Strain Fitness in Sphingobium sp. HT1-2 around GFF1172

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,175,806	+				-0.4
1,175,814	-				-1.1
1,175,816	+				-0.9
1,175,816	+				+0.9
1,175,816	+				+0.4
1,175,816	+				-0.4
1,175,824	-				+0.1
1,175,842	-				+0.5
1,175,853	+				-0.4
1,175,857	+				+1.1
1,175,857	+				+0.6
1,175,860	+				-1.8
1,175,862	+				+0.1
1,175,883	-				-0.9
1,175,910	-				-2.6
1,175,910	-				+0.4
1,175,912	+				-0.8
1,175,912	+				-0.6
1,175,922	+				+0.9
1,175,930	-				+0.9
1,175,931	+				+0.3
1,175,942	+				-1.9
1,175,950	-				-0.0
1,175,961	+				-0.8
1,175,969	-				-1.1
1,175,976	+				-0.6
1,175,984	-				-0.4
1,175,984	-				+0.7
1,175,984	-				-0.6
1,175,984	-				+0.3
1,176,008	-				-0.3
1,176,031	-				-0.4
1,176,050	+		GFF1170	0.13	+0.3
1,176,050	+		GFF1170	0.13	-0.4
1,176,050	+		GFF1170	0.13	-0.5
1,176,050	+		GFF1170	0.13	-0.5
1,176,051	-		GFF1170	0.14	+0.4
1,176,056	+		GFF1170	0.15	-0.2
1,176,058	-		GFF1170	0.16	+0.2
1,176,058	-		GFF1170	0.16	-0.4
1,176,058	-		GFF1170	0.16	-0.2
1,176,058	-		GFF1170	0.16	+0.8
1,176,066	-		GFF1170	0.18	-0.8
1,176,070	+		GFF1170	0.19	-0.4
1,176,091	+		GFF1170	0.26	+0.2
1,176,099	-		GFF1170	0.28	+1.0
1,176,100	-		GFF1170	0.28	-1.8
1,176,107	-		GFF1170	0.31	-0.1
1,176,117	-		GFF1170	0.34	-0.3
1,176,130	+		GFF1170	0.38	+0.2
1,176,138	-		GFF1170	0.40	-0.1
1,176,148	+		GFF1170	0.43	+0.3
1,176,153	+		GFF1170	0.45	-0.1
1,176,155	+		GFF1170	0.45	-1.0
1,176,161	-		GFF1170	0.47	+0.7
1,176,161	-		GFF1170	0.47	-0.9
1,176,161	-		GFF1170	0.47	+0.2
1,176,163	+		GFF1170	0.48	-2.0
1,176,171	-		GFF1170	0.50	-0.5
1,176,173	+		GFF1170	0.51	+0.7
1,176,174	+		GFF1170	0.51	-1.2
1,176,182	-		GFF1170	0.53	-0.9
1,176,188	+		GFF1170	0.55	+0.3
1,176,196	+		GFF1170	0.58	+1.2
1,176,196	+		GFF1170	0.58	+0.6
1,176,196	+		GFF1170	0.58	-1.9
1,176,196	+		GFF1170	0.58	+0.6
1,176,196	+		GFF1170	0.58	+0.8
1,176,196	+		GFF1170	0.58	+0.6
1,176,204	-		GFF1170	0.60	-0.6
1,176,204	-		GFF1170	0.60	-0.9
1,176,204	-		GFF1170	0.60	+0.6
1,176,204	-		GFF1170	0.60	-1.5
1,176,204	-		GFF1170	0.60	-0.1
1,176,239	+		GFF1170	0.71	-0.5
1,176,259	+		GFF1170	0.77	+1.0
1,176,308	-				-0.1
1,176,342	-				-2.4
1,176,375	-				+0.2
1,176,377	+				-1.1
1,176,385	-		GFF1171	0.11	+0.1
1,176,415	+		GFF1171	0.18	-1.5
1,176,415	+		GFF1171	0.18	-0.9
1,176,415	+		GFF1171	0.18	-1.4
1,176,415	+		GFF1171	0.18	-2.4
1,176,415	+		GFF1171	0.18	+1.5
1,176,423	-		GFF1171	0.19	+0.5
1,176,434	-		GFF1171	0.22	+0.6
1,176,482	-		GFF1171	0.32	-2.2
1,176,504	+		GFF1171	0.36	-0.0
1,176,524	+		GFF1171	0.41	+0.9
1,176,529	+		GFF1171	0.42	+1.1
1,176,532	-		GFF1171	0.42	-1.7
1,176,534	-		GFF1171	0.43	-0.4
