Strain Fitness in Sphingobium sp. HT1-2 around GFF1245

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,272,550	+		GFF1243	0.82	-2.2
1,272,590	+		GFF1243	0.83	-0.2
1,272,590	+		GFF1243	0.83	+0.3
1,272,598	-		GFF1243	0.84	-0.6
1,272,598	-		GFF1243	0.84	-0.1
1,272,599	+		GFF1243	0.84	+0.6
1,272,603	-		GFF1243	0.84	-0.5
1,272,612	-		GFF1243	0.84	+0.4
1,272,622	-		GFF1243	0.85	+0.8
1,272,622	-		GFF1243	0.85	-0.2
1,272,624	+		GFF1243	0.85	-0.1
1,272,631	-		GFF1243	0.85	+0.4
1,272,631	-		GFF1243	0.85	-1.4
1,272,631	-		GFF1243	0.85	+1.1
1,272,650	-		GFF1243	0.86	-0.8
1,272,655	+		GFF1243	0.86	+0.8
1,272,655	+		GFF1243	0.86	+0.8
1,272,664	+		GFF1243	0.86	-2.1
1,272,678	+		GFF1243	0.87	+0.4
1,272,686	-		GFF1243	0.87	-0.2
1,272,686	-		GFF1243	0.87	-0.9
1,272,686	-		GFF1243	0.87	+0.1
1,272,686	-		GFF1243	0.87	+0.3
1,272,686	-		GFF1243	0.87	-1.0
1,272,720	+		GFF1243	0.89	-0.8
1,272,728	-		GFF1243	0.89	+1.2
1,272,756	-				-1.4
1,272,758	-				+0.8
1,272,760	+				+0.7
1,272,760	+				-1.0
1,272,768	-				-0.1
1,272,799	-				+1.1
1,272,802	+				+0.7
1,272,802	+				+0.7
1,272,802	+				+0.1
1,272,802	+				-0.2
1,272,802	+				-1.6
1,272,802	+				-2.1
1,272,810	-				-0.8
1,272,810	-				+0.8
1,272,810	-				+0.0
1,272,810	-				-2.0
1,272,846	+				+1.2
1,272,848	-				-0.6
1,272,853	+				-0.4
1,272,853	-				+1.4
1,272,858	+				+0.7
1,272,861	-				+0.1
1,272,877	+				-0.0
1,272,877	+				-1.9
1,272,877	+				+0.1
1,272,885	-				-1.9
1,272,885	-				+0.5
1,272,885	-				-1.0
1,272,890	-				-1.5
1,272,895	+				+0.1
1,272,913	-				+0.5
1,272,917	+				+0.9
1,272,917	+				-1.1
1,272,917	+				-0.5
1,272,922	+				-1.0
1,272,923	-				+0.3
1,272,925	-				-0.3
1,272,925	-				-0.4
1,272,925	-				+0.6
1,272,925	-				-0.4
1,272,974	-				+0.4
1,272,974	-				-0.1
1,272,984	+				-0.1
1,272,984	-				-1.6
1,272,992	-				-0.7
1,273,029	+				-1.2
1,273,030	+				-1.2
1,273,030	+				+0.0
1,273,076	+				+0.5
1,273,086	+				-0.7
1,273,090	-				-0.9
1,273,140	+				-0.9
1,273,140	+				+1.0
1,273,150	+				+0.1
1,273,150	+				-1.5
1,273,150	+				+2.1
1,273,150	+				+0.3
1,273,152	+				-0.4
1,273,158	-				-0.8
1,273,158	-				+1.3
1,273,158	-				+0.5
1,273,160	+				+0.3
1,273,168	+				-1.9
1,273,210	+		GFF1244	0.15	-0.5
1,273,215	+		GFF1244	0.16	+1.8
1,273,218	-		GFF1244	0.17	-0.3
1,273,218	-		GFF1244	0.17	+0.7
1,273,220	+		GFF1244	0.17	-0.0
1,273,220	+		GFF1244	0.17	-1.1
1,273,220	+		GFF1244	0.17	+0.8
1,273,220	+		GFF1244	0.17	-1.0
1,273,225	+		GFF1244	0.19	+0.0
1,273,228	-		GFF1244	0.19	-1.3
1,273,228	-		GFF1244	0.19	-0.6
1,273,228	-		GFF1244	0.19	-2.5
1,273,228	-		GFF1244	0.19	+0.9
1,273,233	-		GFF1244	0.21	+1.1
