Strain Fitness in Sphingobium sp. HT1-2 around GFF1235

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,263,061	+		GFF1232	0.81	+0.4
1,263,069	-		GFF1232	0.83	-1.0
1,263,082	+		GFF1232	0.87	-0.8
1,263,082	+		GFF1232	0.87	-0.3
1,263,082	+		GFF1232	0.87	-1.4
1,263,083	+		GFF1232	0.88	-0.8
1,263,090	-				-1.0
1,263,091	-				-0.7
1,263,122	+				+0.9
1,263,122	+				-2.4
1,263,122	+				+0.6
1,263,123	+				-0.0
1,263,128	+				+0.5
1,263,130	-				+0.8
1,263,130	-				-0.8
1,263,140	+				+0.2
1,263,140	+				-0.5
1,263,184	+				+0.7
1,263,191	+				-0.4
1,263,216	+				-0.6
1,263,218	-				-2.0
1,263,220	+		GFF1233	0.10	-2.8
1,263,220	+		GFF1233	0.10	-0.4
1,263,223	-		GFF1233	0.11	-1.0
1,263,223	-		GFF1233	0.11	-1.4
1,263,223	-		GFF1233	0.11	+0.6
1,263,225	+		GFF1233	0.11	-0.4
1,263,232	+		GFF1233	0.12	-0.3
1,263,241	-		GFF1233	0.14	+1.7
1,263,241	-		GFF1233	0.14	-0.4
1,263,241	-		GFF1233	0.14	-0.7
1,263,243	+		GFF1233	0.14	-0.3
1,263,245	-		GFF1233	0.14	-2.3
1,263,251	-		GFF1233	0.15	-0.5
1,263,251	-		GFF1233	0.15	-0.1
1,263,269	-		GFF1233	0.18	+0.0
1,263,269	-		GFF1233	0.18	+0.3
1,263,280	+		GFF1233	0.20	+1.5
1,263,280	+		GFF1233	0.20	-1.9
1,263,280	+		GFF1233	0.20	-0.9
1,263,288	-		GFF1233	0.22	-1.6
1,263,300	+		GFF1233	0.24	+0.0
1,263,319	-		GFF1233	0.27	+0.8
1,263,322	-		GFF1233	0.27	-1.6
1,263,329	-		GFF1233	0.29	-0.7
1,263,339	+		GFF1233	0.30	+0.1
1,263,351	-		GFF1233	0.32	-0.1
1,263,352	+		GFF1233	0.32	-0.2
1,263,352	+		GFF1233	0.32	-0.1
1,263,352	+		GFF1233	0.32	-0.0
1,263,352	+		GFF1233	0.32	-1.2
1,263,352	+		GFF1233	0.32	-0.4
1,263,352	+		GFF1233	0.32	-1.4
1,263,352	+		GFF1233	0.32	-0.3
1,263,352	+		GFF1233	0.32	+1.8
1,263,352	+		GFF1233	0.32	-0.5
1,263,360	-		GFF1233	0.34	-0.2
1,263,360	-		GFF1233	0.34	+0.5
1,263,360	-		GFF1233	0.34	+1.0
1,263,360	-		GFF1233	0.34	+0.1
1,263,421	-		GFF1233	0.44	-0.7
1,263,421	-		GFF1233	0.44	-1.2
1,263,431	-		GFF1233	0.46	+0.3
1,263,433	+		GFF1233	0.46	-1.7
1,263,433	-		GFF1233	0.46	-0.2
1,263,441	-		GFF1233	0.48	+0.5
1,263,464	+		GFF1233	0.51	+0.6
1,263,464	+		GFF1233	0.51	+0.8
1,263,464	+		GFF1233	0.51	+0.5
1,263,464	+		GFF1233	0.51	+0.5
1,263,472	-		GFF1233	0.53	+0.2
1,263,472	-		GFF1233	0.53	-0.5
1,263,472	-		GFF1233	0.53	-0.5
1,263,472	-		GFF1233	0.53	-0.2
1,263,472	-		GFF1233	0.53	+1.1
1,263,472	-		GFF1233	0.53	-0.3
1,263,482	-		GFF1233	0.54	-0.8
1,263,492	+		GFF1233	0.56	-0.1
1,263,492	+		GFF1233	0.56	-2.3
1,263,492	+		GFF1233	0.56	-0.4
1,263,495	-		GFF1233	0.57	-0.1
1,263,497	+		GFF1233	0.57	-0.0
1,263,500	-		GFF1233	0.58	+0.9
1,263,501	+		GFF1233	0.58	-0.5
1,263,505	-		GFF1233	0.58	-0.2
1,263,505	-		GFF1233	0.58	-0.2
1,263,505	-		GFF1233	0.58	+1.2
