Strain Fitness in Sphingobium sp. HT1-2 around GFF1058

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,062,038	+		GFF1055	0.89	+0.5
1,062,040	+		GFF1055	0.90	+1.1
1,062,041	-		GFF1055	0.90	+0.9
1,062,046	-				+0.7
1,062,046	-				+0.2
1,062,059	+				+0.3
1,062,081	+				+1.3
1,062,094	+				-1.1
1,062,105	+				-0.8
1,062,105	+				+0.3
1,062,113	-				+0.8
1,062,113	-				-1.5
1,062,113	-				-0.3
1,062,113	-				-1.2
1,062,113	-				-1.3
1,062,113	-				-2.3
1,062,113	-				-0.1
1,062,210	+		GFF1056	0.59	-2.0
1,062,274	-				-0.3
1,062,361	-		GFF1057	0.10	-1.9
1,062,377	-		GFF1057	0.12	+0.1
1,062,380	-		GFF1057	0.13	-0.7
1,062,392	+		GFF1057	0.15	-0.2
1,062,392	+		GFF1057	0.15	-0.5
1,062,392	+		GFF1057	0.15	+1.0
1,062,400	-		GFF1057	0.16	+0.0
1,062,400	-		GFF1057	0.16	+0.7
1,062,400	-		GFF1057	0.16	+0.4
1,062,400	-		GFF1057	0.16	+0.8
1,062,400	-		GFF1057	0.16	+0.0
1,062,410	+		GFF1057	0.17	+0.7
1,062,415	+		GFF1057	0.18	+0.1
1,062,420	+		GFF1057	0.19	-1.6
1,062,420	+		GFF1057	0.19	-0.4
1,062,423	-		GFF1057	0.19	+0.6
1,062,425	-		GFF1057	0.19	-0.4
1,062,427	+		GFF1057	0.20	+0.1
1,062,428	-		GFF1057	0.20	-0.2
1,062,432	+		GFF1057	0.20	+0.3
1,062,433	-		GFF1057	0.20	-1.0
1,062,433	-		GFF1057	0.20	+1.7
1,062,434	+		GFF1057	0.21	-0.4
1,062,439	+		GFF1057	0.21	-0.9
1,062,442	-		GFF1057	0.22	-1.6
1,062,442	-		GFF1057	0.22	-0.8
1,062,442	-		GFF1057	0.22	-1.1
1,062,442	-		GFF1057	0.22	-0.2
1,062,442	-		GFF1057	0.22	-0.3
1,062,466	+		GFF1057	0.25	+0.3
1,062,474	-		GFF1057	0.26	-0.0
1,062,477	+		GFF1057	0.27	+0.0
1,062,477	+		GFF1057	0.27	-1.3
1,062,477	+		GFF1057	0.27	-1.7
1,062,477	+		GFF1057	0.27	-1.6
1,062,477	+		GFF1057	0.27	+0.1
1,062,477	+		GFF1057	0.27	-0.2
1,062,477	+		GFF1057	0.27	+0.3
1,062,482	+		GFF1057	0.27	-0.7
1,062,482	+		GFF1057	0.27	-1.3
1,062,485	-		GFF1057	0.28	-1.3
1,062,485	-		GFF1057	0.28	-1.0
1,062,485	-		GFF1057	0.28	-0.2
1,062,485	-		GFF1057	0.28	+0.3
1,062,485	-		GFF1057	0.28	+1.0
1,062,485	-		GFF1057	0.28	+0.4
1,062,485	-		GFF1057	0.28	+1.7
1,062,485	-		GFF1057	0.28	-0.9
1,062,485	-		GFF1057	0.28	-0.1
1,062,487	+		GFF1057	0.28	+1.3
1,062,487	+		GFF1057	0.28	-2.5
1,062,490	-		GFF1057	0.29	-0.2
1,062,490	-		GFF1057	0.29	-1.9
1,062,490	-		GFF1057	0.29	-1.9
1,062,495	-		GFF1057	0.29	-0.2
1,062,495	-		GFF1057	0.29	-1.9
1,062,496	+		GFF1057	0.29	-1.0
1,062,536	-		GFF1057	0.35	-1.3
1,062,565	+		GFF1057	0.39	-0.2
1,062,587	-		GFF1057	0.42	-2.1
1,062,609	-		GFF1057	0.46	-1.2
