Strain Fitness in Sphingobium sp. HT1-2 around GFF1218

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,240,676	-		GFF1217	0.70	-0.0
1,240,728	-		GFF1217	0.72	+0.3
1,240,739	+		GFF1217	0.72	+0.5
1,240,760	+		GFF1217	0.73	-0.8
1,240,765	+		GFF1217	0.73	-2.0
1,240,842	+		GFF1217	0.75	+0.8
1,240,845	-		GFF1217	0.75	-0.8
1,240,845	-		GFF1217	0.75	+0.3
1,240,865	-		GFF1217	0.76	-1.6
1,240,865	-		GFF1217	0.76	+0.8
1,240,867	+		GFF1217	0.76	-1.5
1,240,875	-		GFF1217	0.76	-1.7
1,240,897	+		GFF1217	0.77	+0.9
1,240,898	-		GFF1217	0.77	+1.2
1,240,898	-		GFF1217	0.77	-0.9
1,240,911	+		GFF1217	0.77	-0.7
1,240,914	-		GFF1217	0.77	-0.6
1,240,927	-		GFF1217	0.78	+0.7
1,240,974	-		GFF1217	0.79	-0.1
1,240,980	+		GFF1217	0.79	+0.8
1,240,980	+		GFF1217	0.79	+1.0
1,240,985	+		GFF1217	0.80	-1.9
1,240,988	-		GFF1217	0.80	-1.7
1,240,988	-		GFF1217	0.80	-1.4
1,240,993	-		GFF1217	0.80	-0.5
1,241,003	+		GFF1217	0.80	+0.3
1,241,006	-		GFF1217	0.80	+1.2
1,241,006	-		GFF1217	0.80	+0.8
1,241,011	-		GFF1217	0.80	+0.5
1,241,011	-		GFF1217	0.80	+0.1
1,241,011	-		GFF1217	0.80	+1.1
1,241,011	-		GFF1217	0.80	+1.7
1,241,013	+		GFF1217	0.80	+0.5
1,241,076	-		GFF1217	0.82	-0.1
1,241,078	+		GFF1217	0.82	-0.3
1,241,086	-		GFF1217	0.83	-1.8
1,241,109	-		GFF1217	0.83	-1.7
1,241,134	+		GFF1217	0.84	-1.7
1,241,134	+		GFF1217	0.84	-0.8
1,241,134	+		GFF1217	0.84	-0.8
1,241,167	+		GFF1217	0.85	-1.0
1,241,171	+		GFF1217	0.85	-0.3
1,241,176	+		GFF1217	0.85	-1.2
1,241,176	+		GFF1217	0.85	+0.5
1,241,176	+		GFF1217	0.85	-1.1
1,241,176	+		GFF1217	0.85	+0.2
1,241,176	+		GFF1217	0.85	-0.2
1,241,176	+		GFF1217	0.85	+1.8
1,241,176	+		GFF1217	0.85	+0.0
1,241,176	+		GFF1217	0.85	-0.3
1,241,176	+		GFF1217	0.85	-0.4
1,241,176	+		GFF1217	0.85	-0.4
1,241,176	+		GFF1217	0.85	-0.4
1,241,179	-		GFF1217	0.85	-0.4
1,241,184	-		GFF1217	0.85	-0.4
1,241,184	-		GFF1217	0.85	-0.4
1,241,184	-		GFF1217	0.85	-0.4
1,241,184	-		GFF1217	0.85	-1.8
1,241,184	-		GFF1217	0.85	-1.1
1,241,184	-		GFF1217	0.85	+0.5
1,241,184	-		GFF1217	0.85	+0.6
1,241,184	-		GFF1217	0.85	-0.8
1,241,184	-		GFF1217	0.85	-0.5
1,241,184	-		GFF1217	0.85	-0.2
1,241,184	-		GFF1217	0.85	-0.4
1,241,249	+		GFF1217	0.87	+1.2
1,241,249	+		GFF1217	0.87	-0.6
1,241,249	+		GFF1217	0.87	-1.2
1,241,257	-		GFF1217	0.88	-1.2
1,241,257	-		GFF1217	0.88	+1.0
1,241,257	-		GFF1217	0.88	+0.4
1,241,272	+		GFF1217	0.88	+0.3
1,241,272	+		GFF1217	0.88	-0.0
1,241,272	+		GFF1217	0.88	-1.5
1,241,272	+		GFF1217	0.88	+0.1
1,241,272	+		GFF1217	0.88	-1.6