1,263,508	-		GFF1233	0.59	-0.9
1,263,524	+		GFF1233	0.62	+1.1
1,263,524	+		GFF1233	0.62	+0.4
1,263,524	+		GFF1233	0.62	-0.5
1,263,545	+		GFF1233	0.65	+2.0
1,263,555	+		GFF1233	0.67	-0.5
1,263,650	+		GFF1233	0.83	+0.2
1,263,650	+		GFF1233	0.83	-0.2
1,263,650	+		GFF1233	0.83	+1.1
1,263,650	+		GFF1233	0.83	-1.0
1,263,655	+		GFF1233	0.84	-0.5
1,263,658	-		GFF1233	0.84	-0.1
1,263,658	-		GFF1233	0.84	-0.8
1,263,658	-		GFF1233	0.84	+0.6
1,263,668	-		GFF1233	0.86	-3.1
1,263,673	-		GFF1233	0.87	+0.1
1,263,675	+		GFF1233	0.87	-2.2
1,263,693	-				+1.0
1,263,717	+				+0.1
1,263,740	-				+0.3
1,263,741	-				-0.4
1,263,741	-				+0.1
1,263,741	-				+0.6
1,263,741	-				-1.2
1,263,741	-				-1.0
1,263,741	-				+1.2
1,263,741	-				-0.8
1,263,745	-				+0.2
1,263,755	+				-0.4
1,263,763	-				-0.0
1,263,778	+				-0.2
1,263,786	-				-0.7
1,263,786	-				+0.5
1,263,828	+		GFF1234	0.26	-0.1
1,263,837	-		GFF1234	0.30	-1.4
1,263,837	-		GFF1234	0.30	+0.3
1,263,854	+		GFF1234	0.37	+0.7
1,263,854	+		GFF1234	0.37	+0.1
1,263,863	+		GFF1234	0.40	+0.4
1,263,873	+		GFF1234	0.44	-1.0
1,263,910	+		GFF1234	0.59	-0.8
1,263,910	+		GFF1234	0.59	-2.2
1,263,912	+		GFF1234	0.60	-0.6
1,263,946	+		GFF1234	0.73	+1.1
1,263,966	+		GFF1234	0.82	+0.1
1,263,969	-		GFF1234	0.83	-0.0
1,264,000	+				-2.4
1,264,009	-				+0.5
1,264,014	-				+0.1
1,264,019	+				+0.0
1,264,021	+				-0.1
1,264,021	+				-2.2
1,264,021	+				-0.4
1,264,027	-				-0.6
1,264,027	-				+0.5
1,264,037	+				-1.2
1,264,037	+				-1.0
1,264,046	+				+0.8
1,264,051	+				-0.7
1,264,051	+				-1.3
1,264,056	+				-1.5
1,264,063	+				-1.4
1,264,063	+				-0.7
1,264,090	+				-1.2
1,264,090	+				+0.3
1,264,090	+				+1.2
1,264,095	+				-0.1
1,264,095	+				-0.2
1,264,095	+				-1.8
1,264,095	+				-0.3
1,264,095	+				+1.8
1,264,098	-				+0.8
1,264,098	-				-0.3
1,264,098	-				-1.9
1,264,100	+				-0.4
1,264,100	+				-0.1
1,264,103	-				-1.0
1,264,103	-				-0.9
1,264,103	-				+0.9
1,264,103	-				-0.7
1,264,105	+				-0.3
1,264,108	-				-1.0
1,264,108	-				-1.0
1,264,108	-				-1.1
1,264,108	-				-0.2
1,264,134	+				+1.2
1,264,134	+				-0.2
1,264,170	-				+0.2
1,264,186	-		GFF1235	0.11	+0.5
1,264,199	-		GFF1235	0.12	+0.8
1,264,209	+		GFF1235	0.13	+1.3
1,264,214	+		GFF1235	0.14	-0.2
1,264,214	+		GFF1235	0.14	-0.9
1,264,214	+		GFF1235	0.14	-0.3
1,264,214	+		GFF1235	0.14	-1.0
1,264,214	+		GFF1235	0.14	-0.5
1,264,217	-		GFF1235	0.14	-0.5
1,264,217	-		GFF1235	0.14	-1.0
1,264,217	-		GFF1235	0.14	+0.2
1,264,222	-		GFF1235	0.14	-0.3
1,264,222	-		GFF1235	0.14	-1.8
1,264,222	-		GFF1235	0.14	+0.1
1,264,248	+		GFF1235	0.17	+2.1
1,264,290	+		GFF1235	0.20	+0.2
1,264,316	+		GFF1235	0.22	+0.3