1,062,614	-		GFF1057	0.46	-0.3
1,062,672	+		GFF1057	0.55	+1.5
1,062,672	+		GFF1057	0.55	-1.5
1,062,672	+		GFF1057	0.55	-0.1
1,062,672	+		GFF1057	0.55	+0.5
1,062,672	+		GFF1057	0.55	-0.5
1,062,672	+		GFF1057	0.55	-1.3
1,062,672	+		GFF1057	0.55	-1.5
1,062,677	+		GFF1057	0.55	+0.5
1,062,680	-		GFF1057	0.56	+0.7
1,062,680	-		GFF1057	0.56	-1.6
1,062,680	-		GFF1057	0.56	+1.4
1,062,680	-		GFF1057	0.56	-0.7
1,062,680	-		GFF1057	0.56	+0.5
1,062,680	-		GFF1057	0.56	-0.3
1,062,680	-		GFF1057	0.56	-0.4
1,062,730	+		GFF1057	0.63	+0.5
1,062,730	+		GFF1057	0.63	-0.2
1,062,737	-		GFF1057	0.64	-1.2
1,062,738	-		GFF1057	0.64	+0.2
1,062,738	-		GFF1057	0.64	+0.1
1,062,738	-		GFF1057	0.64	-0.9
1,062,796	+		GFF1057	0.72	+1.4
1,062,805	+		GFF1057	0.74	+1.1
1,062,813	-		GFF1057	0.75	+0.5
1,062,825	-		GFF1057	0.77	-0.2
1,062,831	+		GFF1057	0.77	+0.6
1,062,832	+		GFF1057	0.78	+0.3
1,062,837	-		GFF1057	0.78	-1.3
1,062,844	+		GFF1057	0.79	-0.2
1,062,844	+		GFF1057	0.79	-2.2
1,062,887	+		GFF1057	0.85	-0.7
1,062,887	+		GFF1057	0.85	+0.3
1,062,887	+		GFF1057	0.85	-0.4
1,062,887	+		GFF1057	0.85	-0.1
1,062,894	-		GFF1057	0.86	-1.1
1,062,895	-		GFF1057	0.87	-1.7
1,062,895	-		GFF1057	0.87	+0.6
1,062,913	+		GFF1057	0.89	-0.3
1,062,937	-				+0.1
1,062,966	+				-2.3
1,062,973	+				+0.2
1,062,973	+				-0.6
1,062,973	+				-0.9
1,062,976	-				+0.0
1,062,976	-				-0.3
1,062,976	-				-1.2
1,062,981	-				-0.2
1,062,981	-				+0.3
1,062,981	-				+0.1
1,062,981	-				+0.3
1,062,981	-				+0.3
1,062,987	+				+0.9
1,062,987	+				-1.2
1,062,987	+				-0.4
1,062,992	+				-0.6
1,062,995	-				-1.6
1,063,000	-				+0.3
1,063,001	-				-0.4
1,063,062	+				+0.6
1,063,062	+				-0.6
1,063,062	+				+1.2
1,063,065	-				-1.2
1,063,067	+		GFF1058	0.10	-0.2
1,063,070	-		GFF1058	0.10	-1.1
1,063,070	-		GFF1058	0.10	-1.0
1,063,072	+		GFF1058	0.11	+0.8
1,063,072	+		GFF1058	0.11	-0.5
1,063,072	+		GFF1058	0.11	-1.4
1,063,072	+		GFF1058	0.11	+0.3
1,063,072	+		GFF1058	0.11	-0.9
1,063,075	-		GFF1058	0.11	-1.3
1,063,075	-		GFF1058	0.11	-1.0
1,063,080	+		GFF1058	0.12	-0.3
1,063,080	-		GFF1058	0.12	+0.3
1,063,080	-		GFF1058	0.12	+1.6
1,063,080	-		GFF1058	0.12	+0.0
1,063,080	-		GFF1058	0.12	+0.3
1,063,080	-		GFF1058	0.12	-1.9
1,063,123	+		GFF1058	0.17	-0.6
1,063,167	-		GFF1058	0.23	-1.7
1,063,178	-		GFF1058	0.24	+0.9
1,063,192	+		GFF1058	0.26	-1.6
1,063,201	-		GFF1058	0.27	+0.0
1,063,210	+		GFF1058	0.28	-0.2
1,063,241	+		GFF1058	0.32	-0.6
