.7
1,289,118	-				-0.9
1,289,118	-				+0.7
1,289,118	-				-1.5
1,289,173	+		GFF1260	0.13	-0.9
1,289,173	+		GFF1260	0.13	-0.3
1,289,173	+		GFF1260	0.13	-0.9
1,289,173	+		GFF1260	0.13	+0.1
1,289,174	+		GFF1260	0.13	-1.4
1,289,201	+		GFF1260	0.16	-0.5
1,289,223	+		GFF1260	0.18	-1.6
1,289,223	+		GFF1260	0.18	-1.9
1,289,226	-		GFF1260	0.19	-2.0
1,289,227	+		GFF1260	0.19	-0.5
1,289,233	+		GFF1260	0.19	-0.2
1,289,247	+		GFF1260	0.21	-0.5
1,289,255	-		GFF1260	0.22	-1.6
1,289,255	-		GFF1260	0.22	+1.2
1,289,274	-		GFF1260	0.24	+1.1
1,289,274	-		GFF1260	0.24	+0.0
1,289,276	+		GFF1260	0.24	+0.2
1,289,277	+		GFF1260	0.24	-1.7
1,289,291	+		GFF1260	0.26	-0.2
1,289,296	+		GFF1260	0.26	-0.6
1,289,301	+		GFF1260	0.27	-0.5
1,289,309	-		GFF1260	0.28	-0.6
1,289,317	+		GFF1260	0.28	-0.4
1,289,323	+		GFF1260	0.29	-0.0
1,289,329	-		GFF1260	0.30	-0.9
1,289,341	+		GFF1260	0.31	+0.9
1,289,364	+		GFF1260	0.34	-0.4
1,289,364	+		GFF1260	0.34	-0.7
1,289,367	-		GFF1260	0.34	-1.0
1,289,368	+		GFF1260	0.34	-0.4
1,289,372	-		GFF1260	0.34	-0.1
1,289,376	-		GFF1260	0.35	+0.2
1,289,384	+		GFF1260	0.36	+0.2
1,289,422	+		GFF1260	0.40	-0.3
1,289,422	-		GFF1260	0.40	+0.6
1,289,427	+		GFF1260	0.40	-0.0
1,289,427	+		GFF1260	0.40	+0.3
1,289,432	+		GFF1260	0.41	-0.5
1,289,435	-		GFF1260	0.41	+0.2
1,289,435	-		GFF1260	0.41	+1.1
1,289,436	+		GFF1260	0.41	+0.3
1,289,454	-		GFF1260	0.43	-0.4
1,289,463	+		GFF1260	0.44	+0.2
1,289,463	+		GFF1260	0.44	-0.4
1,289,466	-		GFF1260	0.45	-0.4
1,289,480	+		GFF1260	0.46	-0.3
1,289,480	+		GFF1260	0.46	-1.4
1,289,480	+		GFF1260	0.46	-0.9
1,289,488	-		GFF1260	0.47	+0.0
1,289,488	-		GFF1260	0.47	-0.3
1,289,488	-		GFF1260	0.47	+0.8
1,289,493	-		GFF1260	0.47	-1.1
1,289,504	+		GFF1260	0.49	-0.5
1,289,504	+		GFF1260	0.49	+1.0
1,289,504	+		GFF1260	0.49	-0.6
1,289,504	+		GFF1260	0.49	-0.5
1,289,512	-		GFF1260	0.49	+0.6
1,289,512	-		GFF1260	0.49	-2.5
1,289,512	-		GFF1260	0.49	+0.1
1,289,512	-		GFF1260	0.49	-1.5
1,289,512	-		GFF1260	0.49	+0.3
1,289,523	+		GFF1260	0.51	-0.6
1,289,528	-		GFF1260	0.51	-1.7
1,289,530	-		GFF1260	0.51	-1.0
1,289,530	-		GFF1260	0.51	-0.4
1,289,531	-		GFF1260	0.52	-0.9
1,289,533	+		GFF1260	0.52	-1.1
1,289,541	+		GFF1260	0.53	+0.4
1,289,541	+		GFF1260	0.53	+0.1
1,289,541	+		GFF1260	0.53	-0.2
1,289,541	+		GFF1260	0.53	-1.7
1,289,541	-		GFF1260	0.53	-0.7
1,289,584	+		GFF1260	0.57	-0.9
1,289,609	-		GFF1260	0.60	+0.9
1,289,609	-		GFF1260	0.60	+0.2
1,289,622	-		GFF1260	0.61	-2.6
1,289,637	+		GFF1260	0.63	-0.8