1,241,272	+		GFF1217	0.88	+1.7
1,241,280	-		GFF1217	0.88	-0.6
1,241,280	-		GFF1217	0.88	+1.4
1,241,303	-		GFF1217	0.89	+1.0
1,241,307	+		GFF1217	0.89	+1.1
1,241,336	-		GFF1217	0.90	-0.8
1,241,353	+				+0.5
1,241,363	-				-0.1
1,241,370	+				-0.7
1,241,393	+				-0.6
1,241,401	+				-0.2
1,241,401	+				-1.6
1,241,409	-				-2.0
1,241,426	-				-0.8
1,241,431	+				-0.1
1,241,450	-				+1.2
1,241,459	+				+0.8
1,241,459	+				-0.9
1,241,462	-				+0.1
1,241,467	-				-0.6
1,241,467	-				-0.5
1,241,467	-				+0.8
1,241,476	+				-0.2
1,241,476	-				-2.7
1,241,541	+				-0.1
1,241,541	+				-2.4
1,241,549	-				+0.3
1,241,551	+				-2.6
1,241,561	+				+0.5
1,241,573	-				-1.3
1,241,583	+				+1.0
1,241,585	+				-2.2
1,241,593	-				+0.5
1,241,593	-				+0.9
1,241,600	-				-1.2
1,241,602	+				+0.6
1,241,610	-				-0.1
1,241,610	-				+0.6
1,241,619	+				+0.2
1,241,619	+				+0.4
1,241,619	+				-0.0
1,241,619	+				+1.0
1,241,619	+				-0.4
1,241,619	+				+0.0
1,241,619	+				+0.5
1,241,619	+				+0.9
1,241,619	+				+1.1
1,241,619	+				+0.9
1,241,619	+				+0.6
1,241,622	-				+1.6
1,241,624	+				+0.0
1,241,624	+				+0.5
1,241,624	+				-0.8
1,241,627	-				-0.5
1,241,627	-				-1.7
1,241,627	-				-0.9
1,241,627	-				-2.0
1,241,627	-				+0.1
1,241,627	-				-0.5
1,241,627	-				-0.0
1,241,627	-				-0.2
1,241,632	-				+0.8
1,241,632	-				-0.8
1,241,640	+				+0.5
1,241,640	+				+0.1
1,241,656	+				-0.5
1,241,656	+				-1.9
1,241,656	+				-0.6
1,241,662	+				-1.2
1,241,664	+				+1.2
1,241,664	-				-0.6
1,241,664	-				-0.0
1,241,664	-				+0.6
1,241,669	+				+1.1
1,241,670	-				+0.1
1,241,670	-				-0.5
1,241,675	+				-0.8
1,241,677	-				-2.7
1,241,677	-				+0.3
1,241,677	-				-0.7
1,241,677	-				-0.6
1,241,677	-				+0.2
1,241,677	-				-0.7
1,241,683	-				-1.7
1,241,689	+				+1.0
1,241,694	+				-1.6
1,241,697	-				-0.9
1,241,718	+				-0.2
1,241,726	-				-1.4
1,241,726	-				+0.3
1,241,726	-				-0.8
1,241,726	-				-1.0
1,241,743	+				+0.3
1,241,746	-				-1.6
1,241,755	+				+0.7
1,241,760	+				-1.8
1,241,760	+				-0.3
1,241,760	+				-1.9
1,241,760	+				+0.0
1,241,760	+				+0.0
1,241,768	-				+0.8
1,241,768	-				+1.8
1,241,768	-				-1.2
1,241,768	-				+0.6
1,241,768	-				+0.2
1,241,768	-				+0.6
1,241,768	-				-1.5
1,241,768	-				-0.3
1,241,776	+				-1.1
1,241,784	-				-0.2
1,241,786	-				-0.6
1,241,790	+				+0.9
1,241,796	+				-0.8
1,241,804	-				-1.3
1,241,861	-				-0.6
1,241,861	-				+0.2
1,241,868	-				-1.6
1,241,881	+				-1.1
1,241,889	-				-0.2
1,241,897	+				+1.1
1,241,897	+				+1.6
