Strain Fitness in Sphingobium sp. HT1-2 around GFF1187

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,193,761	+		GFF1186	0.20	-0.9
1,193,803	+		GFF1186	0.24	-1.1
1,193,807	+		GFF1186	0.24	-0.7
1,193,815	-		GFF1186	0.25	+0.6
1,193,815	-		GFF1186	0.25	+1.4
1,193,822	+		GFF1186	0.25	-0.6
1,193,823	+		GFF1186	0.25	-0.8
1,193,826	-		GFF1186	0.25	-0.8
1,193,831	-		GFF1186	0.26	+1.2
1,193,831	-		GFF1186	0.26	+0.6
1,193,858	+		GFF1186	0.28	-1.9
1,193,881	+		GFF1186	0.30	-0.4
1,193,881	+		GFF1186	0.30	-1.6
1,193,902	+		GFF1186	0.32	-0.2
1,193,910	-		GFF1186	0.32	-2.1
1,193,921	+		GFF1186	0.33	-1.4
1,193,921	+		GFF1186	0.33	-0.4
1,193,921	+		GFF1186	0.33	+0.2
1,193,921	+		GFF1186	0.33	+0.2
1,193,921	+		GFF1186	0.33	+0.1
1,193,921	+		GFF1186	0.33	-2.0
1,193,929	-		GFF1186	0.34	-1.5
1,193,929	-		GFF1186	0.34	-0.3
1,193,929	-		GFF1186	0.34	-1.1
1,193,929	-		GFF1186	0.34	+0.6
1,193,929	-		GFF1186	0.34	-0.3
1,193,939	+		GFF1186	0.35	-0.9
1,193,944	+		GFF1186	0.35	-0.3
1,193,944	+		GFF1186	0.35	-2.3
1,193,966	-		GFF1186	0.37	+1.2
1,193,971	-		GFF1186	0.37	-0.1
1,194,046	+		GFF1186	0.44	-0.5
1,194,055	-		GFF1186	0.44	-2.0
1,194,059	+		GFF1186	0.45	+1.4
1,194,059	+		GFF1186	0.45	+0.0
1,194,059	+		GFF1186	0.45	-1.6
1,194,059	+		GFF1186	0.45	-1.3
1,194,059	+		GFF1186	0.45	-1.2
1,194,059	+		GFF1186	0.45	+0.4
1,194,064	+		GFF1186	0.45	+0.5
1,194,067	-		GFF1186	0.45	+1.6
1,194,067	-		GFF1186	0.45	-2.6
1,194,067	-		GFF1186	0.45	-2.8
1,194,069	+		GFF1186	0.45	-1.0
1,194,069	+		GFF1186	0.45	-0.4
1,194,069	+		GFF1186	0.45	-0.8
1,194,072	-		GFF1186	0.46	-1.2
1,194,077	-		GFF1186	0.46	+0.3
1,194,077	-		GFF1186	0.46	+0.4
1,194,079	-		GFF1186	0.46	+0.4
1,194,081	+		GFF1186	0.46	-0.6
1,194,081	+		GFF1186	0.46	+0.1
1,194,081	+		GFF1186	0.46	+0.6
1,194,123	+		GFF1186	0.50	-0.1
1,194,133	+		GFF1186	0.51	-1.8
1,194,133	+		GFF1186	0.51	-1.2
1,194,133	+		GFF1186	0.51	-0.6
1,194,133	+		GFF1186	0.51	+0.5
1,194,133	+		GFF1186	0.51	+0.1
1,194,148	+		GFF1186	0.52	-1.6
1,194,165	+		GFF1186	0.53	-0.8
1,194,165	+		GFF1186	0.53	-0.9
1,194,165	+		GFF1186	0.53	+1.0
1,194,165	+		GFF1186	0.53	+0.5
1,194,165	+		GFF1186	0.53	+0.1
1,194,173	-		GFF1186	0.54	+1.3
1,194,173	-		GFF1186	0.54	+0.5
1,194,173	-		GFF1186	0.54	-1.5
1,194,223	-		GFF1186	0.58	-1.5
1,194,246	+		GFF1186	0.60	+0.6
1,194,246	+		GFF1186	0.60	+0.0
1,194,254	+		GFF1186	0.61	-1.5
1,194,267	+		GFF1186	0.62	+0.2
1,194,292	-		GFF1186	0.64	-0.0
1,194,311	-		GFF1186	0.65	-1.6
1,194,334	-		GFF1186	0.67	+1.4
1,194,334	-		GFF1186	0.67	-2.2
1,194,334	-		GFF1186	0.67	-0.2
1,194,343	+		GFF1186	0.68	-2.0
1,194,353	+		GFF1186	0.69	-1.7
1,194,398	-		GFF1186	0.73	-1.1
1,194,449	+		GFF1186	0.77	-0.0