1,176,541	+		GFF1171	0.44	+0.1
1,176,543	-		GFF1171	0.45	+0.6
1,176,569	+		GFF1171	0.50	+1.6
1,176,574	+		GFF1171	0.51	-0.2
1,176,594	-		GFF1171	0.55	-0.3
1,176,604	-		GFF1171	0.57	-0.0
1,176,612	+		GFF1171	0.59	-0.1
1,176,612	+		GFF1171	0.59	-1.6
1,176,612	+		GFF1171	0.59	+0.1
1,176,612	+		GFF1171	0.59	-0.4
1,176,620	-		GFF1171	0.61	+0.8
1,176,620	-		GFF1171	0.61	+0.4
1,176,620	-		GFF1171	0.61	+0.1
1,176,620	-		GFF1171	0.61	-0.4
1,176,622	+		GFF1171	0.61	+0.5
1,176,631	+		GFF1171	0.63	+1.1
1,176,631	-		GFF1171	0.63	+0.1
1,176,638	+		GFF1171	0.65	-1.4
1,176,638	+		GFF1171	0.65	-0.8
1,176,638	+		GFF1171	0.65	-0.7
1,176,638	+		GFF1171	0.65	-2.5
1,176,639	-		GFF1171	0.65	+0.9
1,176,641	-		GFF1171	0.65	-0.1
1,176,646	-		GFF1171	0.66	+0.6
1,176,646	-		GFF1171	0.66	+0.2
1,176,648	+		GFF1171	0.67	-0.5
1,176,668	-		GFF1171	0.71	+0.5
1,176,691	-		GFF1171	0.76	-0.6
1,176,693	+		GFF1171	0.76	+0.7
1,176,703	+		GFF1171	0.78	-0.7
1,176,708	+		GFF1171	0.79	-1.0
1,176,708	+		GFF1171	0.79	+0.3
1,176,708	+		GFF1171	0.79	-1.4
1,176,711	-		GFF1171	0.80	+0.1
1,176,716	-		GFF1171	0.81	-2.7
1,176,716	-		GFF1171	0.81	-1.0
1,176,730	+		GFF1171	0.84	-0.5
1,176,750	+		GFF1171	0.88	-2.1
1,176,752	+		GFF1171	0.89	+1.6
1,176,762	+				-0.9
1,176,762	+				+0.0
1,176,762	+				-2.5
1,176,762	+				+0.2
1,176,762	+				-1.9
1,176,762	+				+0.2
1,176,770	-				-2.2
1,176,770	-				-0.7
1,176,770	-				-2.0
1,176,770	-				+1.0
1,176,770	-				-2.0
1,176,770	-				-0.3
1,176,770	-				+0.3
1,176,770	-				-1.0
1,176,770	-				-0.5
1,176,770	-				+0.7
1,176,787	+				-0.0
1,176,792	+				-0.3
1,176,809	+				-0.8
1,176,817	-				+0.4
1,176,818	+				-0.8
1,176,835	-				-1.0
1,176,836	-				-0.9
1,176,841	-				-0.2
1,176,872	-				+0.8
1,176,881	+				-1.5
1,176,910	-		GFF1172	0.10	+0.2
1,176,917	+		GFF1172	0.11	+0.1
1,176,939	+		GFF1172	0.13	+0.4
1,176,939	+		GFF1172	0.13	+0.0
1,176,939	+		GFF1172	0.13	-0.3
1,176,947	-		GFF1172	0.14	+0.5
1,176,947	-		GFF1172	0.14	-1.4
1,176,947	-		GFF1172	0.14	+0.9
1,176,947	-		GFF1172	0.14	+0.2
1,176,971	+		GFF1172	0.16	-0.4
1,176,971	+		GFF1172	0.16	+0.7
1,176,971	+		GFF1172	0.16	+0.1
1,176,971	+		GFF1172	0.16	+0.0
1,176,971	+		GFF1172	0.16	-1.9
1,176,971	+		GFF1172	0.16	-1.7
1,176,971	+		GFF1172	0.16	-1.3
1,176,971	+		GFF1172	0.16	-0.1
1,176,971	+		GFF1172	0.16	-0.5
1,176,971	+		GFF1172	0.16	-0.2
1,176,971	+		GFF1172	0.16	-2.2
1,176,971	+		GFF1172	0.16	-0.4
1,176,971	+		GFF1172	0.16	-0.6
1,176,979	-		GFF1172	0.17	+1.0
1,176,979	-		GFF1172	0.17	-0.9
1,176,979	-		GFF1172	0.17	-0.5
1,176,994	+		GFF1172	0.19	+0.1
1,177,013	+		GFF1172	0.20	+0.8
1,177,013	+		GFF1172	0.20	-2.2
1,177,013	+		GFF1172	0.20	+0.3
