Strain Fitness in Sphingobium sp. HT1-2 around GFF1034

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
1,034,936	-		GFF1033	0.53	-0.2
1,034,949	+		GFF1033	0.53	-1.3
1,034,957	-		GFF1033	0.54	+1.5
1,034,957	-		GFF1033	0.54	-2.0
1,034,968	-		GFF1033	0.54	-0.0
1,034,970	+		GFF1033	0.54	+0.3
1,034,979	-		GFF1033	0.55	-1.0
1,034,986	+		GFF1033	0.55	-1.7
1,034,988	-		GFF1033	0.55	-1.3
1,034,994	-		GFF1033	0.55	+0.3
1,034,994	-		GFF1033	0.55	+0.0
1,034,994	-		GFF1033	0.55	-0.0
1,034,994	-		GFF1033	0.55	+0.6
1,034,996	-		GFF1033	0.56	-1.1
1,034,998	-		GFF1033	0.56	+0.3
1,035,057	+		GFF1033	0.58	+0.8
1,035,067	+		GFF1033	0.59	+0.3
1,035,081	+		GFF1033	0.60	-2.1
1,035,081	+		GFF1033	0.60	-0.3
1,035,089	-		GFF1033	0.60	-1.5
1,035,089	-		GFF1033	0.60	-0.8
1,035,094	-		GFF1033	0.60	+0.1
1,035,104	+		GFF1033	0.61	-1.3
1,035,104	+		GFF1033	0.61	-1.5
1,035,104	+		GFF1033	0.61	+0.1
1,035,107	-		GFF1033	0.61	-0.1
1,035,114	+		GFF1033	0.61	+0.0
1,035,121	-		GFF1033	0.61	+0.6
1,035,123	+		GFF1033	0.62	-0.4
1,035,123	+		GFF1033	0.62	-0.0
1,035,131	-		GFF1033	0.62	+1.3
1,035,131	-		GFF1033	0.62	+0.4
1,035,148	-		GFF1033	0.63	-1.7
1,035,150	+		GFF1033	0.63	-0.3
1,035,150	+		GFF1033	0.63	+0.1
1,035,158	-		GFF1033	0.63	-0.2
1,035,169	+		GFF1033	0.64	+0.1
1,035,200	+		GFF1033	0.65	-0.8
1,035,211	+		GFF1033	0.66	+0.2
1,035,211	+		GFF1033	0.66	-0.6
1,035,214	-		GFF1033	0.66	+0.1
1,035,214	-		GFF1033	0.66	-1.3
1,035,219	-		GFF1033	0.66	-1.7
1,035,219	-		GFF1033	0.66	-0.1
1,035,230	+		GFF1033	0.67	+0.8
1,035,238	-		GFF1033	0.67	-1.3
1,035,238	-		GFF1033	0.67	+0.9
1,035,238	-		GFF1033	0.67	-1.4
1,035,238	-		GFF1033	0.67	+0.6
1,035,265	+		GFF1033	0.68	-0.1
1,035,273	-		GFF1033	0.69	+1.1
1,035,273	-		GFF1033	0.69	-1.0
1,035,282	-		GFF1033	0.69	-1.2
1,035,288	-		GFF1033	0.69	-0.5
1,035,291	+		GFF1033	0.70	-0.4
1,035,291	+		GFF1033	0.70	+0.0
1,035,291	+		GFF1033	0.70	-0.5
1,035,296	+		GFF1033	0.70	-0.5
1,035,299	-		GFF1033	0.70	-0.1
1,035,299	-		GFF1033	0.70	+0.8
1,035,301	+		GFF1033	0.70	+0.7
1,035,332	+		GFF1033	0.71	-0.0
1,035,381	-		GFF1033	0.74	-1.5
1,035,381	-		GFF1033	0.74	-0.9
1,035,383	-		GFF1033	0.74	+0.1
1,035,383	-		GFF1033	0.74	-1.4
1,035,390	+		GFF1033	0.74	-0.2
1,035,403	-		GFF1033	0.75	+0.9
1,035,406	+		GFF1033	0.75	-1.6
1,035,412	+		GFF1033	0.75	-1.0
1,035,412	-		GFF1033	0.75	-1.2
1,035,414	-		GFF1033	0.75	-0.1
1,035,414	-		GFF1033	0.75	+0.1