1,264,316	+		GFF1235	0.22	-0.1
1,264,316	+		GFF1235	0.22	-0.2
1,264,316	+		GFF1235	0.22	-0.4
1,264,316	+		GFF1235	0.22	+1.5
1,264,316	+		GFF1235	0.22	+0.1
1,264,316	+		GFF1235	0.22	-1.7
1,264,316	+		GFF1235	0.22	-1.0
1,264,316	+		GFF1235	0.22	-0.7
1,264,324	-		GFF1235	0.23	-0.5
1,264,324	-		GFF1235	0.23	+0.0
1,264,324	-		GFF1235	0.23	+0.7
1,264,324	-		GFF1235	0.23	-1.3
1,264,324	-		GFF1235	0.23	-0.4
1,264,343	+		GFF1235	0.25	-1.0
1,264,379	+		GFF1235	0.28	-1.4
1,264,387	-		GFF1235	0.28	-1.0
1,264,387	-		GFF1235	0.28	-2.0
1,264,403	+		GFF1235	0.30	+0.5
1,264,419	+		GFF1235	0.31	-0.4
1,264,437	-		GFF1235	0.33	-0.0
1,264,452	+		GFF1235	0.34	+1.4
1,264,472	+		GFF1235	0.36	+0.5
1,264,479	+		GFF1235	0.36	-0.0
1,264,487	-		GFF1235	0.37	-0.3
1,264,504	-		GFF1235	0.38	-0.4
1,264,509	-		GFF1235	0.39	-0.2
1,264,509	-		GFF1235	0.39	-1.2
1,264,521	+		GFF1235	0.40	-0.5
1,264,521	+		GFF1235	0.40	-0.5
1,264,528	-		GFF1235	0.40	-2.3
1,264,528	-		GFF1235	0.40	+0.7
1,264,571	+		GFF1235	0.44	-0.4
1,264,607	+		GFF1235	0.47	-0.2
1,264,607	+		GFF1235	0.47	-0.5
1,264,607	+		GFF1235	0.47	+0.3
1,264,607	+		GFF1235	0.47	-0.4
1,264,607	+		GFF1235	0.47	-0.3
1,264,615	-		GFF1235	0.48	-1.8
1,264,622	+		GFF1235	0.49	-0.4
1,264,622	+		GFF1235	0.49	+0.7
1,264,622	+		GFF1235	0.49	+0.0
1,264,631	-		GFF1235	0.49	+0.1
1,264,635	+		GFF1235	0.50	-0.0
1,264,636	-		GFF1235	0.50	-1.0
1,264,641	-		GFF1235	0.50	-2.2
1,264,641	-		GFF1235	0.50	+0.6
1,264,670	+		GFF1235	0.53	-0.5
1,264,696	+		GFF1235	0.55	-0.5
1,264,696	+		GFF1235	0.55	-0.1
1,264,696	+		GFF1235	0.55	+0.5
1,264,696	+		GFF1235	0.55	+0.7
1,264,696	+		GFF1235	0.55	-1.2
1,264,699	-		GFF1235	0.55	+1.3
1,264,703	-		GFF1235	0.55	-2.7
1,264,704	-		GFF1235	0.55	-0.6
1,264,704	-		GFF1235	0.55	-0.1
1,264,704	-		GFF1235	0.55	-0.0
1,264,704	-		GFF1235	0.55	+0.3
1,264,704	-		GFF1235	0.55	-0.8
1,264,718	-		GFF1235	0.57	+0.6
1,264,737	-		GFF1235	0.58	-0.5
1,264,745	+		GFF1235	0.59	-0.1
1,264,753	-		GFF1235	0.60	+0.0
1,264,768	+		GFF1235	0.61	-0.0
1,264,768	+		GFF1235	0.61	-0.3
1,264,768	+		GFF1235	0.61	-1.8
1,264,768	+		GFF1235	0.61	-1.6
1,264,769	-		GFF1235	0.61	-1.4
1,264,776	-		GFF1235	0.62	-0.2
1,264,796	-		GFF1235	0.63	-0.9
1,264,859	+		GFF1235	0.69	+0.7
1,264,865	+		GFF1235	0.69	-0.3
1,264,865	+		GFF1235	0.69	+0.6
1,264,867	+		GFF1235	0.69	+0.3
1,264,873	-		GFF1235	0.70	+0.9
1,264,912	-		GFF1235	0.73	-0.9
1,264,922	+		GFF1235	0.74	-0.4
1,264,930	-		GFF1235	0.75	+1.4
1,264,945	+		GFF1235	0.76	-2.0
1,264,981	+		GFF1235	0.79	+0.0
1,264,981	+		GFF1235	0.79	-0.3
1,264,981	+		GFF1235	0.79	+0.6
1,264,981	+		GFF1235	0.79	+0.2
1,264,981	+		GFF1235	0.79	-0.8
1,264,981	+		GFF1235	0.79	+0.3