1,289,652	+		GFF1260	0.65	+0.3
1,289,679	+		GFF1260	0.67	+0.3
1,289,704	-		GFF1260	0.70	-0.2
1,289,731	-		GFF1260	0.73	-0.3
1,289,780	-		GFF1260	0.78	-0.8
1,289,781	-		GFF1260	0.78	-0.7
1,289,797	+		GFF1260	0.80	-1.9
1,289,817	-		GFF1260	0.82	+0.3
1,289,861	+		GFF1260	0.87	-1.0
1,289,873	-		GFF1260	0.88	-0.4
1,289,873	-		GFF1260	0.88	-0.1
1,289,873	-		GFF1260	0.88	-0.5
1,289,873	-		GFF1260	0.88	-0.9
1,289,873	-		GFF1260	0.88	-1.6
1,289,901	-				-0.6
1,289,906	+				+1.4
1,289,911	-				-0.0
1,289,911	-				-1.5
1,289,914	-				-2.6
1,289,959	+				+0.5
1,289,966	+				+0.8
1,289,974	-				+0.9
1,289,975	-				+0.9
1,290,016	+				-0.5
1,290,019	-				-0.4
1,290,022	-				+0.4
1,290,022	-				+0.8
1,290,024	-				+1.3
1,290,024	-				+0.3
1,290,032	+				-0.8
1,290,051	+				-1.4
1,290,059	-				-0.7
1,290,062	+				-0.8
1,290,064	-				-1.8
1,290,065	-				-2.5
1,290,075	-		GFF1261	0.10	-2.0
1,290,075	-		GFF1261	0.10	-1.2
1,290,097	+		GFF1261	0.13	+0.7
1,290,105	+		GFF1261	0.13	+0.6
1,290,120	-		GFF1261	0.15	-0.7
1,290,160	-		GFF1261	0.19	-1.2
1,290,165	-		GFF1261	0.20	-1.8
1,290,165	-		GFF1261	0.20	-0.1
1,290,170	-		GFF1261	0.20	-1.4
1,290,172	+		GFF1261	0.21	-0.3
1,290,172	+		GFF1261	0.21	+0.0
1,290,209	+		GFF1261	0.25	-2.6
1,290,209	-		GFF1261	0.25	+0.1
1,290,213	-		GFF1261	0.25	-1.6
1,290,226	-		GFF1261	0.26	-0.1
1,290,257	-		GFF1261	0.30	-1.4
1,290,259	+		GFF1261	0.30	+0.3
1,290,262	-		GFF1261	0.30	-0.5
1,290,274	+		GFF1261	0.31	-0.4
1,290,277	+		GFF1261	0.32	+0.0
1,290,282	-		GFF1261	0.32	-0.1
1,290,312	+		GFF1261	0.35	+0.3
1,290,327	+		GFF1261	0.37	+1.1
1,290,330	-		GFF1261	0.37	-1.1
1,290,366	+		GFF1261	0.41	+0.0
1,290,372	+		GFF1261	0.42	+1.0
1,290,375	-		GFF1261	0.42	-1.1
1,290,379	-		GFF1261	0.43	-1.8
1,290,403	-		GFF1261	0.45	-0.3
1,290,404	-		GFF1261	0.45	-0.2
1,290,418	+		GFF1261	0.47	-1.8
1,290,418	+		GFF1261	0.47	-0.6
1,290,418	+		GFF1261	0.47	+0.3
1,290,421	-		GFF1261	0.47	-0.4
1,290,426	-		GFF1261	0.48	+0.5
1,290,426	-		GFF1261	0.48	-0.4
1,290,431	-		GFF1261	0.48	+0.9
1,290,433	+		GFF1261	0.48	+1.6
1,290,433	+		GFF1261	0.48	-1.3
1,290,437	+		GFF1261	0.49	-1.6
1,290,444	+		GFF1261	0.49	-0.1
1,290,444	+		GFF1261	0.49	+0.5
1,290,450	-		GFF1261	0.50	+0.5
1,290,452	-		GFF1261	0.50	+0.2
1,290,453	+		GFF1261	0.50	+0.6
1,290,463	+		GFF1261	0.51	-1.3
1,290,468	+		GFF1261	0.52	-0.1
1,290,473	+		GFF1261	0.53	-1.6
1,290,473	+		GFF1261	0.53	+0.3
1,290,477	+		GFF1261	0.53	+0.6
1,290,481	-		GFF1261	0.53	-1.2
1,290,482	+		GFF1261	0.54	-0.2