1,035,433	+		GFF1033	0.76	+1.2
1,035,433	+		GFF1033	0.76	-1.2
1,035,438	+		GFF1033	0.76	-0.1
1,035,441	-		GFF1033	0.77	-1.0
1,035,441	-		GFF1033	0.77	-1.2
1,035,446	-		GFF1033	0.77	-1.8
1,035,455	+		GFF1033	0.77	-2.1
1,035,475	+		GFF1033	0.78	+0.9
1,035,498	+		GFF1033	0.79	-0.1
1,035,498	+		GFF1033	0.79	+0.7
1,035,506	-		GFF1033	0.80	-1.0
1,035,506	-		GFF1033	0.80	+0.0
1,035,517	+		GFF1033	0.80	-0.3
1,035,517	+		GFF1033	0.80	+1.5
1,035,517	+		GFF1033	0.80	+0.1
1,035,525	-		GFF1033	0.81	-1.7
1,035,525	-		GFF1033	0.81	-0.6
1,035,525	-		GFF1033	0.81	-0.7
1,035,525	-		GFF1033	0.81	+0.8
1,035,536	-		GFF1033	0.81	-0.7
1,035,587	-		GFF1033	0.84	-0.7
1,035,594	+		GFF1033	0.84	-0.6
1,035,601	+		GFF1033	0.84	-1.4
1,035,627	+		GFF1033	0.85	-0.2
1,035,635	-		GFF1033	0.86	-1.2
1,035,651	+		GFF1033	0.87	+0.7
1,035,652	+		GFF1033	0.87	-0.1
1,035,652	+		GFF1033	0.87	-0.2
1,035,652	+		GFF1033	0.87	+0.2
1,035,652	+		GFF1033	0.87	+0.5
1,035,652	+		GFF1033	0.87	-1.4
1,035,652	+		GFF1033	0.87	-0.2
1,035,652	+		GFF1033	0.87	-2.0
1,035,652	+		GFF1033	0.87	-1.0
1,035,652	+		GFF1033	0.87	+0.7
1,035,660	-		GFF1033	0.87	-0.6
1,035,660	-		GFF1033	0.87	-0.5
1,035,660	-		GFF1033	0.87	+1.1
1,035,660	-		GFF1033	0.87	-0.5
1,035,660	-		GFF1033	0.87	-1.3
1,035,660	-		GFF1033	0.87	-0.9
1,035,660	-		GFF1033	0.87	+0.4
1,035,660	-		GFF1033	0.87	+0.8
1,035,660	-		GFF1033	0.87	+0.1
1,035,660	-		GFF1033	0.87	+1.4
1,035,660	-		GFF1033	0.87	-1.7
1,035,666	-		GFF1033	0.87	-1.2
1,035,720	+		GFF1033	0.90	-0.6
1,035,761	+				-0.6
1,035,787	+				-0.7
1,035,797	+				-0.1
1,035,797	+				-0.6
1,035,810	+				-1.8
1,035,811	+				-0.7
1,035,811	+				+0.0
1,035,816	+				-1.1
1,035,816	+				-0.6
1,035,816	+				-0.3
1,035,821	+				+1.5
1,035,824	-				-0.6
1,035,824	-				-1.6
1,035,824	-				+0.5
1,035,824	-				-1.8
1,035,831	-				-0.4
1,035,877	-				-0.9
1,035,950	+				+0.1
1,035,950	+				-0.5
1,035,950	+				+0.7
1,035,958	-				-1.1
1,035,958	-				+1.3
1,035,958	-				+0.3
1,035,958	-				-2.0
1,035,958	-				-0.3
1,035,993	+		GFF1034	0.14	+0.3
1,036,015	+		GFF1034	0.19	+0.6
1,036,015	+		GFF1034	0.19	+0.1
1,036,015	+		GFF1034	0.19	+1.0
1,036,015	+		GFF1034	0.19	+0.9
1,036,015	+		GFF1034	0.19	-2.1
1,036,015	+		GFF1034	0.19	-0.7
1,036,015	-		GFF1034	0.19	-0.6
1,036,023	-		GFF1034	0.21	-0.3
1,036,023	-		GFF1034	0.21	-1.1
1,036,023	-		GFF1034	0.21	+0.7
1,036,023	-		GFF1034	0.21	-0.1
1,036,023	-		GFF1034	0.21	+1.0