1,264,981	+		GFF1235	0.79	-0.8
1,264,989	-		GFF1235	0.80	-1.5
1,264,989	-		GFF1235	0.80	-0.7
1,264,991	+		GFF1235	0.80	+0.4
1,264,998	+		GFF1235	0.81	-0.2
1,264,999	-		GFF1235	0.81	-1.2
1,264,999	-		GFF1235	0.81	+0.3
1,264,999	-		GFF1235	0.81	-0.9
1,264,999	-		GFF1235	0.81	-2.2
1,265,000	+		GFF1235	0.81	+0.1
1,265,000	+		GFF1235	0.81	-0.4
1,265,013	-		GFF1235	0.82	-1.8
1,265,013	-		GFF1235	0.82	+1.1
1,265,021	+		GFF1235	0.83	-2.0
1,265,028	+		GFF1235	0.83	+0.8
1,265,028	+		GFF1235	0.83	+0.1
1,265,028	+		GFF1235	0.83	+0.3
1,265,036	-		GFF1235	0.84	-1.9
1,265,036	-		GFF1235	0.84	+1.1
1,265,058	+		GFF1235	0.86	-0.4
1,265,063	+		GFF1235	0.86	-0.1
1,265,063	+		GFF1235	0.86	-1.6
1,265,063	+		GFF1235	0.86	-3.3
1,265,066	-		GFF1235	0.86	-0.6
1,265,067	+		GFF1235	0.86	-0.0
1,265,071	-		GFF1235	0.87	-0.0
1,265,071	-		GFF1235	0.87	+0.5
1,265,071	-		GFF1235	0.87	+1.2
1,265,071	-		GFF1235	0.87	+1.6
1,265,074	-		GFF1235	0.87	-0.0
1,265,098	+		GFF1235	0.89	-0.4
1,265,106	-		GFF1235	0.90	-0.3
1,265,117	-				-0.3
1,265,124	-				-0.7
1,265,147	+				-1.2
1,265,147	+				-0.8
1,265,154	-				+0.3
1,265,168	+				+0.2
1,265,173	+				+1.1
1,265,176	-				-0.3
1,265,186	-				-2.7
1,265,221	+				+0.3
1,265,259	-				-0.3
1,265,263	+				-0.3
1,265,271	-		GFF1236	0.11	-1.9
1,265,271	-		GFF1236	0.11	+1.3
1,265,271	-		GFF1236	0.11	-0.2
1,265,271	-		GFF1236	0.11	-0.4
1,265,280	-		GFF1236	0.17	+0.3
1,265,286	+		GFF1236	0.21	-1.4
1,265,300	+		GFF1236	0.31	+1.1
1,265,313	-		GFF1236	0.40	-2.4
1,265,335	-		GFF1236	0.56	-0.5
1,265,337	+		GFF1236	0.57	+0.2
1,265,348	+		GFF1236	0.65	+1.2
1,265,351	+		GFF1236	0.67	+0.3
1,265,393	-				+0.1
1,265,408	+				-0.2
1,265,408	+				-1.8
1,265,416	-				-1.2
1,265,421	-				+0.5
1,265,431	-				+1.8
1,265,460	-		GFF1237	0.15	-1.9
1,265,476	-		GFF1237	0.18	+0.5
1,265,500	+		GFF1237	0.22	-0.2
1,265,541	+		GFF1237	0.29	+0.0
1,265,560	-		GFF1237	0.32	-0.7
1,265,570	-		GFF1237	0.34	-0.5
1,265,601	-		GFF1237	0.40	+0.6
1,265,603	+		GFF1237	0.40	+0.4
1,265,603	+		GFF1237	0.40	+0.8
1,265,608	+		GFF1237	0.41	-1.5
1,265,608	+		GFF1237	0.41	-0.3
1,265,608	+		GFF1237	0.41	-0.6
1,265,616	-		GFF1237	0.42	-0.4
1,265,616	-		GFF1237	0.42	+0.0
1,265,616	-		GFF1237	0.42	-0.2
1,265,620	+		GFF1237	0.43	+1.4
1,265,662	+		GFF1237	0.50	-0.4
1,265,662	+		GFF1237	0.50	+0.2
1,265,667	+		GFF1237	0.51	-1.7
1,265,686	+		GFF1237	0.55	+0.6
1,265,687	-		GFF1237	0.55	-2.1
1,265,744	-		GFF1237	0.65	+0.6
1,265,744	-		GFF1237	0.65	+0.2
1,265,747	-		GFF1237	0.65	+0.7
1,265,759	+		GFF1237	0.67	-1.6
1,265,764	+		GFF1237	0.68	-0.9
1,265,765	-		GFF1237	0.68	-1.6
1,265,767	-		GFF1237	0.69	-0.1
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