1,290,482	+		GFF1261	0.54	-0.4
1,290,493	-		GFF1261	0.55	-0.5
1,290,495	-		GFF1261	0.55	-1.0
1,290,495	-		GFF1261	0.55	-0.7
1,290,495	-		GFF1261	0.55	-1.5
1,290,495	-		GFF1261	0.55	-0.0
1,290,495	-		GFF1261	0.55	-1.0
1,290,510	-		GFF1261	0.56	-2.4
1,290,517	-		GFF1261	0.57	-0.4
1,290,556	+		GFF1261	0.61	-0.7
1,290,564	-		GFF1261	0.62	+0.2
1,290,567	+		GFF1261	0.63	-1.4
1,290,586	-		GFF1261	0.65	-1.1
1,290,602	-		GFF1261	0.66	+1.4
1,290,604	+		GFF1261	0.66	-1.4
1,290,615	+		GFF1261	0.68	+0.6
1,290,615	+		GFF1261	0.68	-1.5
1,290,615	+		GFF1261	0.68	-0.1
1,290,615	+		GFF1261	0.68	+0.3
1,290,615	+		GFF1261	0.68	+0.1
1,290,615	+		GFF1261	0.68	-0.7
1,290,615	+		GFF1261	0.68	+0.9
1,290,615	+		GFF1261	0.68	-1.1
1,290,615	+		GFF1261	0.68	-0.4
1,290,623	-		GFF1261	0.68	+1.7
1,290,623	-		GFF1261	0.68	-0.9
1,290,623	-		GFF1261	0.68	-0.3
1,290,623	-		GFF1261	0.68	-0.4
1,290,623	-		GFF1261	0.68	+1.1
1,290,623	-		GFF1261	0.68	-1.0
1,290,633	+		GFF1261	0.70	-0.2
1,290,641	-		GFF1261	0.70	+0.4
1,290,651	+		GFF1261	0.71	-0.1
1,290,654	-		GFF1261	0.72	-1.5
1,290,666	+		GFF1261	0.73	+0.1
1,290,666	+		GFF1261	0.73	-0.8
1,290,666	+		GFF1261	0.73	+0.4
1,290,666	+		GFF1261	0.73	+0.5
1,290,666	+		GFF1261	0.73	-1.2
1,290,666	+		GFF1261	0.73	-2.1
1,290,671	+		GFF1261	0.74	+0.7
1,290,673	-		GFF1261	0.74	+0.8
1,290,674	-		GFF1261	0.74	+1.7
1,290,674	-		GFF1261	0.74	-0.2
1,290,674	-		GFF1261	0.74	-1.0
1,290,707	+		GFF1261	0.77	-0.0
1,290,710	+		GFF1261	0.78	-0.5
1,290,710	+		GFF1261	0.78	+0.5
1,290,718	-		GFF1261	0.79	-1.4
1,290,720	+		GFF1261	0.79	+1.2
1,290,723	+		GFF1261	0.79	-0.7
1,290,728	-		GFF1261	0.80	-1.7
1,290,786	+		GFF1261	0.86	+0.8
1,290,796	-		GFF1261	0.87	-1.4
1,290,806	-		GFF1261	0.88	-1.9
1,290,815	+		GFF1261	0.89	-0.8
1,290,825	+				-1.6
1,290,854	+				+0.5
1,290,854	-				-0.2
1,290,856	+				-1.2
1,290,864	+				-0.0
1,290,864	+				-1.6
1,290,864	+				-1.2
1,290,893	+				-0.3
1,290,893	+				+0.6
1,290,895	-				-0.9
1,290,898	+				+0.5
1,290,901	-				+0.8
1,290,901	-				-0.2
1,290,901	-				-0.8
1,290,906	-				+0.6
1,290,929	+				-0.1
1,290,954	-				-0.1
1,290,955	-				-0.5
1,290,984	+				-1.9
1,290,984	+				-2.4
1,290,994	+				+0.7
1,291,019	+		GFF1262	0.10	+1.4
1,291,019	+		GFF1262	0.10	+0.6
1,291,019	+		GFF1262	0.10	+0.3
1,291,019	+		GFF1262	0.10	-2.1
1,291,027	-		GFF1262	0.11	+0.7
1,291,032	-		GFF1262	0.12	-0.7
1,291,032	-		GFF1262	0.12	+0.3
1,291,046	-		GFF1262	0.13	-0.8
1,291,061	+		GFF1262	0.15	+0.8
1,291,064	-		GFF1262	0.15	+1.0