1,036,023	-		GFF1034	0.21	+1.1
1,036,028	-		GFF1034	0.22	-0.3
1,036,039	+		GFF1034	0.24	+0.7
1,036,047	-		GFF1034	0.26	+1.2
1,036,060	+		GFF1034	0.29	+0.1
1,036,089	-		GFF1034	0.35	-0.2
1,036,095	-		GFF1034	0.37	-1.2
1,036,099	-		GFF1034	0.38	+1.0
1,036,120	+		GFF1034	0.42	+1.4
1,036,132	+		GFF1034	0.45	+0.1
1,036,132	+		GFF1034	0.45	-1.0
1,036,136	+		GFF1034	0.46	+0.4
1,036,140	-		GFF1034	0.47	-0.6
1,036,142	+		GFF1034	0.47	+0.7
1,036,158	-		GFF1034	0.51	-0.4
1,036,168	+		GFF1034	0.53	-1.7
1,036,176	-		GFF1034	0.55	-1.2
1,036,176	-		GFF1034	0.55	-0.2
1,036,185	-		GFF1034	0.57	-1.2
1,036,189	+		GFF1034	0.58	-1.1
1,036,190	-		GFF1034	0.58	-0.7
1,036,194	+		GFF1034	0.59	+0.6
1,036,195	-		GFF1034	0.59	-2.0
1,036,195	-		GFF1034	0.59	-1.6
1,036,197	-		GFF1034	0.59	-1.6
1,036,201	+		GFF1034	0.60	-1.3
1,036,211	+		GFF1034	0.62	-0.2
1,036,234	-		GFF1034	0.68	-0.5
1,036,234	-		GFF1034	0.68	-0.7
1,036,236	-		GFF1034	0.68	+0.4
1,036,246	+		GFF1034	0.70	+0.9
1,036,254	-		GFF1034	0.72	+0.1
1,036,270	+		GFF1034	0.76	+0.7
1,036,278	-		GFF1034	0.77	-0.2
1,036,295	+		GFF1034	0.81	-0.4
1,036,303	-		GFF1034	0.83	+0.1
1,036,315	+		GFF1034	0.86	+1.3
1,036,323	-		GFF1034	0.87	-0.6
1,036,323	-		GFF1034	0.87	-0.2
1,036,323	-		GFF1034	0.87	-1.3
1,036,323	-		GFF1034	0.87	-0.3
1,036,323	-		GFF1034	0.87	+1.7
1,036,323	-		GFF1034	0.87	-0.8
1,036,323	-		GFF1034	0.87	+0.2
1,036,372	-				-1.1
1,036,455	+				-0.1
1,036,468	-				+0.9
1,036,501	-				+0.1
1,036,508	+				-0.6
1,036,515	+		GFF1035	0.10	+0.1
1,036,523	-		GFF1035	0.13	+1.3
1,036,523	-		GFF1035	0.13	+1.3
1,036,529	+		GFF1035	0.15	+0.8
1,036,539	+		GFF1035	0.18	-0.5
1,036,542	-		GFF1035	0.19	+1.2
1,036,557	-		GFF1035	0.24	-1.3
1,036,572	+		GFF1035	0.29	+0.6
1,036,576	+		GFF1035	0.30	+0.3
1,036,577	+		GFF1035	0.31	-0.8
1,036,585	-		GFF1035	0.33	+0.9
1,036,585	-		GFF1035	0.33	+0.1
1,036,591	+		GFF1035	0.35	+0.5
1,036,599	-		GFF1035	0.38	-0.6
1,036,661	-		GFF1035	0.58	+0.7
1,036,704	+		GFF1035	0.73	+0.5
1,036,704	+		GFF1035	0.73	+0.1
1,036,712	-		GFF1035	0.75	-0.2
1,036,722	+		GFF1035	0.79	-0.6
1,036,735	+		GFF1035	0.83	-1.4
1,036,739	-		GFF1035	0.84	-0.6
1,036,744	-		GFF1035	0.86	-1.7
1,036,745	+		GFF1035	0.86	+0.3
1,036,753	-		GFF1035	0.89	-1.3
1,036,754	-		GFF1035	0.89	+0.7
1,036,754	-		GFF1035	0.89	-1.6
1,036,758	+				+1.8
1,036,760	+				-0.4
1,036,767	+				-1.5
1,036,768	-				-0.3
1,036,802	+				+0.3
1,036,837	-				+0.4