1,063,254	+		GFF1058	0.34	-0.3
1,063,254	-		GFF1058	0.34	-0.1
1,063,262	-		GFF1058	0.35	-0.4
1,063,262	-		GFF1058	0.35	+0.6
1,063,264	+		GFF1058	0.35	+0.3
1,063,264	+		GFF1058	0.35	-1.2
1,063,265	+		GFF1058	0.36	+1.1
1,063,265	+		GFF1058	0.36	+1.4
1,063,268	-		GFF1058	0.36	+0.8
1,063,268	-		GFF1058	0.36	-0.9
1,063,273	-		GFF1058	0.37	-0.3
1,063,273	-		GFF1058	0.37	-0.9
1,063,273	-		GFF1058	0.37	-0.1
1,063,311	-		GFF1058	0.41	-0.4
1,063,323	-		GFF1058	0.43	-0.4
1,063,333	-		GFF1058	0.44	-1.6
1,063,362	+		GFF1058	0.48	+0.1
1,063,362	+		GFF1058	0.48	-0.8
1,063,368	-		GFF1058	0.49	+0.8
1,063,370	-		GFF1058	0.49	+0.3
1,063,370	-		GFF1058	0.49	-0.7
1,063,370	-		GFF1058	0.49	+0.0
1,063,375	+		GFF1058	0.50	-2.0
1,063,376	+		GFF1058	0.50	-2.4
1,063,376	+		GFF1058	0.50	-1.0
1,063,376	+		GFF1058	0.50	-1.6
1,063,376	+		GFF1058	0.50	-1.0
1,063,376	+		GFF1058	0.50	+0.7
1,063,376	+		GFF1058	0.50	+0.4
1,063,376	+		GFF1058	0.50	-0.8
1,063,383	-		GFF1058	0.51	-1.9
1,063,384	-		GFF1058	0.51	-0.6
1,063,384	-		GFF1058	0.51	+0.7
1,063,384	-		GFF1058	0.51	-1.0
1,063,384	-		GFF1058	0.51	-1.4
1,063,384	-		GFF1058	0.51	-1.1
1,063,384	-		GFF1058	0.51	+0.9
1,063,384	-		GFF1058	0.51	-1.4
1,063,384	-		GFF1058	0.51	-0.4
1,063,397	+		GFF1058	0.53	-0.3
1,063,405	-		GFF1058	0.54	-1.8
1,063,424	-		GFF1058	0.56	-0.4
1,063,439	+		GFF1058	0.58	+0.0
1,063,448	+		GFF1058	0.59	-0.2
1,063,450	+		GFF1058	0.59	+0.2
1,063,450	+		GFF1058	0.59	-0.6
1,063,453	+		GFF1058	0.60	-0.3
1,063,456	-		GFF1058	0.60	-1.8
1,063,457	-		GFF1058	0.60	-0.3
1,063,457	-		GFF1058	0.60	+0.2
1,063,457	-		GFF1058	0.60	-0.1
1,063,457	-		GFF1058	0.60	-0.5
1,063,457	-		GFF1058	0.60	-0.4
1,063,457	-		GFF1058	0.60	+0.0
1,063,457	-		GFF1058	0.60	-0.1
1,063,457	-		GFF1058	0.60	-0.0
1,063,479	-		GFF1058	0.63	+0.9
1,063,482	+		GFF1058	0.63	-0.8
1,063,495	+		GFF1058	0.65	-0.1
1,063,495	+		GFF1058	0.65	-0.3
1,063,503	-		GFF1058	0.66	-0.4
1,063,508	+		GFF1058	0.67	+0.8
1,063,522	+		GFF1058	0.69	-2.5
1,063,543	+		GFF1058	0.71	+0.8
1,063,568	-		GFF1058	0.75	-1.6
1,063,568	-		GFF1058	0.75	-1.2
1,063,568	-		GFF1058	0.75	-2.1
1,063,614	-		GFF1058	0.80	-0.9
1,063,632	-		GFF1058	0.83	-0.2
1,063,650	-		GFF1058	0.85	-2.4
1,063,655	-		GFF1058	0.86	+0.6
1,063,680	-		GFF1058	0.89	-1.6
1,063,680	-		GFF1058	0.89	-2.1
1,063,680	-		GFF1058	0.89	+0.2
1,063,706	+				-0.7
1,063,745	-				+0.0
1,063,768	+				-2.1
1,063,808	+				-0.3
1,063,816	-				+0.2
1,063,816	-				-0.9
