Strain Fitness in Sphingobium sp. HT1-2 around GFF1239

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,265,821	+		GFF1237	0.78	+0.5
1,265,829	-		GFF1237	0.80	-2.2
1,265,868	+		GFF1237	0.86	+0.6
1,265,868	+		GFF1237	0.86	+0.6
1,265,874	+		GFF1237	0.88	-0.7
1,265,876	-		GFF1237	0.88	-1.0
1,265,876	-		GFF1237	0.88	+1.1
1,265,876	-		GFF1237	0.88	-1.4
1,265,876	-		GFF1237	0.88	-0.0
1,265,878	+		GFF1237	0.88	-1.2
1,265,886	+		GFF1237	0.90	-0.5
1,265,891	+				-0.4
1,265,894	-				-0.9
1,265,894	-				-0.0
1,265,894	-				-1.2
1,265,899	-				-0.8
1,265,899	-				+0.0
1,265,899	-				-0.2
1,265,899	-				-0.6
1,265,899	-				+0.3
1,265,913	+				-0.4
1,265,916	-				-2.2
1,265,918	+				+0.5
1,265,919	+				+0.8
1,265,921	-				-2.2
1,265,929	+				-1.5
1,265,956	-				+1.3
1,265,958	+				-0.1
1,265,958	+				+0.7
1,265,960	+				-0.8
1,265,966	-				-1.9
1,265,966	-				-1.2
1,265,966	-				-1.4
1,265,985	+				+0.1
1,266,020	+				-0.0
1,266,028	-				-0.4
1,266,028	-				+0.0
1,266,028	-				+0.9
1,266,028	-				-0.6
1,266,028	-				-0.5
1,266,028	-				+0.6
1,266,028	-				-0.3
1,266,030	+				-0.3
1,266,030	+				-0.2
1,266,038	-				+0.4
1,266,038	-				+0.9
1,266,044	+				+0.6
1,266,044	+				-0.6
1,266,047	-				-0.1
1,266,049	+				-1.5
1,266,049	+				-0.0
1,266,049	+				-0.1
1,266,049	+				+0.6
1,266,052	-				+0.3
1,266,057	-				+1.2
1,266,057	-				+0.4
1,266,082	+				-0.0
1,266,082	+				-0.7
1,266,082	+				-1.1
1,266,082	+				-0.3
1,266,082	+				+0.5
1,266,090	-				-1.2
1,266,090	-				+0.0
1,266,090	-				-1.4
1,266,090	-				+0.1
1,266,090	-				-1.6
1,266,103	-				+1.0
1,266,103	-				-1.4
1,266,140	+		GFF1238	0.12	+0.8
1,266,140	+		GFF1238	0.12	-0.9
1,266,140	+		GFF1238	0.12	-2.6
1,266,141	-		GFF1238	0.12	-0.2
1,266,147	+		GFF1238	0.12	-0.1
1,266,207	-		GFF1238	0.20	-1.0
1,266,207	-		GFF1238	0.20	-0.9
1,266,240	-		GFF1238	0.25	-1.2
1,266,240	-		GFF1238	0.25	-0.3
1,266,248	+		GFF1238	0.26	-0.5
1,266,250	-		GFF1238	0.26	+1.3
1,266,250	-		GFF1238	0.26	-0.3
1,266,319	-		GFF1238	0.35	-0.3
1,266,321	-		GFF1238	0.35	+0.0
1,266,353	+		GFF1238	0.40	+0.0
1,266,387	+		GFF1238	0.44	-0.4
1,266,397	+		GFF1238	0.46	+0.8
1,266,405	-		GFF1238	0.47	-1.0
1,266,405	-		GFF1238	0.47	+0.3
1,266,407	+		GFF1238	0.47	+0.3
1,266,407	+		GFF1238	0.47	-1.5
1,266,409	+		GFF1238	0.47	-2.6
1,266,413	-		GFF1238	0.48	-1.1
1,266,415	-		GFF1238	0.48	-0.1
1,266,436	+		GFF1238	0.51	-0.0
1,266,437	-		GFF1238	0.51	-0.4
1,266,444	-		GFF1238	0.52	-0.4
1,266,448	+		GFF1238	0.52	-0.1
1,266,448	+		GFF1238	0.52	+1.2
1,266,456	-		GFF1238	0.53	-1.9
1,266,472	+		GFF1238	0.55	-1.7
1,266,472	+		GFF1238	0.55	+0.7
1,266,472	+		GFF1238	0.55	-1.5
1,266,480	-		GFF1238	0.56	+0.2
1,266,482	+		GFF1238	0.57	-0.1
1,266,492	+		GFF1238	0.58	-1.7
1,266,497	+		GFF1238	0.59	-1.1
