Strain Fitness in Sphingobium sp. HT1-2 around GFF1158

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,162,744	-		GFF1157	0.56	-0.7
1,162,767	+		GFF1157	0.65	-0.2
1,162,767	+		GFF1157	0.65	+1.6
1,162,773	+		GFF1157	0.67	-0.4
1,162,775	-		GFF1157	0.67	-1.8
1,162,775	-		GFF1157	0.67	-1.1
1,162,777	+		GFF1157	0.68	-0.9
1,162,781	-		GFF1157	0.70	-2.1
1,162,781	-		GFF1157	0.70	-0.2
1,162,789	+		GFF1157	0.72	+0.4
1,162,793	+		GFF1157	0.74	-0.1
1,162,803	+		GFF1157	0.77	+1.2
1,162,803	+		GFF1157	0.77	-0.6
1,162,803	+		GFF1157	0.77	+0.7
1,162,811	-		GFF1157	0.80	+1.1
1,162,811	-		GFF1157	0.80	-1.2
1,162,811	-		GFF1157	0.80	-0.3
1,162,811	-		GFF1157	0.80	-0.8
1,162,811	-		GFF1157	0.80	+1.1
1,162,827	-		GFF1157	0.86	-0.5
1,162,831	+		GFF1157	0.87	+0.7
1,162,831	+		GFF1157	0.87	-1.7
1,162,839	-				+0.9
1,162,841	+				-0.3
1,162,841	+				-1.1
1,162,841	+				-1.0
1,162,851	+				+0.2
1,162,870	+				+0.4
1,162,870	+				-0.3
1,162,870	+				-1.4
1,162,870	+				-0.7
1,162,870	+				+0.1
1,162,870	+				+0.2
1,162,878	-				+0.0
1,162,878	-				-3.0
1,162,878	-				-0.6
1,162,878	-				-0.5
1,162,878	-				+1.0
1,162,897	+				+0.2
1,162,897	+				-0.8
1,162,905	-				-2.3
1,162,905	-				-1.0
1,162,907	+				-0.0
1,162,915	-				-1.7
1,162,915	-				-1.5
1,162,915	-				-0.3
1,162,915	-				-1.5
1,162,915	-				+1.1
1,162,917	+				-0.8
1,162,917	+				-1.4
1,162,917	+				-0.2
1,162,917	+				+0.5
1,162,917	+				-1.3
1,162,917	+				+0.1
1,162,917	+				+0.1
1,162,917	+				-0.7
1,162,917	+				-1.3
1,162,917	+				+1.4
1,162,917	+				-2.0
1,162,923	-				+1.1
1,162,923	-				+0.5
1,162,925	-				-0.4
1,162,925	-				-0.7
1,162,925	-				-1.4
1,162,925	-				+0.1
1,162,925	-				-0.1
1,162,925	-				-1.2
1,162,925	-				-0.1
1,162,925	-				-2.4
1,162,925	-				-1.9
1,162,925	-				-1.9
1,162,925	-				-1.1
1,162,935	-				-0.4
1,162,984	+				-2.3
1,162,992	-				+1.3
1,163,013	-				+1.2
1,163,021	-				-1.2
1,163,062	-				-1.5
1,163,067	+				+0.8
1,163,073	+				-0.7
1,163,077	+				+1.0
1,163,081	-				-0.2
1,163,081	-				+0.4
1,163,084	+				-1.5
1,163,084	+				-0.8
1,163,092	-				-0.3
1,163,112	+				-0.3
1,163,117	+				-1.2
1,163,120	-				+0.0
1,163,125	-				-1.5
1,163,140	+				-1.0
1,163,149	+				-1.6
1,163,157	-				+1.0
1,163,175	+				-0.5
1,163,185	+				+1.5
1,163,185	+				+0.2
1,163,185	+				-1.6
1,163,185	+				-1.2
1,163,185	+				-1.4
1,163,185	+				+0.0
1,163,185	+				+0.1
1,163,185	+				-0.1
1,163,185	+				-1.3
1,163,193	-				-0.3
1,163,193	-				+0.1
1,163,193	-				+0.3
1,163,193	-				-1.0
1,163,193	-				-1.1
1,163,193	-				-0.1
1,163,198	-				+1.2
1,163,200	+				-0.3
1,163,200	+				+0.7
1,163,208	-				+0.6
1,163,208	-				+0.1
1,163,210	+				-0.2
