Strain Fitness in Sphingobium sp. HT1-2 around GFF1081

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,086,409	-		GFF1079	0.60	-0.2
1,086,413	-		GFF1079	0.61	-0.8
1,086,423	-		GFF1079	0.63	-0.4
1,086,424	-		GFF1079	0.63	-1.0
1,086,424	-		GFF1079	0.63	-0.3
1,086,424	-		GFF1079	0.63	+1.8
1,086,452	+		GFF1079	0.70	+0.2
1,086,452	+		GFF1079	0.70	+0.7
1,086,460	-		GFF1079	0.72	-0.1
1,086,460	-		GFF1079	0.72	-1.2
1,086,460	-		GFF1079	0.72	-2.9
1,086,470	-		GFF1079	0.74	-2.3
1,086,470	-		GFF1079	0.74	-0.5
1,086,491	+		GFF1079	0.79	-2.2
1,086,499	-		GFF1079	0.81	-0.2
1,086,499	-		GFF1079	0.81	-0.4
1,086,501	+		GFF1079	0.81	+0.1
1,086,501	+		GFF1079	0.81	-1.3
1,086,501	+		GFF1079	0.81	+0.6
1,086,501	+		GFF1079	0.81	-1.6
1,086,501	+		GFF1079	0.81	-1.5
1,086,501	+		GFF1079	0.81	-0.2
1,086,501	+		GFF1079	0.81	+0.5
1,086,501	+		GFF1079	0.81	-1.1
1,086,501	+		GFF1079	0.81	-0.1
1,086,501	+		GFF1079	0.81	-0.2
1,086,501	+		GFF1079	0.81	+1.1
1,086,501	+		GFF1079	0.81	-1.5
1,086,501	+		GFF1079	0.81	-1.7
1,086,501	+		GFF1079	0.81	-1.4
1,086,505	-		GFF1079	0.82	+0.3
1,086,509	-		GFF1079	0.83	-0.7
1,086,509	-		GFF1079	0.83	+0.2
1,086,509	-		GFF1079	0.83	-0.2
1,086,509	-		GFF1079	0.83	-1.5
1,086,509	-		GFF1079	0.83	-0.8
1,086,509	-		GFF1079	0.83	+0.4
1,086,509	-		GFF1079	0.83	+0.9
1,086,509	-		GFF1079	0.83	+0.9
1,086,509	-		GFF1079	0.83	-1.4
1,086,509	-		GFF1079	0.83	-0.3
1,086,509	-		GFF1079	0.83	-0.1
1,086,509	-		GFF1079	0.83	+0.1
1,086,509	-		GFF1079	0.83	+0.5
1,086,509	-		GFF1079	0.83	+0.1
1,086,533	+		GFF1079	0.89	+0.2
1,086,538	+		GFF1079	0.90	-1.3
1,086,541	-				-0.3
1,086,565	+				-1.1
1,086,614	+				-0.3
1,086,644	+				-0.5
1,086,644	+				-0.0
1,086,644	+				+1.0
1,086,652	-				-0.7
1,086,654	+				+0.2
1,086,658	-				-2.3
1,086,722	-				-0.4
1,086,723	+				-0.6
1,086,737	+				+0.2
1,086,738	-				+0.9
1,086,743	-				+0.8
1,086,756	-		GFF1080	0.10	-0.3
1,086,766	-		GFF1080	0.11	-1.3
1,086,770	+		GFF1080	0.12	+1.5
1,086,770	+		GFF1080	0.12	+1.5
1,086,778	-		GFF1080	0.13	-1.0
1,086,793	+		GFF1080	0.15	+0.2
1,086,808	+		GFF1080	0.17	-1.6
1,086,814	+		GFF1080	0.18	-0.3
1,086,814	+		GFF1080	0.18	+0.9
1,086,814	+		GFF1080	0.18	+0.0
1,086,814	-		GFF1080	0.18	-0.7
1,086,816	+		GFF1080	0.19	-0.1
1,086,822	-		GFF1080	0.19	-1.0
1,086,822	-		GFF1080	0.19	+0.9
1,086,822	-		GFF1080	0.19	-1.1
1,086,822	-		GFF1080	0.19	+0.1
1,086,822	-		GFF1080	0.19	+0.7
1,086,823	-		GFF1080	0.19	+0.1
1,086,825	+		GFF1080	0.20	+0.7
1,086,829	-		GFF1080	0.20	-0.3
1,086,834	+		GFF1080	0.21	-0.6
1,086,834	+		GFF1080	0.21	+0.2
1,086,857	-		GFF1080	0.24	+1.8
1,086,857	-		GFF1080	0.24	+0.7
1,086,877	-		GFF1080	0.27	+0.6