1,266,655	-		GFF1238	0.80	+0.4
1,266,662	-		GFF1238	0.81	-1.0
1,266,663	+		GFF1238	0.81	+0.4
1,266,668	-		GFF1238	0.81	+0.4
1,266,680	+		GFF1238	0.83	+1.6
1,266,685	+		GFF1238	0.84	+1.6
1,266,685	+		GFF1238	0.84	-1.2
1,266,686	-		GFF1238	0.84	-1.6
1,266,688	-		GFF1238	0.84	+0.6
1,266,693	-		GFF1238	0.85	-0.4
1,266,693	-		GFF1238	0.85	-0.2
1,266,694	-		GFF1238	0.85	-1.0
1,266,727	-		GFF1238	0.89	-0.3
1,266,732	+		GFF1238	0.90	-1.0
1,266,740	-				-0.2
1,266,758	-				-0.8
1,266,758	-				-0.4
1,266,758	-				-0.4
1,266,768	+				-0.6
1,266,776	-				-1.4
1,266,809	+				+0.2
1,266,809	+				-0.6
1,266,809	+				-1.6
1,266,814	+				+0.6
1,266,829	+				-1.5
1,266,829	+				-1.1
1,266,837	-				+0.0
1,266,837	-				-1.8
1,266,837	-				-0.3
1,266,844	+				-1.0
1,266,855	+				-2.0
1,266,855	+				-2.2
1,266,855	+				+1.1
1,266,855	+				-0.1
1,266,856	+				+0.6
1,266,858	-				-0.2
1,266,858	-				-1.2
1,266,863	-				-0.3
1,266,868	+				-0.8
1,266,868	+				+0.0
1,266,869	-				-0.0
1,266,876	-				-1.4
1,266,880	+				-0.3
1,266,901	-		GFF1239	0.12	-0.8
1,266,912	+		GFF1239	0.14	+0.1
1,266,913	-		GFF1239	0.14	+0.7
1,266,920	-		GFF1239	0.15	+1.4
1,266,927	+		GFF1239	0.16	-1.0
1,266,927	+		GFF1239	0.16	-0.3
1,266,935	-		GFF1239	0.17	+0.0
1,266,935	-		GFF1239	0.17	-0.6
1,266,935	-		GFF1239	0.17	+0.9
1,267,028	+		GFF1239	0.29	+0.8
1,267,028	+		GFF1239	0.29	-0.1
1,267,028	+		GFF1239	0.29	-1.7
1,267,028	+		GFF1239	0.29	-0.3
1,267,028	+		GFF1239	0.29	-1.5
1,267,028	+		GFF1239	0.29	-0.2
1,267,028	+		GFF1239	0.29	+0.2
1,267,028	+		GFF1239	0.29	-1.0
1,267,028	+		GFF1239	0.29	-0.6
1,267,028	+		GFF1239	0.29	-1.3
1,267,028	+		GFF1239	0.29	-0.3
1,267,028	+		GFF1239	0.29	+1.2
1,267,028	+		GFF1239	0.29	-2.3
1,267,028	+		GFF1239	0.29	-1.0
1,267,028	+		GFF1239	0.29	-1.4
1,267,028	+		GFF1239	0.29	+1.3
1,267,028	+		GFF1239	0.29	-0.8
1,267,028	+		GFF1239	0.29	-0.4
1,267,028	+		GFF1239	0.29	-0.4
1,267,028	+		GFF1239	0.29	+0.4
1,267,028	+		GFF1239	0.29	-1.4
1,267,028	+		GFF1239	0.29	-0.0
1,267,028	+		GFF1239	0.29	+0.1
1,267,028	+		GFF1239	0.29	-1.4
1,267,036	-		GFF1239	0.30	+0.1
1,267,036	-		GFF1239	0.30	+0.7
1,267,036	-		GFF1239	0.30	-0.0
1,267,036	-		GFF1239	0.30	-1.2
1,267,036	-		GFF1239	0.30	+1.2
1,267,036	-		GFF1239	0.30	-2.5
1,267,036	-		GFF1239	0.30	-0.1
1,267,036	-		GFF1239	0.30	+1.0
1,267,036	-		GFF1239	0.30	+0.5
1,267,036	-		GFF1239	0.30	-0.4
1,267,036	-		GFF1239	0.30	+0.1
1,267,036	-		GFF1239	0.30	-1.8
1,267,036	-		GFF1239	0.30	-0.4
1,267,036	-		GFF1239	0.30	-1.9
1,267,036	-		GFF1239	0.30	-0.1
1,267,036	-		GFF1239	0.30	-0.2
1,267,036	-		GFF1239	0.30	-0.7
1,267,036	-		GFF1239	0.30	-0.1
1,267,036	-		GFF1239	0.30	-1.8
1,267,036	-		GFF1239	0.30	+0.7
1,267,036	-		GFF1239	0.30	+1.6
1,267,036	-		GFF1239	0.30	+0.3
1,267,036	-		GFF1239	0.30	-0.7