1,063,816	-				-0.7
1,063,818	+				+0.4
1,063,818	+				+0.9
1,063,826	-				+0.9
1,063,826	-				-0.6
1,063,828	+				-2.0
1,063,836	+				-0.6
1,063,841	+				-0.7
1,063,844	-				-1.2
1,063,853	+				-1.1
1,063,853	+				-1.6
1,063,857	-				+0.5
1,063,857	-				-0.3
1,063,861	-				-0.8
1,063,861	-				+0.2
1,063,861	-				+0.2
1,063,861	-				-0.9
1,063,861	-				-0.7
1,063,874	+				-0.1
1,063,915	-		GFF1059	0.11	+0.4
1,064,014	-		GFF1059	0.18	-2.6
1,064,034	-		GFF1059	0.19	-1.2
1,064,072	+		GFF1059	0.22	+0.6
1,064,073	-		GFF1059	0.22	-0.6
1,064,077	+		GFF1059	0.23	-0.1
1,064,123	-		GFF1059	0.26	+0.4
1,064,129	+		GFF1059	0.26	-0.0
1,064,129	+		GFF1059	0.26	-0.9
1,064,129	+		GFF1059	0.26	-0.5
1,064,137	-		GFF1059	0.27	-0.5
1,064,137	-		GFF1059	0.27	+0.4
1,064,160	+		GFF1059	0.29	-0.3
1,064,170	-		GFF1059	0.29	+0.6
1,064,188	+		GFF1059	0.31	-0.6
1,064,188	+		GFF1059	0.31	+0.7
1,064,227	-		GFF1059	0.34	-1.8
1,064,227	-		GFF1059	0.34	-1.4
1,064,243	+		GFF1059	0.35	-1.1
1,064,278	+		GFF1059	0.37	-0.3
1,064,292	+		GFF1059	0.39	+0.3
1,064,316	+		GFF1059	0.40	-0.6
1,064,324	-		GFF1059	0.41	+1.2
1,064,362	+		GFF1059	0.44	+0.7
1,064,382	-		GFF1059	0.45	-2.8
1,064,384	+		GFF1059	0.45	+0.8
1,064,384	+		GFF1059	0.45	-0.8
1,064,384	+		GFF1059	0.45	-0.3
1,064,384	+		GFF1059	0.45	+0.4
1,064,392	-		GFF1059	0.46	-1.0
1,064,392	-		GFF1059	0.46	-0.8
1,064,392	-		GFF1059	0.46	+0.1
1,064,402	+		GFF1059	0.47	-1.9
1,064,402	+		GFF1059	0.47	+0.0
1,064,402	+		GFF1059	0.47	-2.2
1,064,402	+		GFF1059	0.47	-0.3
1,064,420	-		GFF1059	0.48	-1.3
1,064,425	-		GFF1059	0.48	+0.2
1,064,431	-		GFF1059	0.49	-0.1
1,064,435	-		GFF1059	0.49	-1.2
1,064,435	-		GFF1059	0.49	-1.2
1,064,438	+		GFF1059	0.49	+0.1
1,064,443	+		GFF1059	0.50	+0.1
1,064,478	+		GFF1059	0.52	-0.7
1,064,486	-		GFF1059	0.53	-0.8
1,064,499	+		GFF1059	0.54	+0.2
1,064,499	+		GFF1059	0.54	-1.5
1,064,507	-		GFF1059	0.54	-1.2
1,064,507	-		GFF1059	0.54	-1.4
1,064,507	-		GFF1059	0.54	+0.5
1,064,573	+		GFF1059	0.59	+0.7
1,064,577	+		GFF1059	0.60	+0.3
1,064,577	+		GFF1059	0.60	+0.1
1,064,581	-		GFF1059	0.60	+0.7
1,064,585	-		GFF1059	0.60	+1.1
1,064,585	-		GFF1059	0.60	-0.1
1,064,591	-		GFF1059	0.61	+0.0
1,064,619	+		GFF1059	0.63	-0.8
1,064,619	+		GFF1059	0.63	-1.6
1,064,619	+		GFF1059	0.63	-1.3
1,064,635	+		GFF1059	0.64	-1.8
1,064,672	-		GFF1059	0.67	-1.6
1,064,697	+		GFF1059	0.69	-1.6
1,064,723	+		GFF1059	0.71	-2.0
1,064,736	-		GFF1059	0.71	-1.3
1,064,745	+		GFF1059	0.72	+0.1