1,163,213	-				+0.6
1,163,218	-				-0.2
1,163,253	+				+0.3
1,163,258	+				+1.3
1,163,258	+				+0.4
1,163,258	+				-0.5
1,163,258	+				+0.4
1,163,266	-				-0.6
1,163,266	-				-0.6
1,163,266	-				-0.2
1,163,266	-				-0.8
1,163,271	-				-1.2
1,163,295	-				+1.1
1,163,303	+				+0.8
1,163,333	+				+0.2
1,163,341	-				-0.5
1,163,363	-				-2.6
1,163,363	-				-1.5
1,163,364	-				+1.5
1,163,383	-				+0.3
1,163,398	-				-0.3
1,163,403	-				+0.8
1,163,509	+				+0.2
1,163,509	+				-0.4
1,163,509	+				-1.2
1,163,517	+				-0.8
1,163,536	+				+0.8
1,163,536	+				+1.0
1,163,536	+				+1.4
1,163,554	-				-1.8
1,163,576	-				+0.6
1,163,576	-				-0.9
1,163,581	-				+0.8
1,163,586	-				-0.2
1,163,598	-				+0.3
1,163,603	+				+0.3
1,163,603	-				+0.9
1,163,619	+				-1.2
1,163,619	+				-0.6
1,163,647	+				+0.9
1,163,649	-				+0.3
1,163,655	-				+0.1
1,163,662	+				+0.4
1,163,671	-				+0.1
1,163,671	-				-0.1
1,163,673	+				-0.7
1,163,680	+				+0.3
1,163,681	-				+0.3
1,163,681	-				-1.7
1,163,688	-				-0.1
1,163,688	-				-2.7
1,163,688	-				+0.3
1,163,688	-				-1.0
1,163,688	-				-1.4
1,163,693	-				-1.9
1,163,697	+				-1.2
1,163,707	+				+0.1
1,163,707	+				-0.1
1,163,707	+				+0.2
1,163,707	+				-0.5
1,163,707	+				+0.3
1,163,707	+				-0.4
1,163,707	+				+0.7
1,163,707	+				+0.8
1,163,710	-				-1.5
1,163,715	-				+0.9
1,163,715	-				-0.5
1,163,715	-				-2.5
1,163,715	-				+0.5
1,163,715	-				+0.6
1,163,715	-				+0.6
1,163,715	-				+0.3
1,163,715	-				-0.6
1,163,715	-				-0.3
1,163,715	-				+1.2
1,163,715	-				-0.2
1,163,715	-				+1.5
1,163,715	-				-1.8
1,163,715	-				+1.4
1,163,715	-				-2.0
1,163,715	-				-1.8
1,163,727	+				-0.2
1,163,727	+				+1.0
1,163,729	+				+0.1
1,163,732	+				+1.3
1,163,732	+				+0.7
1,163,734	+				+1.5
1,163,734	+				+1.0
1,163,737	+				-1.0
1,163,740	-				+0.3
1,163,742	-				+0.2
1,163,756	+				+0.8
1,163,759	-				+0.4
1,163,796	+				-0.7
1,163,796	+				-0.6
1,163,802	-				+0.7
1,163,802	-				-0.4
1,163,802	-				+0.3
1,163,802	-				-0.4
1,163,804	-				-0.4
1,163,804	-				-0.9
1,163,804	-				-1.4
1,163,804	-				-0.8
1,163,815	+				-0.2
1,163,815	+				-2.3
1,163,817	-				+1.4
1,163,820	+				-0.3
1,163,820	+				-0.9
1,163,823	-				-1.9
1,163,823	-				-0.3
1,163,823	-				-0.4
1,163,823	-				+0.3
1,163,825	+				+0.5
1,163,825	+				-0.6
1,163,825	+				-0.4
1,163,825	+				+0.2
1,163,825	+				-1.6
1,163,825	+				+0.2
1,163,830	+				-0.7
1,163,830	+				+0.4
1,163,833	-				+1.0
1,163,833	-				-0.7
1,163,833	-				+0.1
1,163,833	-				-0.3
1,163,833	-				-1.6
1,163,833	-				+0.4
1,163,833	-				+0.7
1,163,838	-				+0.1
1,163,838	-				-1.2
1,163,838	-				-0.5
1,163,838	-				+0.6
1,163,838	-				+1.6
1,163,843	+				-1.8