1,267,036	-		GFF1239	0.30	-0.0
1,267,036	-		GFF1239	0.30	+0.2
1,267,038	+		GFF1239	0.30	-0.2
1,267,039	+		GFF1239	0.30	-1.0
1,267,046	-		GFF1239	0.31	-1.1
1,267,046	-		GFF1239	0.31	+0.3
1,267,046	-		GFF1239	0.31	+0.6
1,267,047	-		GFF1239	0.31	+0.2
1,267,047	-		GFF1239	0.31	+0.4
1,267,093	+		GFF1239	0.37	-2.2
1,267,098	+		GFF1239	0.38	-0.9
1,267,098	+		GFF1239	0.38	+0.3
1,267,106	-		GFF1239	0.39	+0.2
1,267,116	-		GFF1239	0.40	+0.3
1,267,119	+		GFF1239	0.41	+0.2
1,267,119	+		GFF1239	0.41	-1.5
1,267,123	+		GFF1239	0.41	-0.0
1,267,127	-		GFF1239	0.42	-1.4
1,267,127	-		GFF1239	0.42	-2.3
1,267,137	+		GFF1239	0.43	+0.2
1,267,141	+		GFF1239	0.43	+0.0
1,267,149	-		GFF1239	0.44	+0.1
1,267,162	-		GFF1239	0.46	-0.3
1,267,269	+		GFF1239	0.60	-0.1
1,267,277	-		GFF1239	0.61	+0.2
1,267,277	-		GFF1239	0.61	+0.4
1,267,277	-		GFF1239	0.61	-1.1
1,267,277	-		GFF1239	0.61	-0.2
1,267,278	-		GFF1239	0.61	-0.4
1,267,305	+		GFF1239	0.65	-0.5
1,267,305	+		GFF1239	0.65	-0.2
1,267,305	+		GFF1239	0.65	-0.6
1,267,305	+		GFF1239	0.65	-2.0
1,267,313	-		GFF1239	0.66	-0.4
1,267,313	-		GFF1239	0.66	-1.1
1,267,313	-		GFF1239	0.66	+0.6
1,267,313	-		GFF1239	0.66	+0.1
1,267,313	-		GFF1239	0.66	+0.0
1,267,313	-		GFF1239	0.66	+0.1
1,267,313	-		GFF1239	0.66	-0.0
1,267,318	+		GFF1239	0.66	+1.1
1,267,339	+		GFF1239	0.69	+0.2
1,267,347	-		GFF1239	0.70	+0.2
1,267,347	-		GFF1239	0.70	-1.5
1,267,352	-		GFF1239	0.71	-0.6
1,267,353	+		GFF1239	0.71	+0.0
1,267,353	+		GFF1239	0.71	-0.3
1,267,353	+		GFF1239	0.71	+0.2
1,267,353	+		GFF1239	0.71	-0.8
1,267,358	+		GFF1239	0.71	-0.0
1,267,358	+		GFF1239	0.71	-0.0
1,267,361	-		GFF1239	0.72	+1.0
1,267,361	-		GFF1239	0.72	-0.5
1,267,361	-		GFF1239	0.72	-1.3
1,267,361	-		GFF1239	0.72	-0.1
1,267,361	-		GFF1239	0.72	-2.0
1,267,361	-		GFF1239	0.72	+1.2
1,267,366	-		GFF1239	0.72	-1.6
1,267,372	-		GFF1239	0.73	-0.3
1,267,378	+		GFF1239	0.74	-1.0
1,267,388	+		GFF1239	0.75	-1.2
1,267,391	-		GFF1239	0.76	-0.2
1,267,391	-		GFF1239	0.76	+0.4
1,267,413	-		GFF1239	0.79	+0.4
1,267,434	+		GFF1239	0.81	+0.2
1,267,444	+		GFF1239	0.83	-0.9
1,267,444	+		GFF1239	0.83	-0.1
1,267,444	+		GFF1239	0.83	+0.5
1,267,447	-		GFF1239	0.83	+0.5
1,267,447	-		GFF1239	0.83	-3.1
1,267,447	-		GFF1239	0.83	-0.6
1,267,452	-		GFF1239	0.84	-1.4
1,267,452	-		GFF1239	0.84	+0.3
1,267,471	+		GFF1239	0.86	-0.4
1,267,487	+		GFF1239	0.88	-1.2
1,267,487	+		GFF1239	0.88	-2.0
1,267,495	+		GFF1239	0.89	-0.7
1,267,495	+		GFF1239	0.89	-0.1
1,267,495	-		GFF1239	0.89	-0.0
1,267,495	-		GFF1239	0.89	+1.8
1,267,498	+		GFF1239	0.90	-0.5
1,267,498	+		GFF1239	0.90	-0.9
1,267,503	-				-1.4
1,267,514	+				+1.1
1,267,514	+				-1.0
1,267,567	+				-1.0
1,267,572	+				+0.5
1,267,579	+				-1.9
1,267,580	-				-0.6
1,267,611	+				-1.4
1,267,642	+				+0.1
1,267,643	-				-1.2