1,291,064	-		GFF1262	0.15	+0.2
1,291,064	-		GFF1262	0.15	-0.7
1,291,087	+		GFF1262	0.17	-0.5
1,291,094	+		GFF1262	0.18	-1.2
1,291,095	-		GFF1262	0.18	-0.7
1,291,102	-		GFF1262	0.19	-1.0
1,291,102	-		GFF1262	0.19	+1.0
1,291,115	+		GFF1262	0.20	+0.5
1,291,139	+		GFF1262	0.23	-0.1
1,291,144	+		GFF1262	0.23	-0.3
1,291,152	-		GFF1262	0.24	+0.3
1,291,171	+		GFF1262	0.26	-2.2
1,291,189	+		GFF1262	0.28	-1.6
1,291,194	+		GFF1262	0.28	-0.0
1,291,197	-		GFF1262	0.29	+0.5
1,291,202	-		GFF1262	0.29	-0.5
1,291,208	+		GFF1262	0.30	-1.9
1,291,226	-		GFF1262	0.32	+0.3
1,291,232	+		GFF1262	0.32	-1.9
1,291,271	-		GFF1262	0.36	-1.2
1,291,273	+		GFF1262	0.37	+0.4
1,291,306	-		GFF1262	0.40	+0.2
1,291,306	-		GFF1262	0.40	+0.3
1,291,308	+		GFF1262	0.40	+0.0
1,291,308	+		GFF1262	0.40	-1.5
1,291,312	-		GFF1262	0.41	-1.9
1,291,317	-		GFF1262	0.41	-1.0
1,291,317	-		GFF1262	0.41	-0.8
1,291,327	-		GFF1262	0.42	-1.0
1,291,424	+		GFF1262	0.52	-0.5
1,291,424	+		GFF1262	0.52	-1.1
1,291,446	+		GFF1262	0.55	-0.2
1,291,463	+		GFF1262	0.56	+0.4
1,291,471	+		GFF1262	0.57	+0.4
1,291,471	+		GFF1262	0.57	-0.5
1,291,471	+		GFF1262	0.57	+0.4
1,291,479	-		GFF1262	0.58	-0.6
1,291,479	-		GFF1262	0.58	-0.7
1,291,498	-		GFF1262	0.60	-1.7
1,291,538	-		GFF1262	0.64	-2.8
1,291,538	-		GFF1262	0.64	+2.1
1,291,538	-		GFF1262	0.64	-1.6
1,291,548	+		GFF1262	0.65	+1.6
1,291,548	+		GFF1262	0.65	-0.0
1,291,552	+		GFF1262	0.66	+1.2
1,291,556	-		GFF1262	0.66	-0.4
1,291,560	-		GFF1262	0.66	-2.0
1,291,560	-		GFF1262	0.66	-2.4
1,291,565	-		GFF1262	0.67	-2.0
1,291,574	+		GFF1262	0.68	-0.5
1,291,576	+		GFF1262	0.68	-1.4
1,291,576	+		GFF1262	0.68	+0.9
1,291,590	-		GFF1262	0.69	-0.4
1,291,590	-		GFF1262	0.69	-0.0
1,291,595	-		GFF1262	0.70	-0.0
1,291,605	-		GFF1262	0.71	-0.5
1,291,605	-		GFF1262	0.71	+0.2
1,291,654	+		GFF1262	0.76	-0.1
1,291,654	+		GFF1262	0.76	+0.3
1,291,662	-		GFF1262	0.77	+0.0
1,291,672	+		GFF1262	0.78	-0.4
1,291,678	+		GFF1262	0.79	+0.1
1,291,720	-		GFF1262	0.83	+0.3
1,291,724	-		GFF1262	0.83	+1.4
1,291,738	-		GFF1262	0.85	+0.2
1,291,742	+		GFF1262	0.85	-1.8
1,291,747	+		GFF1262	0.86	-2.3
1,291,747	+		GFF1262	0.86	-0.3
1,291,747	+		GFF1262	0.86	-2.2
1,291,747	+		GFF1262	0.86	-0.6
1,291,747	+		GFF1262	0.86	+0.3
1,291,747	+		GFF1262	0.86	-1.9
1,291,747	+		GFF1262	0.86	+0.9
1,291,747	+		GFF1262	0.86	+1.4
1,291,747	+		GFF1262	0.86	-1.0
1,291,750	-		GFF1262	0.86	-0.0
1,291,755	-		GFF1262	0.87	+0.0
1,291,755	-		GFF1262	0.87	-0.5
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