1,241,897	+				-2.2
1,241,897	+				+0.1
1,241,897	+				+0.7
1,241,897	+				+0.1
1,241,897	+				+0.2
1,241,901	+				-1.0
1,241,905	-				-1.3
1,241,905	-				+0.9
1,241,905	-				-0.9
1,241,905	-				-0.1
1,241,905	-				-0.7
1,241,905	-				+0.8
1,241,909	+				-0.0
1,241,914	+				+0.1
1,241,941	-				-0.0
1,241,943	+				-0.5
1,241,947	+				+0.1
1,241,956	-				-0.8
1,241,964	-				+0.5
1,241,994	-				+0.9
1,241,996	+				-1.5
1,241,996	+				-1.2
1,242,047	+				-0.3
1,242,090	+				-0.5
1,242,097	-				+1.6
1,242,147	+		GFF1218	0.11	-1.6
1,242,172	+		GFF1218	0.11	-0.3
1,242,180	-		GFF1218	0.12	-0.1
1,242,186	-		GFF1218	0.12	+0.1
1,242,191	-		GFF1218	0.12	-0.0
1,242,197	+		GFF1218	0.12	-1.8
1,242,202	+		GFF1218	0.12	+0.4
1,242,210	-		GFF1218	0.12	+0.1
1,242,240	+		GFF1218	0.13	+1.3
1,242,267	-		GFF1218	0.14	+0.5
1,242,323	-		GFF1218	0.15	+0.1
1,242,325	+		GFF1218	0.15	+0.0
1,242,325	+		GFF1218	0.15	-0.3
1,242,325	+		GFF1218	0.15	-2.7
1,242,325	+		GFF1218	0.15	-0.1
1,242,326	+		GFF1218	0.15	-0.5
1,242,333	-		GFF1218	0.15	-0.7
1,242,333	-		GFF1218	0.15	-0.1
1,242,333	-		GFF1218	0.15	+0.6
1,242,333	-		GFF1218	0.15	-2.2
1,242,333	-		GFF1218	0.15	+0.3
1,242,358	+		GFF1218	0.16	+0.3
1,242,358	+		GFF1218	0.16	+0.2
1,242,358	+		GFF1218	0.16	-0.1
1,242,358	+		GFF1218	0.16	+0.6
1,242,364	-		GFF1218	0.16	+0.7
1,242,366	-		GFF1218	0.16	+0.6
1,242,371	+		GFF1218	0.16	+0.0
1,242,379	-		GFF1218	0.16	+1.3
1,242,379	-		GFF1218	0.16	+0.2
1,242,381	+		GFF1218	0.16	-0.4
1,242,382	+		GFF1218	0.16	+0.1
1,242,389	-		GFF1218	0.16	-0.9
1,242,389	-		GFF1218	0.16	+0.9
1,242,400	+		GFF1218	0.17	+0.0
1,242,400	+		GFF1218	0.17	+0.0
1,242,400	+		GFF1218	0.17	+0.0
1,242,401	+		GFF1218	0.17	+0.4
1,242,402	-		GFF1218	0.17	-1.2
1,242,408	-		GFF1218	0.17	-0.1
1,242,409	-		GFF1218	0.17	+1.2
1,242,434	+		GFF1218	0.17	+1.0
1,242,434	+		GFF1218	0.17	-0.1
1,242,434	+		GFF1218	0.17	+1.4
1,242,434	+		GFF1218	0.17	-1.8
1,242,436	+		GFF1218	0.17	+0.2
1,242,442	-		GFF1218	0.18	-0.9
1,242,442	-		GFF1218	0.18	-2.2
1,242,442	-		GFF1218	0.18	+0.7
1,242,442	-		GFF1218	0.18	-0.3
1,242,442	-		GFF1218	0.18	-2.1
1,242,442	-		GFF1218	0.18	-1.0
1,242,444	+		GFF1218	0.18	-1.6
1,242,444	+		GFF1218	0.18	-0.1
1,242,444	+		GFF1218	0.18	-1.0
1,242,444	+		GFF1218	0.18	-0.2
1,242,444	-		GFF1218	0.18	-1.0
1,242,447	-		GFF1218	0.18	-0.8
1,242,452	-		GFF1218	0.18	+0.6
1,242,452	-		GFF1218	0.18	+0.1
1,242,460	+		GFF1218	0.18	-1.2
1,242,463	-		GFF1218	0.18	-2.0
1,242,465	+		GFF1218	0.18	-0.7