1,194,452	-		GFF1186	0.77	+0.3
1,194,458	+		GFF1186	0.77	-2.1
1,194,461	+		GFF1186	0.78	+0.7
1,194,475	+		GFF1186	0.79	-1.2
1,194,476	+		GFF1186	0.79	+0.0
1,194,481	+		GFF1186	0.79	+0.0
1,194,500	+		GFF1186	0.81	-1.9
1,194,509	+		GFF1186	0.82	-0.2
1,194,521	+		GFF1186	0.83	-0.5
1,194,523	-		GFF1186	0.83	-0.8
1,194,529	-		GFF1186	0.83	+0.7
1,194,529	-		GFF1186	0.83	-1.0
1,194,535	+		GFF1186	0.84	+1.0
1,194,564	+		GFF1186	0.86	+0.4
1,194,565	+		GFF1186	0.86	+0.4
1,194,565	+		GFF1186	0.86	-0.1
1,194,565	+		GFF1186	0.86	-0.7
1,194,565	+		GFF1186	0.86	+0.5
1,194,573	-		GFF1186	0.87	+0.1
1,194,573	-		GFF1186	0.87	+0.0
1,194,573	-		GFF1186	0.87	-1.6
1,194,602	-		GFF1186	0.89	-0.3
1,194,604	+		GFF1186	0.89	+0.2
1,194,607	-		GFF1186	0.90	-0.1
1,194,612	-				+0.2
1,194,635	-				+0.6
1,194,639	+				+0.8
1,194,686	-				-0.0
1,194,709	-				+0.0
1,194,716	-				-1.0
1,194,720	-				-0.5
1,194,729	+				+1.3
1,194,729	+				+0.1
1,194,729	+				+0.3
1,194,737	-				+0.6
1,194,737	-				+0.5
1,194,761	+				+0.1
1,194,764	-				-0.2
1,194,788	+		GFF1187	0.10	-0.8
1,194,799	+		GFF1187	0.12	+0.3
1,194,815	-		GFF1187	0.15	-0.5
1,194,823	+		GFF1187	0.16	+0.3
1,194,823	+		GFF1187	0.16	+0.9
1,194,828	-		GFF1187	0.17	-0.0
1,194,831	-		GFF1187	0.18	+0.5
1,194,836	-		GFF1187	0.19	+0.0
1,194,845	-		GFF1187	0.20	+0.2
1,194,846	-		GFF1187	0.20	+0.5
1,194,847	+		GFF1187	0.20	-1.2
1,194,856	+		GFF1187	0.22	+0.9
1,194,889	-		GFF1187	0.28	-1.9
1,194,889	-		GFF1187	0.28	+0.2
1,194,889	-		GFF1187	0.28	-1.6
1,194,889	-		GFF1187	0.28	-0.6
1,194,889	-		GFF1187	0.28	+0.1
1,194,889	-		GFF1187	0.28	-0.3
1,194,920	+		GFF1187	0.33	+0.4
1,194,925	+		GFF1187	0.34	-1.7
1,194,933	-		GFF1187	0.35	-0.3
1,194,948	+		GFF1187	0.38	-1.0
1,194,956	+		GFF1187	0.39	+0.9
1,194,956	-		GFF1187	0.39	-0.5
1,194,981	+		GFF1187	0.43	+0.8
1,195,006	-		GFF1187	0.48	-1.2
1,195,007	+		GFF1187	0.48	-0.4
1,195,014	+		GFF1187	0.49	-1.0
1,195,027	-		GFF1187	0.51	+1.2
1,195,067	-		GFF1187	0.58	+0.5
1,195,067	-		GFF1187	0.58	-0.6
1,195,121	+		GFF1187	0.68	-0.8
1,195,121	-		GFF1187	0.68	-0.2
1,195,131	-		GFF1187	0.69	+0.3
1,195,143	+		GFF1187	0.71	-1.4
1,195,146	-		GFF1187	0.72	-0.8
1,195,148	+		GFF1187	0.72	-0.4
1,195,148	+		GFF1187	0.72	+0.3
1,195,148	+		GFF1187	0.72	+0.5
1,195,148	+		GFF1187	0.72	-1.0
1,195,156	-		GFF1187	0.74	-1.2
1,195,156	-		GFF1187	0.74	+1.0
1,195,156	-		GFF1187	0.74	-0.2
1,195,156	-		GFF1187	0.74	-0.4
1,195,157	+		GFF1187	0.74	-1.0
1,195,162	+		GFF1187	0.75	+1.7
1,195,211	+		GFF1187	0.83	+0.9
1,195,219	-		GFF1187	0.84	-2.6
1,195,246	+		GFF1187	0.89	-0.7
1,195,250	-		GFF1187	0.90	-2.3
1,195,255	-				-0.0
1,195,294	-				-0.4
1,195,296	-				-1.1