1,273,233	-		GFF1244	0.21	+1.4
1,273,233	-		GFF1244	0.21	-0.6
1,273,233	-		GFF1244	0.21	+0.7
1,273,233	-		GFF1244	0.21	-1.1
1,273,233	-		GFF1244	0.21	+0.6
1,273,233	-		GFF1244	0.21	+0.5
1,273,238	-		GFF1244	0.22	-0.2
1,273,248	+		GFF1244	0.25	-0.6
1,273,248	+		GFF1244	0.25	-2.0
1,273,253	+		GFF1244	0.26	-0.9
1,273,258	+		GFF1244	0.27	-0.4
1,273,258	+		GFF1244	0.27	-1.9
1,273,258	+		GFF1244	0.27	-0.4
1,273,261	-		GFF1244	0.28	-0.9
1,273,266	-		GFF1244	0.29	-0.5
1,273,266	-		GFF1244	0.29	+0.3
1,273,281	+		GFF1244	0.33	-1.2
1,273,284	-		GFF1244	0.34	-1.0
1,273,286	+		GFF1244	0.35	+0.2
1,273,286	+		GFF1244	0.35	+0.8
1,273,286	+		GFF1244	0.35	+1.3
1,273,294	-		GFF1244	0.37	+0.1
1,273,294	-		GFF1244	0.37	-1.5
1,273,294	-		GFF1244	0.37	+0.6
1,273,294	-		GFF1244	0.37	-2.7
1,273,306	+		GFF1244	0.40	+1.1
1,273,306	+		GFF1244	0.40	-0.1
1,273,314	-		GFF1244	0.42	+0.4
1,273,334	-		GFF1244	0.47	-1.9
1,273,352	+		GFF1244	0.52	+0.1
1,273,352	+		GFF1244	0.52	-1.3
1,273,353	+		GFF1244	0.52	-0.1
1,273,360	-		GFF1244	0.54	-0.2
1,273,360	-		GFF1244	0.54	-1.9
1,273,360	-		GFF1244	0.54	-0.2
1,273,374	-		GFF1244	0.58	-0.2
1,273,387	+		GFF1244	0.61	-1.0
1,273,394	+		GFF1244	0.63	-0.9
1,273,395	-		GFF1244	0.63	+0.4
1,273,400	-		GFF1244	0.65	-0.1
1,273,407	+		GFF1244	0.67	+1.2
1,273,407	+		GFF1244	0.67	-1.0
1,273,407	+		GFF1244	0.67	+0.6
1,273,415	-		GFF1244	0.69	+0.9
1,273,415	-		GFF1244	0.69	-0.9
1,273,415	-		GFF1244	0.69	-1.2
1,273,447	-		GFF1244	0.77	-1.6
1,273,468	+		GFF1244	0.83	-0.6
1,273,478	+		GFF1244	0.85	+1.4
1,273,486	-		GFF1244	0.88	+0.2
1,273,486	-		GFF1244	0.88	+0.4
1,273,486	-		GFF1244	0.88	+0.2
1,273,486	-		GFF1244	0.88	-1.3
1,273,486	-		GFF1244	0.88	+0.9
1,273,486	-		GFF1244	0.88	-0.9
1,273,496	+				+0.1
1,273,508	+				-1.0
1,273,514	+				+0.4
1,273,523	+				+0.4
1,273,557	-				-2.6
1,273,560	+				+0.7
1,273,574	-				-1.2
1,273,583	-				+1.1
1,273,592	-				-1.6
1,273,610	-				+0.1
1,273,611	-				-1.4
1,273,626	+		GFF1245	0.10	+1.8
1,273,628	+		GFF1245	0.10	-1.2
1,273,628	+		GFF1245	0.10	+0.2
1,273,628	+		GFF1245	0.10	-1.5
1,273,628	+		GFF1245	0.10	-0.6
1,273,636	-		GFF1245	0.11	+0.3
1,273,636	-		GFF1245	0.11	+0.7
1,273,636	-		GFF1245	0.11	+1.6
1,273,636	-		GFF1245	0.11	-2.2
1,273,643	+		GFF1245	0.12	-3.0
1,273,651	-		GFF1245	0.13	-1.0
1,273,651	-		GFF1245	0.13	-0.0
1,273,651	-		GFF1245	0.13	+0.2
1,273,687	+		GFF1245	0.16	+1.1
1,273,697	-		GFF1245	0.17	-1.5
1,273,699	-		GFF1245	0.17	-0.1
1,273,699	-		GFF1245	0.17	-0.2
1,273,702	-		GFF1245	0.18	+0.4
1,273,705	+		GFF1245	0.18	-2.2
1,273,713	-		GFF1245	0.19	+1.5
1,273,713	-		GFF1245	0.19	-0.5
1,273,713	-		GFF1245	0.19	+0.2
1,273,715	+		GFF1245	0.19	-0.9