1,242,467	-		GFF1218	0.18	-0.6
1,242,468	-		GFF1218	0.18	+0.0
1,242,473	-		GFF1218	0.18	+1.4
1,242,478	+		GFF1218	0.18	-1.2
1,242,486	-		GFF1218	0.19	-1.0
1,242,486	-		GFF1218	0.19	-0.8
1,242,486	-		GFF1218	0.19	-0.7
1,242,491	-		GFF1218	0.19	-0.5
1,242,493	+		GFF1218	0.19	-2.4
1,242,493	+		GFF1218	0.19	-0.6
1,242,493	+		GFF1218	0.19	-0.1
1,242,501	-		GFF1218	0.19	-0.6
1,242,501	-		GFF1218	0.19	-0.1
1,242,501	-		GFF1218	0.19	-1.2
1,242,503	+		GFF1218	0.19	-0.1
1,242,503	+		GFF1218	0.19	-0.7
1,242,503	+		GFF1218	0.19	+0.7
1,242,503	+		GFF1218	0.19	+0.0
1,242,511	-		GFF1218	0.19	-0.2
1,242,521	-		GFF1218	0.19	+0.0
1,242,549	+		GFF1218	0.20	-1.0
1,242,570	+		GFF1218	0.21	+1.1
1,242,598	-		GFF1218	0.21	-0.9
1,242,649	-		GFF1218	0.22	+0.6
1,242,668	+		GFF1218	0.23	+0.9
1,242,693	+		GFF1218	0.23	+0.9
1,242,693	+		GFF1218	0.23	-0.0
1,242,693	+		GFF1218	0.23	-0.2
1,242,693	+		GFF1218	0.23	-1.2
1,242,693	+		GFF1218	0.23	-0.9
1,242,701	-		GFF1218	0.24	+0.4
1,242,701	-		GFF1218	0.24	-0.0
1,242,735	-		GFF1218	0.24	+0.2
1,242,797	+		GFF1218	0.26	+0.2
1,242,807	+		GFF1218	0.26	-2.2
1,242,807	+		GFF1218	0.26	-1.0
1,242,815	-		GFF1218	0.26	+0.4
1,242,815	-		GFF1218	0.26	-1.0
1,242,818	+		GFF1218	0.26	-1.2
1,242,818	+		GFF1218	0.26	-0.9
1,242,826	-		GFF1218	0.26	-0.5
1,242,826	-		GFF1218	0.26	-0.7
1,242,852	+		GFF1218	0.27	+0.0
1,242,853	+		GFF1218	0.27	+0.2
1,242,854	+		GFF1218	0.27	-1.9
1,242,854	+		GFF1218	0.27	-1.3
1,242,854	+		GFF1218	0.27	-0.2
1,242,860	-		GFF1218	0.27	-0.1
1,242,862	+		GFF1218	0.27	-0.5
1,242,862	-		GFF1218	0.27	-0.9
1,242,862	-		GFF1218	0.27	+0.5
1,242,862	-		GFF1218	0.27	+0.6
1,242,875	-		GFF1218	0.28	-0.8
1,242,900	-		GFF1218	0.28	+0.6
1,242,905	-		GFF1218	0.28	-0.5
1,242,927	+		GFF1218	0.29	+0.5
1,242,927	+		GFF1218	0.29	-1.2
1,242,927	+		GFF1218	0.29	-0.4
1,242,927	+		GFF1218	0.29	+0.3
1,242,935	-		GFF1218	0.29	+0.7
1,242,935	-		GFF1218	0.29	+0.5
1,242,935	-		GFF1218	0.29	-2.7
1,242,947	-		GFF1218	0.29	-1.0
1,242,954	-		GFF1218	0.29	-1.1
1,242,955	+		GFF1218	0.29	+0.6
1,242,985	+		GFF1218	0.30	-1.7
1,242,985	+		GFF1218	0.30	-1.4
1,242,991	-		GFF1218	0.30	+1.6
1,242,991	-		GFF1218	0.30	-1.9
1,242,993	-		GFF1218	0.30	-0.4
1,242,993	-		GFF1218	0.30	-1.4
1,242,993	-		GFF1218	0.30	+0.6
1,242,993	-		GFF1218	0.30	-1.9
1,242,993	-		GFF1218	0.30	-0.4
1,242,993	-		GFF1218	0.30	+1.3
1,243,026	+		GFF1218	0.31	+0.1
1,243,034	-		GFF1218	0.31	-0.6
1,243,048	+		GFF1218	0.31	+1.1
1,243,090	+		GFF1218	0.32	-0.6
1,243,094	-		GFF1218	0.33	-1.5