1,086,884	+		GFF1080	0.28	+0.3
1,086,884	+		GFF1080	0.28	-0.6
1,086,884	+		GFF1080	0.28	+1.7
1,086,884	+		GFF1080	0.28	+0.0
1,086,884	+		GFF1080	0.28	+1.0
1,086,884	+		GFF1080	0.28	-0.2
1,086,884	+		GFF1080	0.28	-0.3
1,086,884	+		GFF1080	0.28	+0.5
1,086,891	+		GFF1080	0.29	-1.1
1,086,892	-		GFF1080	0.29	+0.2
1,086,892	-		GFF1080	0.29	-0.4
1,086,892	-		GFF1080	0.29	+0.2
1,086,892	-		GFF1080	0.29	-0.1
1,086,893	+		GFF1080	0.29	-0.3
1,086,895	+		GFF1080	0.30	-1.1
1,086,912	+		GFF1080	0.32	-0.5
1,086,926	-		GFF1080	0.34	+0.4
1,086,933	+		GFF1080	0.35	-0.4
1,086,941	-		GFF1080	0.36	+0.6
1,086,941	-		GFF1080	0.36	+0.8
1,086,941	-		GFF1080	0.36	-1.2
1,086,952	+		GFF1080	0.38	+0.9
1,086,953	+		GFF1080	0.38	+0.5
1,086,953	+		GFF1080	0.38	-2.1
1,086,960	+		GFF1080	0.39	+0.6
1,086,960	+		GFF1080	0.39	-0.6
1,086,960	+		GFF1080	0.39	-0.5
1,086,960	+		GFF1080	0.39	-0.5
1,086,960	+		GFF1080	0.39	-0.7
1,086,960	+		GFF1080	0.39	+0.4
1,086,960	-		GFF1080	0.39	+0.7
1,086,960	-		GFF1080	0.39	+1.6
1,086,965	+		GFF1080	0.40	-2.1
1,086,965	+		GFF1080	0.40	+0.2
1,086,968	-		GFF1080	0.40	-1.5
1,086,968	-		GFF1080	0.40	+0.1
1,086,978	+		GFF1080	0.41	-1.7
1,087,005	+		GFF1080	0.45	-0.6
1,087,053	+		GFF1080	0.52	-0.3
1,087,056	+		GFF1080	0.52	+0.6
1,087,056	-		GFF1080	0.52	-2.3
1,087,061	-		GFF1080	0.53	+0.7
1,087,093	+		GFF1080	0.58	+0.1
1,087,100	+		GFF1080	0.59	-0.4
1,087,101	+		GFF1080	0.59	+0.7
1,087,101	+		GFF1080	0.59	-2.3
1,087,108	-		GFF1080	0.60	+0.2
1,087,114	-		GFF1080	0.61	-1.8
1,087,118	-		GFF1080	0.61	-0.4
1,087,119	-		GFF1080	0.61	-1.4
1,087,119	-		GFF1080	0.61	-0.4
1,087,121	+		GFF1080	0.62	-0.3
1,087,121	+		GFF1080	0.62	-0.2
1,087,121	+		GFF1080	0.62	+0.7
1,087,129	-		GFF1080	0.63	-0.5
1,087,131	+		GFF1080	0.63	-1.5
1,087,139	+		GFF1080	0.64	-0.7
1,087,139	-		GFF1080	0.64	+1.1
1,087,139	-		GFF1080	0.64	-0.2
1,087,147	-		GFF1080	0.65	-0.3
1,087,150	+		GFF1080	0.66	+0.3
1,087,158	-		GFF1080	0.67	-0.1
1,087,165	-		GFF1080	0.68	-0.1
1,087,174	-		GFF1080	0.69	+0.4
1,087,184	-		GFF1080	0.70	-0.3
1,087,184	-		GFF1080	0.70	+0.0
1,087,184	-		GFF1080	0.70	+0.4
1,087,250	-		GFF1080	0.80	-0.1
1,087,263	-		GFF1080	0.82	+0.6
1,087,264	+		GFF1080	0.82	-1.5
1,087,274	+		GFF1080	0.83	-2.3
1,087,284	+		GFF1080	0.85	-0.3
1,087,287	-		GFF1080	0.85	+0.8
1,087,287	-		GFF1080	0.85	-0.1
1,087,312	+		GFF1080	0.89	+1.6
1,087,340	+				+0.7
1,087,342	+				-1.6
1,087,346	+				-0.2
1,087,346	+				-2.7
1,087,348	-				-0.3
1,087,354	-				-1.8
1,087,362	+				-1.2
1,087,386	+				+0.4
1,087,429	+		GFF1081	0.14	+0.1
1,087,429	-		GFF1081	0.14	-0.8
1,087,429	-		GFF1081	0.14	-1.3
1,087,475	-		GFF1081	0.33	-1.3
1,087,475	-		GFF1081	0.33	-0.5