1,273,723	-		GFF1245	0.20	-1.9
1,273,728	+		GFF1245	0.20	-0.7
1,273,728	+		GFF1245	0.20	-0.7
1,273,728	+		GFF1245	0.20	-1.8
1,273,728	+		GFF1245	0.20	-1.1
1,273,736	-		GFF1245	0.21	-1.2
1,273,738	+		GFF1245	0.21	-1.0
1,273,738	+		GFF1245	0.21	-0.8
1,273,738	-		GFF1245	0.21	-0.6
1,273,761	+		GFF1245	0.24	+0.4
1,273,762	-		GFF1245	0.24	+0.8
1,273,764	-		GFF1245	0.24	+0.3
1,273,764	-		GFF1245	0.24	+1.4
1,273,784	+		GFF1245	0.26	-1.0
1,273,792	-		GFF1245	0.27	-0.2
1,273,792	-		GFF1245	0.27	-0.5
1,273,792	-		GFF1245	0.27	-1.0
1,273,792	-		GFF1245	0.27	+0.9
1,273,800	-		GFF1245	0.28	+0.1
1,273,808	+		GFF1245	0.28	+0.4
1,273,816	-		GFF1245	0.29	+0.9
1,273,828	-		GFF1245	0.30	-0.5
1,273,842	-		GFF1245	0.32	-0.7
1,273,852	+		GFF1245	0.33	-0.8
1,273,866	+		GFF1245	0.34	+1.5
1,273,866	+		GFF1245	0.34	+1.8
1,273,866	+		GFF1245	0.34	-0.4
1,273,866	+		GFF1245	0.34	-0.7
1,273,866	+		GFF1245	0.34	+0.7
1,273,866	+		GFF1245	0.34	-0.2
1,273,866	+		GFF1245	0.34	-0.7
1,273,866	+		GFF1245	0.34	+0.2
1,273,866	+		GFF1245	0.34	+1.6
1,273,867	-		GFF1245	0.34	+0.8
1,273,874	-		GFF1245	0.35	-0.5
1,273,874	-		GFF1245	0.35	-0.4
1,273,874	-		GFF1245	0.35	-0.7
1,273,874	-		GFF1245	0.35	-0.2
1,273,874	-		GFF1245	0.35	+0.5
1,273,874	-		GFF1245	0.35	+1.1
1,273,874	-		GFF1245	0.35	-0.6
1,273,874	-		GFF1245	0.35	-1.6
1,273,874	-		GFF1245	0.35	-1.5
1,273,874	-		GFF1245	0.35	+0.6
1,273,883	+		GFF1245	0.36	+0.2
1,273,883	+		GFF1245	0.36	-2.8
1,273,883	+		GFF1245	0.36	-0.3
1,273,883	+		GFF1245	0.36	+0.6
1,273,883	+		GFF1245	0.36	+0.1
1,273,883	+		GFF1245	0.36	-0.3
1,273,886	-		GFF1245	0.36	+0.7
1,273,889	-		GFF1245	0.37	-1.7
1,273,891	-		GFF1245	0.37	+0.5
1,273,891	-		GFF1245	0.37	+0.8
1,273,891	-		GFF1245	0.37	-0.2
1,273,891	-		GFF1245	0.37	+0.5
1,273,891	-		GFF1245	0.37	+0.4
1,273,891	-		GFF1245	0.37	-0.8
1,273,901	-		GFF1245	0.38	-0.6
1,273,907	-		GFF1245	0.39	+0.2
1,273,914	+		GFF1245	0.39	+0.5
1,273,915	+		GFF1245	0.39	-1.4
1,273,921	+		GFF1245	0.40	-1.9
1,273,923	-		GFF1245	0.40	-0.1
1,273,923	-		GFF1245	0.40	+0.7
1,273,923	-		GFF1245	0.40	-0.2
1,273,923	-		GFF1245	0.40	+0.2
1,273,926	+		GFF1245	0.40	-1.3
1,273,928	-		GFF1245	0.41	-0.2
1,273,934	-		GFF1245	0.41	+0.3
1,273,939	-		GFF1245	0.42	+0.6
1,273,943	+		GFF1245	0.42	-0.4
1,273,961	+		GFF1245	0.44	-0.2
1,273,961	+		GFF1245	0.44	+0.3
1,273,961	+		GFF1245	0.44	-0.7
1,274,016	-		GFF1245	0.50	-0.6
1,274,026	-		GFF1245	0.51	+0.2
1,274,028	+		GFF1245	0.51	-0.0
1,274,036	-		GFF1245	0.52	-1.7
1,274,036	-		GFF1245	0.52	-1.1
1,274,038	-		GFF1245	0.52	-0.2
1,274,043	+		GFF1245	0.52	+0.5
1,274,057	-		GFF1245	0.54	+0.5
1,274,074	-		GFF1245	0.55	-0.3