1,243,098	+		GFF1218	0.33	-2.4
1,243,098	+		GFF1218	0.33	-0.0
1,243,098	-		GFF1218	0.33	-0.2
1,243,098	-		GFF1218	0.33	-0.2
1,243,115	+		GFF1218	0.33	-2.5
1,243,115	+		GFF1218	0.33	-0.1
1,243,125	+		GFF1218	0.33	+0.4
1,243,133	-		GFF1218	0.33	+0.7
1,243,133	-		GFF1218	0.33	+0.6
1,243,133	-		GFF1218	0.33	+1.7
1,243,147	+		GFF1218	0.34	+1.2
1,243,155	-		GFF1218	0.34	-1.2
1,243,182	+		GFF1218	0.35	+0.3
1,243,182	+		GFF1218	0.35	-0.6
1,243,189	+		GFF1218	0.35	+1.1
1,243,189	+		GFF1218	0.35	-0.3
1,243,200	+		GFF1218	0.35	-2.3
1,243,208	-		GFF1218	0.35	+0.5
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1,243,208	-		GFF1218	0.35	-0.9
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1,243,365	-		GFF1218	0.39	-1.7
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1,243,365	-		GFF1218	0.39	-0.3
1,243,370	+		GFF1218	0.39	-0.9
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1,243,383	+		GFF1218	0.39	+0.2
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1,243,389	-		GFF1218	0.39	-0.3
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1,243,413	-		GFF1218	0.40	-0.8
1,243,422	+		GFF1218	0.40	-1.8
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1,243,478	+		GFF1218	0.41	-0.8
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1,243,516	-		GFF1218	0.42	-0.9
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1,243,546	-		GFF1218	0.43	-2.4
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1,243,603	-		GFF1218	0.44	-0.7
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1,243,657	-		GFF1218	0.45	-0.5
1,243,665	+		GFF1218	0.46	-1.1
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1,243,735	-		GFF1218	0.47	+1.3
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1,243,782	+		GFF1218	0.48	-1.0
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1,243,857	-		GFF1218	0.50	+0.8
1,243,862	+		GFF1218	0.50	-0.9
1,243,872	+		GFF1218	0.50	-0.1
1,243,897	+		GFF1218	0.51	-0.6
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1,244,012	-		GFF1218	0.53	+0.3
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1,245,207	-		GFF1218	0.81	-1.2
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1,245,227	-		GFF1218	0.81	-0.4
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1,245,379	+		GFF1218	0.85	-2.0
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1,245,387	-		GFF1218	0.85	+0.8
1,245,387	-		GFF1218	0.85	-0.4
1,245,387	-		GFF1218	0.85	+1.0
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1,245,440	+		GFF1218	0.86	-2.9