1,163,845	-		GFF1158	0.10	-0.2
1,163,851	-		GFF1158	0.11	-0.2
1,163,851	-		GFF1158	0.11	-1.6
1,163,856	-		GFF1158	0.11	+0.4
1,163,859	-		GFF1158	0.12	-1.4
1,163,863	-		GFF1158	0.12	-0.7
1,163,892	+		GFF1158	0.15	-0.1
1,163,900	-		GFF1158	0.16	+0.0
1,163,949	+		GFF1158	0.20	-0.5
1,163,949	+		GFF1158	0.20	+0.4
1,163,949	+		GFF1158	0.20	-2.4
1,163,949	+		GFF1158	0.20	+0.1
1,163,952	-		GFF1158	0.21	-0.2
1,163,952	-		GFF1158	0.21	+0.9
1,163,952	-		GFF1158	0.21	+0.3
1,163,957	-		GFF1158	0.21	-1.9
1,163,957	-		GFF1158	0.21	+0.7
1,163,957	-		GFF1158	0.21	+0.2
1,163,957	-		GFF1158	0.21	+0.4
1,163,992	+		GFF1158	0.25	-0.2
1,163,997	+		GFF1158	0.25	+0.8
1,164,000	-		GFF1158	0.26	-0.4
1,164,000	-		GFF1158	0.26	-0.4
1,164,023	+		GFF1158	0.28	+0.6
1,164,023	+		GFF1158	0.28	-0.4
1,164,026	-		GFF1158	0.28	-1.0
1,164,027	-		GFF1158	0.28	-0.8
1,164,028	+		GFF1158	0.28	-0.9
1,164,032	+		GFF1158	0.29	-0.8
1,164,040	+		GFF1158	0.30	-1.5
1,164,048	-		GFF1158	0.30	+1.0
1,164,051	+		GFF1158	0.31	+0.3
1,164,051	+		GFF1158	0.31	+0.8
1,164,059	-		GFF1158	0.31	-2.2
1,164,059	-		GFF1158	0.31	-0.8
1,164,073	+		GFF1158	0.33	-0.1
1,164,078	+		GFF1158	0.33	-0.6
1,164,078	+		GFF1158	0.33	-0.5
1,164,078	+		GFF1158	0.33	-0.1
1,164,078	+		GFF1158	0.33	+1.6
1,164,078	+		GFF1158	0.33	+0.6
1,164,078	+		GFF1158	0.33	+0.9
1,164,080	+		GFF1158	0.34	-1.8
1,164,081	-		GFF1158	0.34	-2.0
1,164,081	-		GFF1158	0.34	-0.9
1,164,081	-		GFF1158	0.34	-1.7
1,164,081	-		GFF1158	0.34	+0.7
1,164,081	-		GFF1158	0.34	-0.7
1,164,083	+		GFF1158	0.34	+0.4
1,164,083	+		GFF1158	0.34	-0.4
1,164,083	+		GFF1158	0.34	-0.2
1,164,084	+		GFF1158	0.34	-0.5
1,164,084	+		GFF1158	0.34	-0.4
1,164,086	-		GFF1158	0.34	-2.3
1,164,086	-		GFF1158	0.34	-0.1
1,164,086	-		GFF1158	0.34	-0.6
1,164,086	-		GFF1158	0.34	-1.9
1,164,086	-		GFF1158	0.34	+0.8
1,164,086	-		GFF1158	0.34	-0.4
1,164,086	-		GFF1158	0.34	-1.0
1,164,086	-		GFF1158	0.34	+1.0
1,164,099	+		GFF1158	0.35	+0.1
1,164,107	-		GFF1158	0.36	+0.1
1,164,132	-		GFF1158	0.39	+0.1
1,164,132	-		GFF1158	0.39	-1.4
1,164,137	+		GFF1158	0.39	-0.4
1,164,137	+		GFF1158	0.39	-1.6
1,164,137	+		GFF1158	0.39	-0.6
1,164,140	-		GFF1158	0.40	-0.5
1,164,148	+		GFF1158	0.40	-1.6
1,164,152	+		GFF1158	0.41	-1.9
1,164,152	+		GFF1158	0.41	-1.3
1,164,160	-		GFF1158	0.41	-0.7
1,164,160	-		GFF1158	0.41	-0.6
1,164,168	+		GFF1158	0.42	-0.5
1,164,168	+		GFF1158	0.42	+0.5
1,164,168	+		GFF1158	0.42	+1.2
1,164,176	-		GFF1158	0.43	-1.7
1,164,176	-		GFF1158	0.43	-2.0
1,164,205	-		GFF1158	0.46	-0.1
1,164,214	+		GFF1158	0.47	+0.2
1,164,214	+		GFF1158	0.47	-0.4
1,164,214	+		GFF1158	0.47	-0.5
1,164,222	-		GFF1158	0.48	+0.8
1,164,240	-		GFF1158	0.49	+0.5