1,274,097	+		GFF1245	0.58	-1.7
1,274,141	+		GFF1245	0.62	-1.1
1,274,149	-		GFF1245	0.63	-1.2
1,274,154	-		GFF1245	0.64	-1.0
1,274,159	+		GFF1245	0.64	-0.1
1,274,159	+		GFF1245	0.64	-0.1
1,274,167	-		GFF1245	0.65	+0.0
1,274,174	+		GFF1245	0.66	-0.4
1,274,185	+		GFF1245	0.67	-2.3
1,274,185	+		GFF1245	0.67	+0.4
1,274,198	-		GFF1245	0.68	-1.5
1,274,212	+		GFF1245	0.69	-2.0
1,274,212	+		GFF1245	0.69	-0.2
1,274,213	-		GFF1245	0.70	+0.9
1,274,216	-		GFF1245	0.70	+1.4
1,274,220	-		GFF1245	0.70	-0.1
1,274,220	-		GFF1245	0.70	-0.8
1,274,222	+		GFF1245	0.70	+0.3
1,274,223	+		GFF1245	0.71	+1.9
1,274,231	-		GFF1245	0.71	+0.1
1,274,231	-		GFF1245	0.71	-0.9
1,274,231	-		GFF1245	0.71	+0.8
1,274,231	-		GFF1245	0.71	+0.1
1,274,240	+		GFF1245	0.72	-2.3
1,274,240	+		GFF1245	0.72	+1.3
1,274,240	+		GFF1245	0.72	-1.0
1,274,248	-		GFF1245	0.73	-0.4
1,274,248	-		GFF1245	0.73	-0.5
1,274,290	-		GFF1245	0.77	+0.6
1,274,295	+		GFF1245	0.78	-0.7
1,274,298	-		GFF1245	0.78	+0.4
1,274,309	+		GFF1245	0.79	-0.5
1,274,317	-		GFF1245	0.80	-0.7
1,274,317	-		GFF1245	0.80	+0.5
1,274,319	+		GFF1245	0.80	+0.8
1,274,319	+		GFF1245	0.80	+1.6
1,274,327	-		GFF1245	0.81	+1.0
1,274,327	-		GFF1245	0.81	+0.7
1,274,327	-		GFF1245	0.81	+0.1
1,274,327	-		GFF1245	0.81	+0.2
1,274,335	+		GFF1245	0.82	-0.3
1,274,342	+		GFF1245	0.83	+0.6
1,274,342	+		GFF1245	0.83	-1.0
1,274,342	+		GFF1245	0.83	-0.2
1,274,371	+		GFF1245	0.86	+1.1
1,274,409	+		GFF1245	0.89	+0.9
1,274,430	-				+0.8
1,274,447	-				+0.0
1,274,456	+				+0.4
1,274,467	+				+0.6
1,274,469	-				-0.7
1,274,487	+				-0.4
1,274,515	+				+0.1
1,274,516	-				-0.1
1,274,569	+		GFF1246	0.11	-1.1
1,274,569	+		GFF1246	0.11	+0.2
1,274,569	+		GFF1246	0.11	-1.3
1,274,569	+		GFF1246	0.11	+0.4
1,274,569	+		GFF1246	0.11	-1.2
1,274,569	+		GFF1246	0.11	-1.7
1,274,569	+		GFF1246	0.11	-1.7
1,274,571	+		GFF1246	0.12	-0.3
1,274,577	-		GFF1246	0.13	+1.3
1,274,577	-		GFF1246	0.13	+0.5
1,274,577	-		GFF1246	0.13	-2.0
1,274,577	-		GFF1246	0.13	-0.5
1,274,577	-		GFF1246	0.13	-0.2
1,274,577	-		GFF1246	0.13	-1.2
1,274,584	+		GFF1246	0.14	-1.6
1,274,584	+		GFF1246	0.14	+0.9
1,274,584	+		GFF1246	0.14	-0.6
1,274,590	+		GFF1246	0.15	+1.1
1,274,592	-		GFF1246	0.16	-0.0
1,274,592	-		GFF1246	0.16	+0.0
1,274,592	-		GFF1246	0.16	+0.8
1,274,592	-		GFF1246	0.16	-0.6
1,274,592	-		GFF1246	0.16	-1.5
1,274,592	-		GFF1246	0.16	+0.2
1,274,592	-		GFF1246	0.16	+0.8
1,274,592	-		GFF1246	0.16	-0.2
1,274,635	+		GFF1246	0.24	+1.0
1,274,661	+		GFF1246	0.29	-0.2
1,274,661	+		GFF1246	0.29	-1.5
1,274,669	-		GFF1246	0.30	+0.1
1,274,669	-		GFF1246	0.30	+0.5
1,274,669	-		GFF1246	0.30	-0.5
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