1,087,491	+		GFF1081	0.40	-1.5
1,087,498	-		GFF1081	0.42	-1.3
1,087,507	+		GFF1081	0.46	-0.6
1,087,507	+		GFF1081	0.46	-1.9
1,087,512	+		GFF1081	0.48	+0.7
1,087,515	-		GFF1081	0.49	+1.4
1,087,536	+		GFF1081	0.58	+0.6
1,087,536	+		GFF1081	0.58	-0.4
1,087,536	+		GFF1081	0.58	+0.8
1,087,536	+		GFF1081	0.58	+0.9
1,087,544	-		GFF1081	0.61	-1.1
1,087,544	-		GFF1081	0.61	+0.2
1,087,544	-		GFF1081	0.61	-0.2
1,087,544	-		GFF1081	0.61	-0.5
1,087,550	+		GFF1081	0.64	+0.3
1,087,550	+		GFF1081	0.64	-2.9
1,087,550	+		GFF1081	0.64	+0.8
1,087,558	-		GFF1081	0.67	+0.1
1,087,558	-		GFF1081	0.67	-1.2
1,087,558	-		GFF1081	0.67	-1.0
1,087,569	+		GFF1081	0.72	-0.0
1,087,583	-		GFF1081	0.77	-0.2
1,087,603	-		GFF1081	0.86	-1.1
1,087,610	+		GFF1081	0.88	+0.9
1,087,637	+				-0.0
1,087,654	+				+0.4
1,087,662	-				+0.2
1,087,690	+				-0.5
1,087,742	-				+1.4
1,087,743	+				-2.3
1,087,756	+				-1.7
1,087,764	-				-0.1
1,087,774	-				-0.6
1,087,793	-				+0.2
1,087,793	-				-0.3
1,087,797	+				-0.5
1,087,819	-		GFF1082	0.11	-0.9
1,087,826	+		GFF1082	0.11	+0.2
1,087,834	-		GFF1082	0.12	-0.7
1,087,834	-		GFF1082	0.12	-0.6
1,087,834	-		GFF1082	0.12	-2.3
1,087,857	-		GFF1082	0.15	-0.2
1,087,872	+		GFF1082	0.16	-1.6
1,087,880	-		GFF1082	0.17	+0.3
1,087,882	+		GFF1082	0.18	-0.2
1,087,882	+		GFF1082	0.18	+0.8
1,087,882	+		GFF1082	0.18	+0.2
1,087,886	-		GFF1082	0.18	-0.2
1,087,890	-		GFF1082	0.18	+1.4
1,087,890	-		GFF1082	0.18	-0.2
1,087,890	-		GFF1082	0.18	-0.8
1,087,890	-		GFF1082	0.18	-0.8
1,087,890	-		GFF1082	0.18	-1.1
1,087,890	-		GFF1082	0.18	+0.6
1,087,890	-		GFF1082	0.18	-0.6
1,087,909	-		GFF1082	0.21	-0.8
1,087,913	+		GFF1082	0.21	-1.6
1,087,913	+		GFF1082	0.21	-0.6
1,087,921	-		GFF1082	0.22	-0.5
1,087,921	-		GFF1082	0.22	+0.2
1,087,944	+		GFF1082	0.24	-0.5
1,087,946	-		GFF1082	0.25	+0.9
1,087,952	+		GFF1082	0.25	-1.5
1,087,952	+		GFF1082	0.25	-0.1
1,087,952	+		GFF1082	0.25	+0.3
1,087,973	-		GFF1082	0.28	-0.3
1,087,975	-		GFF1082	0.28	+0.2
1,087,987	+		GFF1082	0.29	-0.6
1,087,988	-		GFF1082	0.29	-1.0
1,087,988	-		GFF1082	0.29	-0.5
1,087,988	-		GFF1082	0.29	-1.2
1,087,997	-		GFF1082	0.30	-0.8
1,088,013	+		GFF1082	0.32	+0.7
1,088,021	-		GFF1082	0.33	+0.3
1,088,023	+		GFF1082	0.33	+0.0
1,088,028	+		GFF1082	0.34	+0.5
1,088,028	+		GFF1082	0.34	+0.2
1,088,031	-		GFF1082	0.34	+1.4
1,088,031	-		GFF1082	0.34	+1.4
1,088,036	-		GFF1082	0.35	-0.2
1,088,036	-		GFF1082	0.35	+0.0
1,088,036	-		GFF1082	0.35	-0.6
1,088,055	+		GFF1082	0.37	+0.0
1,088,068	-		GFF1082	0.38	-1.4
1,088,072	-		GFF1082	0.39	-0.5
1,088,107	+		GFF1082	0.43	+0.7
1,088,107	+		GFF1082	0.43	-0.3
1,088,117	+		GFF1082	0.44	+0.4
1,088,140	-		GFF1082	0.46	+1.0