1,195,316	+				-1.6
1,195,324	-				+0.6
1,195,324	-				-0.4
1,195,324	-				+0.7
1,195,329	-				-2.3
1,195,335	-				+0.7
1,195,348	-				-0.1
1,195,353	+				-1.0
1,195,353	+				+0.8
1,195,380	-				-0.3
1,195,385	-				-0.2
1,195,385	-				-1.5
1,195,385	-				+0.2
1,195,419	+				+0.6
1,195,425	+				-0.8
1,195,440	+				-2.0
1,195,447	+				+1.5
1,195,455	+				+1.6
1,195,462	+				-0.7
1,195,462	-				-0.3
1,195,463	+				-0.5
1,195,463	-				+0.3
1,195,490	+				-0.4
1,195,490	+				+0.5
1,195,498	-				-0.8
1,195,500	+				-0.6
1,195,500	+				+0.4
1,195,505	+				-1.4
1,195,513	-				-0.0
1,195,523	-				+0.0
1,195,576	+				+1.9
1,195,584	-				-0.3
1,195,594	-				-1.0
1,195,664	-				-1.1
1,195,667	+				+0.6
1,195,672	+				-0.4
1,195,686	-		GFF1188	0.10	+0.4
1,195,778	+		GFF1188	0.13	+0.6
1,195,778	+		GFF1188	0.13	-2.1
1,195,781	-		GFF1188	0.13	-0.5
1,195,788	+		GFF1188	0.14	-1.8
1,195,851	+		GFF1188	0.16	+1.2
1,195,860	+		GFF1188	0.16	+0.5
1,195,870	-		GFF1188	0.16	-1.5
1,195,880	-		GFF1188	0.17	-0.3
1,195,905	+		GFF1188	0.18	+0.5
1,195,908	-		GFF1188	0.18	-0.5
1,195,916	+		GFF1188	0.18	-1.9
1,195,916	+		GFF1188	0.18	-0.8
1,195,916	+		GFF1188	0.18	-0.4
1,195,916	+		GFF1188	0.18	+0.1
1,195,916	+		GFF1188	0.18	-0.1
1,195,924	-		GFF1188	0.18	+0.1
1,195,924	-		GFF1188	0.18	-0.4
1,195,924	-		GFF1188	0.18	-0.1
1,195,924	-		GFF1188	0.18	+1.4
1,195,933	+		GFF1188	0.19	-1.9
1,195,969	+		GFF1188	0.20	+0.3
1,195,969	+		GFF1188	0.20	+0.2
1,195,975	-		GFF1188	0.20	+1.0
1,195,981	+		GFF1188	0.20	+0.8
1,195,982	-		GFF1188	0.20	+0.5
1,195,987	-		GFF1188	0.20	+1.0
1,195,987	-		GFF1188	0.20	-0.2
1,195,997	-		GFF1188	0.21	-2.2
1,196,028	+		GFF1188	0.22	+1.1
1,196,038	+		GFF1188	0.22	-0.0
1,196,041	+		GFF1188	0.22	-0.1
1,196,049	-		GFF1188	0.23	-0.2
1,196,076	+		GFF1188	0.23	+1.3
1,196,076	+		GFF1188	0.23	-0.4
1,196,076	+		GFF1188	0.23	-0.4
1,196,084	-		GFF1188	0.24	-0.6
1,196,084	-		GFF1188	0.24	-2.0
1,196,084	-		GFF1188	0.24	+0.2
1,196,084	-		GFF1188	0.24	-0.7
1,196,084	-		GFF1188	0.24	+0.5
1,196,095	+		GFF1188	0.24	-2.2
1,196,095	+		GFF1188	0.24	+0.4
1,196,103	-		GFF1188	0.24	-0.7
1,196,104	-		GFF1188	0.24	-2.0
1,196,107	+		GFF1188	0.24	-0.4
1,196,107	+		GFF1188	0.24	+0.1
1,196,116	-		GFF1188	0.25	-0.6
1,196,128	-		GFF1188	0.25	+1.0
1,196,151	-		GFF1188	0.26	-0.2
1,196,156	+		GFF1188	0.26	-1.0
1,196,156	+		GFF1188	0.26	+0.1
1,196,164	-		GFF1188	0.26	-1.2
1,196,164	-		GFF1188	0.26	-0.2
1,196,164	-		GFF1188	0.26	+0.8
1,196,169	-		GFF1188	0.27	+0.6
1,196,216	+		GFF1188	0.28	-1.2
1,196,219	+		GFF1188	0.28	-1.1
1,196,232	+		GFF1188	0.29	-1.6
1,196,266	+		GFF1188	0.30	+0.4
1,196,266	+		GFF1188	0.30	-0.2
1,196,268	+		GFF1188	0.30	+0.7