1,177,026	-		GFF1172	0.22	+0.1
1,177,041	-		GFF1172	0.23	-0.9
1,177,043	-		GFF1172	0.23	-0.8
1,177,078	+		GFF1172	0.27	-1.5
1,177,080	+		GFF1172	0.27	-1.5
1,177,090	+		GFF1172	0.28	+0.2
1,177,090	+		GFF1172	0.28	-0.0
1,177,096	-		GFF1172	0.29	+0.5
1,177,098	-		GFF1172	0.29	-0.4
1,177,098	-		GFF1172	0.29	+0.2
1,177,098	-		GFF1172	0.29	-2.0
1,177,098	-		GFF1172	0.29	-1.9
1,177,108	-		GFF1172	0.30	-1.0
1,177,123	+		GFF1172	0.31	+0.5
1,177,123	+		GFF1172	0.31	-0.5
1,177,125	-		GFF1172	0.31	-0.9
1,177,126	+		GFF1172	0.32	-2.0
1,177,131	-		GFF1172	0.32	-0.6
1,177,134	-		GFF1172	0.32	+1.2
1,177,134	-		GFF1172	0.32	+0.9
1,177,149	+		GFF1172	0.34	-0.9
1,177,149	+		GFF1172	0.34	+1.5
1,177,157	-		GFF1172	0.35	+0.2
1,177,210	-		GFF1172	0.40	-1.4
1,177,214	-		GFF1172	0.40	-1.7
1,177,235	+		GFF1172	0.42	-0.6
1,177,248	+		GFF1172	0.44	+0.2
1,177,253	+		GFF1172	0.44	+1.6
1,177,275	+		GFF1172	0.46	-2.5
1,177,278	-		GFF1172	0.47	-0.5
1,177,283	-		GFF1172	0.47	-0.7
1,177,299	+		GFF1172	0.49	+0.3
1,177,312	+		GFF1172	0.50	-0.6
1,177,320	-		GFF1172	0.51	-2.1
1,177,320	-		GFF1172	0.51	-0.2
1,177,339	+		GFF1172	0.53	-0.2
1,177,356	+		GFF1172	0.54	-0.9
1,177,357	-		GFF1172	0.54	-2.4
1,177,366	-		GFF1172	0.55	+0.3
1,177,392	-		GFF1172	0.58	+0.7
1,177,434	+		GFF1172	0.62	-0.4
1,177,434	+		GFF1172	0.62	-0.5
1,177,434	+		GFF1172	0.62	-1.6
1,177,439	+		GFF1172	0.62	-2.1
1,177,439	+		GFF1172	0.62	-0.9
1,177,439	+		GFF1172	0.62	-0.8
1,177,439	+		GFF1172	0.62	+0.4
1,177,439	+		GFF1172	0.62	+0.0
1,177,439	+		GFF1172	0.62	-0.6
1,177,442	-		GFF1172	0.63	+0.6
1,177,444	+		GFF1172	0.63	+0.0
1,177,444	+		GFF1172	0.63	-0.3
1,177,445	-		GFF1172	0.63	-1.7
1,177,447	-		GFF1172	0.63	-0.3
1,177,447	-		GFF1172	0.63	-1.1
1,177,447	-		GFF1172	0.63	-1.0
1,177,447	-		GFF1172	0.63	-0.5
1,177,452	-		GFF1172	0.64	-0.7
1,177,457	+		GFF1172	0.64	-0.1
1,177,461	+		GFF1172	0.65	+0.0
1,177,461	+		GFF1172	0.65	-0.0
1,177,467	+		GFF1172	0.65	-0.6
1,177,469	-		GFF1172	0.65	-0.8
1,177,469	-		GFF1172	0.65	-0.8
1,177,481	-		GFF1172	0.66	-0.6
1,177,484	+		GFF1172	0.67	+0.1
1,177,494	+		GFF1172	0.68	+1.6
1,177,510	+		GFF1172	0.69	-0.2
1,177,510	+		GFF1172	0.69	-1.7
1,177,518	-		GFF1172	0.70	-1.2
1,177,524	+		GFF1172	0.71	-1.2
1,177,582	+		GFF1172	0.76	+0.4
1,177,588	+		GFF1172	0.77	+1.2
1,177,590	-		GFF1172	0.77	+2.0
1,177,596	-		GFF1172	0.78	+0.6
1,177,620	-		GFF1172	0.80	-0.9
1,177,625	+		GFF1172	0.81	-0.1
1,177,628	+		GFF1172	0.81	-2.4
1,177,642	+		GFF1172	0.82	-0.8
1,177,643	-		GFF1172	0.82	-1.8
1,177,643	-		GFF1172	0.82	+0.0
1,177,643	-		GFF1172	0.82	+1.3
1,177,674	+		GFF1172	0.85	-0.8
1,177,674	+		GFF1172	0.85	-0.3