1,088,140	-		GFF1082	0.46	+1.1
1,088,140	-		GFF1082	0.46	-0.3
1,088,180	+		GFF1082	0.51	-1.5
1,088,188	-		GFF1082	0.52	-0.4
1,088,193	-		GFF1082	0.52	+0.3
1,088,205	+		GFF1082	0.53	+1.9
1,088,205	+		GFF1082	0.53	+0.7
1,088,205	+		GFF1082	0.53	-1.3
1,088,205	+		GFF1082	0.53	-1.4
1,088,205	+		GFF1082	0.53	-1.2
1,088,211	-		GFF1082	0.54	+1.4
1,088,213	-		GFF1082	0.54	-1.6
1,088,213	-		GFF1082	0.54	+0.7
1,088,213	-		GFF1082	0.54	+0.1
1,088,222	+		GFF1082	0.55	-0.8
1,088,222	+		GFF1082	0.55	+0.2
1,088,222	+		GFF1082	0.55	-1.3
1,088,222	+		GFF1082	0.55	-1.8
1,088,230	-		GFF1082	0.56	-0.1
1,088,230	-		GFF1082	0.56	+0.9
1,088,240	+		GFF1082	0.57	+0.5
1,088,270	+		GFF1082	0.61	-1.5
1,088,291	+		GFF1082	0.63	+0.1
1,088,296	-		GFF1082	0.64	-0.8
1,088,298	+		GFF1082	0.64	-0.6
1,088,298	+		GFF1082	0.64	-2.7
1,088,298	+		GFF1082	0.64	-0.3
1,088,306	-		GFF1082	0.65	-1.3
1,088,306	-		GFF1082	0.65	+0.4
1,088,308	+		GFF1082	0.65	+1.1
1,088,308	+		GFF1082	0.65	-1.8
1,088,316	-		GFF1082	0.66	+1.5
1,088,316	-		GFF1082	0.66	+0.4
1,088,316	-		GFF1082	0.66	+0.5
1,088,316	-		GFF1082	0.66	-0.6
1,088,316	-		GFF1082	0.66	-1.2
1,088,316	-		GFF1082	0.66	+0.1
1,088,317	-		GFF1082	0.66	-0.6
1,088,324	-		GFF1082	0.67	-1.7
1,088,355	+		GFF1082	0.70	-1.3
1,088,404	+		GFF1082	0.76	+0.1
1,088,404	+		GFF1082	0.76	-1.2
1,088,404	+		GFF1082	0.76	-1.1
1,088,404	+		GFF1082	0.76	-0.0
1,088,409	+		GFF1082	0.76	-1.6
1,088,409	+		GFF1082	0.76	-0.7
1,088,412	-		GFF1082	0.76	+0.5
1,088,412	-		GFF1082	0.76	-1.3
1,088,412	-		GFF1082	0.76	-0.7
1,088,412	-		GFF1082	0.76	-1.5
1,088,414	+		GFF1082	0.77	+0.2
1,088,415	+		GFF1082	0.77	-0.8
1,088,417	-		GFF1082	0.77	-0.4
1,088,417	-		GFF1082	0.77	-0.1
1,088,422	-		GFF1082	0.78	+0.3
1,088,422	-		GFF1082	0.78	+0.9
1,088,423	-		GFF1082	0.78	-1.1
1,088,423	-		GFF1082	0.78	-0.4
1,088,423	-		GFF1082	0.78	-1.6
1,088,449	+		GFF1082	0.81	-1.7
1,088,492	+		GFF1082	0.85	-0.6
1,088,492	-		GFF1082	0.85	-0.9
1,088,497	+		GFF1082	0.86	-0.3
1,088,497	+		GFF1082	0.86	+0.2
1,088,500	-		GFF1082	0.86	-0.3
1,088,500	-		GFF1082	0.86	+0.1
1,088,500	-		GFF1082	0.86	-0.1
1,088,514	-		GFF1082	0.88	+0.2
1,088,516	-		GFF1082	0.88	+0.6
1,088,532	+		GFF1082	0.90	-0.8
1,088,555	+				+0.3
1,088,555	+				-1.2
1,088,580	+				+1.1
1,088,580	+				-0.2
1,088,588	-				-2.4
1,088,593	-				-0.8
1,088,597	+				-0.4
1,088,597	-				+0.2
1,088,598	-				+0.2
1,088,605	-				-1.2
1,088,605	-				+0.3
1,088,606	+				+0.6
1,088,607	+				-0.2
1,088,611	+				-0.0
1,088,611	+				+0.7
1,088,632	+				-0.9
1,088,632	+				+1.4
1,088,632	+				-0.2
1,088,632	+				-0.6
1,088,632	+				+0.1
1,088,632	+				+0.1
1,088,632	+				-1.0
1,088,632	+				-0.3