1,267,655	-				-0.4
1,267,659	+				+0.9
1,267,659	+				+0.4
1,267,659	+				-0.8
1,267,659	+				-0.3
1,267,659	+				-0.6
1,267,659	+				-0.6
1,267,659	+				+0.2
1,267,659	+				-0.5
1,267,659	+				-0.3
1,267,667	-				+1.8
1,267,667	-				-0.8
1,267,667	-				+0.9
1,267,667	-				-0.5
1,267,667	-				-0.8
1,267,667	-				-1.0
1,267,667	-				+1.2
1,267,667	-				+1.3
1,267,683	+		GFF1240	0.10	+1.3
1,267,683	+		GFF1240	0.10	+0.2
1,267,688	+		GFF1240	0.11	+0.4
1,267,691	-		GFF1240	0.11	+0.7
1,267,691	-		GFF1240	0.11	+0.9
1,267,696	-		GFF1240	0.12	-1.4
1,267,696	-		GFF1240	0.12	-1.8
1,267,702	+		GFF1240	0.12	+0.3
1,267,715	-		GFF1240	0.14	-0.5
1,267,719	+		GFF1240	0.15	-1.3
1,267,726	-		GFF1240	0.15	-1.7
1,267,726	-		GFF1240	0.15	-0.9
1,267,743	-		GFF1240	0.17	-0.7
1,267,743	-		GFF1240	0.17	-0.3
1,267,784	+		GFF1240	0.22	-0.2
1,267,792	-		GFF1240	0.23	-0.4
1,267,792	-		GFF1240	0.23	+0.9
1,267,792	-		GFF1240	0.23	-1.0
1,267,792	-		GFF1240	0.23	-0.6
1,267,794	+		GFF1240	0.23	-0.5
1,267,814	-		GFF1240	0.26	-2.8
1,267,817	+		GFF1240	0.26	-0.1
1,267,840	+		GFF1240	0.29	-0.3
1,267,848	-		GFF1240	0.30	-0.1
1,267,850	+		GFF1240	0.30	-0.5
1,267,858	-		GFF1240	0.31	+1.3
1,267,865	-		GFF1240	0.32	-0.8
1,267,870	-		GFF1240	0.33	-1.0
1,267,883	-		GFF1240	0.34	+0.6
1,267,883	-		GFF1240	0.34	+0.3
1,267,897	-		GFF1240	0.36	+0.3
1,267,905	-		GFF1240	0.37	+0.3
1,267,920	+		GFF1240	0.38	-0.4
1,267,924	-		GFF1240	0.39	+0.3
1,267,960	+		GFF1240	0.43	-2.0
1,267,965	+		GFF1240	0.44	-1.2
1,267,968	-		GFF1240	0.44	-1.2
1,267,968	-		GFF1240	0.44	-0.6
1,267,973	-		GFF1240	0.45	-0.1
1,267,973	-		GFF1240	0.45	+0.3
1,267,994	-		GFF1240	0.47	-2.2
1,268,016	+		GFF1240	0.50	-0.8
1,268,016	+		GFF1240	0.50	+0.6
1,268,035	-		GFF1240	0.52	-0.4
1,268,035	-		GFF1240	0.52	-1.9
1,268,040	+		GFF1240	0.53	-0.3
1,268,047	-		GFF1240	0.54	-2.2
1,268,048	-		GFF1240	0.54	-1.3
1,268,061	+		GFF1240	0.55	+0.6
1,268,071	-		GFF1240	0.56	+0.5
1,268,076	-		GFF1240	0.57	-2.0
1,268,076	-		GFF1240	0.57	-0.7
1,268,101	-		GFF1240	0.60	-1.0
1,268,178	+		GFF1240	0.69	-1.2
1,268,178	+		GFF1240	0.69	-0.2
1,268,178	+		GFF1240	0.69	-0.9
1,268,186	-		GFF1240	0.70	-1.5
1,268,186	-		GFF1240	0.70	-1.1
1,268,186	-		GFF1240	0.70	-0.2
1,268,186	-		GFF1240	0.70	+0.5
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1,268,357	+				+0.3
1,268,370	+				-0.2
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1,268,378	-				-0.4
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1,268,378	-				-0.4
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1,268,385	-				-1.5
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1,268,428	-				-1.6
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1,268,524	+				-2.2
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