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1,245,577	-		GFF1218	0.89	+0.5
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1,245,580	-		GFF1218	0.89	-1.2
1,245,585	-		GFF1218	0.89	+0.8
1,245,585	-		GFF1218	0.89	-0.2
1,245,585	-		GFF1218	0.89	+0.9
1,245,612	-				-1.0
1,245,612	-				-1.5
1,245,624	-				+0.2
1,245,634	+				-0.0
1,245,648	+				-0.8
1,245,653	+				-0.9
1,245,656	-				+0.3
1,245,656	-				+0.4
1,245,658	+				-0.1
1,245,661	-				-0.8
1,245,671	+				-0.5
1,245,671	+				+0.9
1,245,674	-				-2.7
1,245,691	-				+0.2
1,245,691	-				-2.6
1,245,708	-				-0.6
1,245,727	+				+0.1
1,245,732	+				-0.2
1,245,735	-				+0.3
1,245,735	-				-1.0
1,245,739	+				+0.2
1,245,746	-				-2.0
1,245,748	+				+0.2
1,245,748	+				-1.2
1,245,748	+				-0.6
1,245,748	+				+0.4
1,245,749	+				-0.0
1,245,749	+				+0.5
1,245,756	-				+0.3
1,245,756	-				-0.5
1,245,756	-				+0.4
1,245,756	-				+1.1
1,245,756	-				+0.2
1,245,756	-				-2.4
1,245,757	-				+0.5
1,245,757	-				-1.4
1,245,771	+				-1.5
1,245,771	+				+0.2
1,245,771	+				-2.0
1,245,800	+				+0.8
1,245,800	+				-1.4
1,245,816	+				+0.1
1,245,816	-				+1.0
1,245,824	-				+0.1
1,245,824	-				+0.4
1,245,893	-				-0.5
1,245,901	-				+0.8
1,245,904	+				+1.3
1,245,912	-				-0.8
1,245,915	-				+1.6
1,245,943	+				-0.1
1,245,951	-				+0.2
1,245,951	-				+1.8
1,245,974	+				-0.4
1,245,977	+				+0.5
1,245,982	-				+0.1
1,245,988	+				-0.5
1,246,000	+				-2.0
1,246,006	+				-1.9
1,246,026	+				-0.5
1,246,029	-				+0.8
1,246,042	-				-1.0
1,246,049	+				+0.1
1,246,066	+				-0.2
1,246,074	-				+0.9
1,246,076	+				-1.7
1,246,076	+				-1.0
1,246,084	-				+0.2
1,246,096	+				-0.3
1,246,096	+				-0.5
1,246,100	+				-0.8
1,246,100	+				-1.6
1,246,100	+				-2.4
1,246,100	+				-0.5
1,246,100	+				-1.5
1,246,100	+				-0.3
1,246,100	+				+0.6
1,246,100	+				+0.2
1,246,100	+				-2.2
1,246,105	+				+0.8
1,246,108	-				+1.0
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1,246,108	-				-1.0
1,246,108	-				-0.2
1,246,108	-				-0.8
1,246,108	-				+1.2
1,246,108	-				-2.3
1,246,108	-				-0.8
1,246,108	-				-0.3
1,246,108	-				+0.8
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1,246,132	-		GFF1219	0.12	-0.4
1,246,132	-		GFF1219	0.12	-1.9
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1,246,132	-		GFF1219	0.12	+0.0
1,246,132	-		GFF1219	0.12	-0.7
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1,246,137	-		GFF1219	0.13	-1.8
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