1,164,253	+		GFF1158	0.51	+0.0
1,164,253	+		GFF1158	0.51	-1.5
1,164,253	+		GFF1158	0.51	+0.5
1,164,253	+		GFF1158	0.51	-1.1
1,164,253	+		GFF1158	0.51	-0.8
1,164,253	+		GFF1158	0.51	-0.1
1,164,261	-		GFF1158	0.52	-1.5
1,164,261	-		GFF1158	0.52	+1.2
1,164,261	-		GFF1158	0.52	-0.6
1,164,261	-		GFF1158	0.52	+0.8
1,164,261	-		GFF1158	0.52	+0.9
1,164,263	+		GFF1158	0.52	-1.9
1,164,263	+		GFF1158	0.52	-0.9
1,164,263	+		GFF1158	0.52	+0.7
1,164,263	+		GFF1158	0.52	+0.2
1,164,271	-		GFF1158	0.53	+0.3
1,164,271	-		GFF1158	0.53	+1.0
1,164,271	-		GFF1158	0.53	-1.0
1,164,291	-		GFF1158	0.55	-0.5
1,164,310	+		GFF1158	0.56	+1.2
1,164,328	-		GFF1158	0.58	-1.2
1,164,355	-		GFF1158	0.61	+0.5
1,164,357	+		GFF1158	0.61	-0.2
1,164,357	+		GFF1158	0.61	-0.0
1,164,357	+		GFF1158	0.61	+1.6
1,164,357	+		GFF1158	0.61	+0.8
1,164,357	+		GFF1158	0.61	+0.8
1,164,357	+		GFF1158	0.61	-1.6
1,164,357	+		GFF1158	0.61	-1.2
1,164,357	+		GFF1158	0.61	-0.6
1,164,365	-		GFF1158	0.62	-0.5
1,164,365	-		GFF1158	0.62	+0.2
1,164,385	+		GFF1158	0.64	+1.5
1,164,423	+		GFF1158	0.68	+0.8
1,164,423	+		GFF1158	0.68	-1.4
1,164,423	+		GFF1158	0.68	+1.9
1,164,423	+		GFF1158	0.68	+0.4
1,164,454	+		GFF1158	0.71	+0.7
1,164,454	-		GFF1158	0.71	+0.3
1,164,454	-		GFF1158	0.71	-1.1
1,164,464	-		GFF1158	0.72	-0.2
1,164,496	-		GFF1158	0.75	+2.0
1,164,497	-		GFF1158	0.75	-2.9
1,164,515	+		GFF1158	0.77	-0.0
1,164,525	+		GFF1158	0.78	-0.3
1,164,533	-		GFF1158	0.79	+1.7
1,164,533	-		GFF1158	0.79	+0.2
1,164,533	-		GFF1158	0.79	+1.1
1,164,548	+		GFF1158	0.80	-0.2
1,164,548	+		GFF1158	0.80	+0.1
1,164,563	+		GFF1158	0.82	+0.0
1,164,563	+		GFF1158	0.82	-0.2
1,164,563	+		GFF1158	0.82	+0.4
1,164,563	+		GFF1158	0.82	-0.4
1,164,563	+		GFF1158	0.82	-1.4
1,164,571	-		GFF1158	0.82	+0.6
1,164,583	-		GFF1158	0.84	+1.4
1,164,633	+		GFF1158	0.89	-0.7
1,164,642	+		GFF1158	0.89	+0.3
1,164,647	+				-0.0
1,164,647	+				-0.8
1,164,647	+				-1.9
1,164,647	+				-0.8
1,164,647	+				+0.1
1,164,647	+				-2.8
1,164,647	+				+1.9
1,164,647	+				+0.1
1,164,650	-				-0.7
1,164,650	-				-0.4
1,164,650	-				+1.0
1,164,655	-				+0.2
1,164,655	-				+1.2
1,164,655	-				-1.9
1,164,694	-				-0.4
1,164,711	+				+0.2
1,164,711	+				-1.8
1,164,711	+				+0.1
1,164,714	-				+0.9
1,164,719	-				-0.6
1,164,719	-				-0.1
1,164,719	-				-0.1
1,164,719	-				-0.4
1,164,721	+				-1.6
1,164,747	+				+1.2
1,164,747	+				-0.2
1,164,755	-				-0.0
1,164,755	-				+0.1
1,164,755	-				-1.0
1,164,757	+				-0.3
1,164,757	+				+0.9
1,164,774	-				-0.7
1,164,842	+				+0.2
1,164,847	+				-1.6
1,164,847	+				+0.1
1,164,850	-				-0.5
1,164,862	-				+1.0
1,164,862	-				-0.7
1,164,887	+				-0.9
1,164,959	+				-0.7
1,164,978	+				+1.3
1,165,021	-				-1.1