1,036,857	+				+0.1
1,036,865	-				-0.1
1,036,892	+				+0.9
1,036,897	+				-1.4
1,036,900	-				+0.7
1,036,900	-				-0.1
1,036,900	-				+0.2
1,036,905	+				-0.4
1,036,905	-				-0.1
1,036,910	+				-0.4
1,036,918	-				+1.4
1,036,918	-				+0.1
1,036,947	-				+0.3
1,036,967	+				-0.7
1,036,975	-				+0.7
1,036,977	+				-0.6
1,036,977	+				-0.3
1,036,982	+				-0.7
1,036,985	-				-0.2
1,036,990	-				-0.9
1,036,991	+				+0.3
1,036,995	-				+0.1
1,037,027	+				-0.7
1,037,030	-				-1.8
1,037,035	-				-0.9
1,037,035	-				+0.1
1,037,037	+				+1.2
1,037,037	+				-0.3
1,037,045	-				-0.5
1,037,045	-				-0.3
1,037,048	+				-1.3
1,037,056	-				-0.1
1,037,082	-				+1.3
1,037,082	-				-1.2
1,037,092	-				-1.9
1,037,099	+		GFF1036	0.10	+0.1
1,037,110	+		GFF1036	0.10	-0.3
1,037,111	+		GFF1036	0.10	-1.2
1,037,119	-		GFF1036	0.11	+0.3
1,037,119	-		GFF1036	0.11	+0.9
1,037,130	+		GFF1036	0.11	-2.1
1,037,164	-		GFF1036	0.12	-0.7
1,037,182	+		GFF1036	0.13	-1.7
1,037,190	-		GFF1036	0.13	+0.7
1,037,191	-		GFF1036	0.13	+0.1
1,037,195	+		GFF1036	0.13	-0.6
1,037,195	+		GFF1036	0.13	-0.4
1,037,195	-		GFF1036	0.13	-0.4
1,037,203	-		GFF1036	0.14	-2.4
1,037,203	-		GFF1036	0.14	+0.3
1,037,203	-		GFF1036	0.14	-1.8
1,037,223	-		GFF1036	0.14	+1.3
1,037,255	+		GFF1036	0.15	-1.6
1,037,262	+		GFF1036	0.16	+0.3
1,037,263	-		GFF1036	0.16	+0.2
1,037,263	-		GFF1036	0.16	+0.1
1,037,263	-		GFF1036	0.16	+0.3
1,037,263	-		GFF1036	0.16	+0.2
1,037,277	+		GFF1036	0.16	-1.4
1,037,277	+		GFF1036	0.16	-1.0
1,037,277	+		GFF1036	0.16	+2.1
1,037,277	+		GFF1036	0.16	-1.0
1,037,277	+		GFF1036	0.16	-2.1
1,037,285	-		GFF1036	0.16	-0.2
1,037,285	-		GFF1036	0.16	+0.2
1,037,285	-		GFF1036	0.16	+0.8
1,037,289	+		GFF1036	0.17	+1.0
1,037,290	+		GFF1036	0.17	-1.5
1,037,290	+		GFF1036	0.17	-0.0
1,037,295	+		GFF1036	0.17	+0.3
1,037,297	-		GFF1036	0.17	-0.5
1,037,297	-		GFF1036	0.17	+0.5
1,037,297	-		GFF1036	0.17	+1.1
1,037,297	-		GFF1036	0.17	-0.4
1,037,298	-		GFF1036	0.17	-0.1
1,037,308	+		GFF1036	0.17	-1.4
1,037,308	+		GFF1036	0.17	+0.9
1,037,308	+		GFF1036	0.17	-1.4
1,037,308	+		GFF1036	0.17	-1.2
1,037,328	+		GFF1036	0.18	+0.4
1,037,329	+		GFF1036	0.18	+0.3
1,037,329	+		GFF1036	0.18	+0.7
1,037,329	+		GFF1036	0.18	-0.1
1,037,335	-		GFF1036	0.18	+0.5
1,037,337	-		GFF1036	0.18	-0.3
1,037,342	-		GFF1036	0.18	-0.6
1,037,351	+		GFF1036	0.19	-0.1
1,037,351	+		GFF1036	0.19	+0.6
1,037,359	-		GFF1036	0.19	+1.0