1,177,674	+		GFF1172	0.85	-2.0
1,177,674	+		GFF1172	0.85	-1.4
1,177,682	-		GFF1172	0.86	+1.3
1,177,682	-		GFF1172	0.86	+0.3
1,177,682	-		GFF1172	0.86	+0.8
1,177,682	-		GFF1172	0.86	-0.2
1,177,682	-		GFF1172	0.86	-0.2
1,177,682	-		GFF1172	0.86	-0.0
1,177,682	-		GFF1172	0.86	+0.4
1,177,682	-		GFF1172	0.86	-1.5
1,177,682	-		GFF1172	0.86	-1.3
1,177,682	-		GFF1172	0.86	-0.8
1,177,682	-		GFF1172	0.86	-1.7
1,177,704	+		GFF1172	0.88	+0.2
1,177,719	-		GFF1172	0.90	-1.0
1,177,721	-				+0.5
1,177,732	+				-1.6
1,177,733	+				+0.8
1,177,737	+				+1.4
1,177,741	-				+0.1
1,177,756	+				-1.9
1,177,756	+				+0.3
1,177,756	+				-0.2
1,177,756	+				+0.8
1,177,756	+				+1.4
1,177,756	+				-0.9
1,177,756	+				+0.1
1,177,756	+				-0.0
1,177,756	+				-0.3
1,177,756	+				-0.9
1,177,756	+				-0.6
1,177,756	+				+0.3
1,177,757	+				-2.4
1,177,762	-				+0.3
1,177,764	-				-0.9
1,177,764	-				-0.5
1,177,764	-				+0.7
1,177,764	-				-1.4
1,177,764	-				-1.8
1,177,764	-				+0.1
1,177,764	-				+0.1
1,177,764	-				+0.9
1,177,764	-				-1.5
1,177,764	-				+1.0
1,177,764	-				-0.2
1,177,764	-				+0.0
1,177,775	+				+0.1
1,177,807	+				-0.9
1,177,828	+				-0.3
1,177,828	+				+1.1
1,177,836	+				-0.3
1,177,836	-				-0.5
1,177,853	+				-0.3
1,177,861	+				-1.5
1,177,861	+				+1.0
1,177,861	+				+0.6
1,177,861	+				-0.6
1,177,861	+				+0.6
1,177,861	+				-0.4
1,177,861	-				-0.2
1,177,863	+		GFF1173	0.10	+0.4
1,177,863	+		GFF1173	0.10	+0.2
1,177,863	+		GFF1173	0.10	-0.6
1,177,863	-		GFF1173	0.10	-0.2
1,177,869	-		GFF1173	0.12	-0.0
1,177,871	-		GFF1173	0.12	-2.6
1,177,871	-		GFF1173	0.12	+0.0
1,177,877	+		GFF1173	0.13	-2.4
1,177,885	-		GFF1173	0.15	+0.5
1,177,912	+		GFF1173	0.21	-1.4
1,177,912	+		GFF1173	0.21	+0.2
1,177,912	+		GFF1173	0.21	-2.5
1,177,917	+		GFF1173	0.23	-0.4
1,177,917	+		GFF1173	0.23	-1.0
1,177,917	+		GFF1173	0.23	-1.9
1,177,917	+		GFF1173	0.23	-1.2
1,177,917	+		GFF1173	0.23	-0.2
1,177,917	+		GFF1173	0.23	+0.0
1,177,917	+		GFF1173	0.23	-1.4
1,177,920	-		GFF1173	0.23	+0.9
1,177,920	-		GFF1173	0.23	+0.6
1,177,920	-		GFF1173	0.23	+0.4
1,177,925	-		GFF1173	0.24	-0.4
1,177,925	-		GFF1173	0.24	-0.6
1,177,926	-		GFF1173	0.25	-0.5
1,177,944	-		GFF1173	0.29	-0.2
1,177,953	-		GFF1173	0.31	+1.1
1,177,961	+		GFF1173	0.33	-0.2
1,178,000	+		GFF1173	0.42	-0.6
1,178,000	+		GFF1173	0.42	-0.6
1,178,004	+		GFF1173	0.42	-1.8
1,178,008	-		GFF1173	0.43	+0.1
1,178,011	+		GFF1173	0.44	+0.4
1,178,031	+		GFF1173	0.49	+0.5
1,178,055	+		GFF1173	0.54	+0.7
1,178,055	+		GFF1173	0.54	+0.2
1,178,055	+		GFF1173	0.54	+0.5
1,178,055	+		GFF1173	0.54	+0.9
1,178,055	+		GFF1173	0.54	-1.2
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