Strain Fitness in Sphingobium sp. HT1-2 around GFF961

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF960 and GFF961 are separated by 118 nucleotidesGFF961 and GFF962 are separated by 33 nucleotides GFF960 - Acetyl-CoA synthetase (EC 6.2.1.1), at 961,016 to 962,959 GFF960 GFF961 - Cytochrome b561, at 963,078 to 963,590 GFF961 GFF962 - 2-polyprenyl-6-methoxyphenol hydroxylase; 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase, at 963,624 to 964,832 GFF962 Position (kb) 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 962.101 kb on + strand, within GFF960at 962.101 kb on + strand, within GFF960at 962.101 kb on + strand, within GFF960at 962.108 kb on - strand, within GFF960at 962.108 kb on - strand, within GFF960at 962.109 kb on - strand, within GFF960at 962.109 kb on - strand, within GFF960at 962.109 kb on - strand, within GFF960at 962.110 kb on - strand, within GFF960at 962.111 kb on + strand, within GFF960at 962.119 kb on - strand, within GFF960at 962.120 kb on - strand, within GFF960at 962.166 kb on - strand, within GFF960at 962.166 kb on - strand, within GFF960at 962.197 kb on - strand, within GFF960at 962.197 kb on - strand, within GFF960at 962.202 kb on + strand, within GFF960at 962.242 kb on - strand, within GFF960at 962.242 kb on - strand, within GFF960at 962.252 kb on - strand, within GFF960at 962.252 kb on - strand, within GFF960at 962.252 kb on - strand, within GFF960at 962.348 kb on - strand, within GFF960at 962.367 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.372 kb on + strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.380 kb on - strand, within GFF960at 962.421 kb on - strand, within GFF960at 962.423 kb on + strand, within GFF960at 962.423 kb on + strand, within GFF960at 962.423 kb on + strand, within GFF960at 962.426 kb on - strand, within GFF960at 962.431 kb on - strand, within GFF960at 962.431 kb on - strand, within GFF960at 962.437 kb on + strand, within GFF960at 962.438 kb on + strand, within GFF960at 962.438 kb on + strand, within GFF960at 962.438 kb on + strand, within GFF960at 962.446 kb on - strand, within GFF960at 962.446 kb on - strand, within GFF960at 962.446 kb on - strand, within GFF960at 962.448 kb on + strand, within GFF960at 962.462 kb on + strand, within GFF960at 962.499 kb on + strand, within GFF960at 962.533 kb on - strand, within GFF960at 962.602 kb on + strand, within GFF960at 962.602 kb on + strand, within GFF960at 962.602 kb on + strand, within GFF960at 962.602 kb on + strand, within GFF960at 962.603 kb on + strand, within GFF960at 962.623 kb on + strand, within GFF960at 962.674 kb on + strand, within GFF960at 962.675 kb on - strand, within GFF960at 962.676 kb on - strand, within GFF960at 962.676 kb on - strand, within GFF960at 962.684 kb on + strand, within GFF960at 962.692 kb on - strand, within GFF960at 962.694 kb on + strand, within GFF960at 962.694 kb on + strand, within GFF960at 962.724 kb on + strand, within GFF960at 962.727 kb on - strand, within GFF960at 962.741 kb on + strand, within GFF960at 962.746 kb on + strand, within GFF960at 962.746 kb on + strand, within GFF960at 962.754 kb on - strand, within GFF960at 962.754 kb on - strand, within GFF960at 962.769 kb on - strandat 962.774 kb on - strandat 962.784 kb on + strandat 962.798 kb on - strandat 962.799 kb on + strandat 962.815 kb on + strandat 962.815 kb on + strandat 962.823 kb on - strandat 962.823 kb on - strandat 962.825 kb on + strandat 962.837 kb on + strandat 962.844 kb on + strandat 962.867 kb on - strandat 962.878 kb on - strandat 962.888 kb on + strandat 962.891 kb on + strandat 962.899 kb on + strandat 962.899 kb on + strandat 962.899 kb on + strandat 962.899 kb on + strandat 962.901 kb on + strandat 962.901 kb on + strandat 962.907 kb on - strandat 962.907 kb on - strandat 962.907 kb on - strandat 962.929 kb on + strandat 962.932 kb on - strandat 962.932 kb on - strandat 962.932 kb on - strandat 962.932 kb on - strandat 962.964 kb on - strandat 962.993 kb on + strandat 963.001 kb on - strandat 963.001 kb on - strandat 963.001 kb on - strandat 963.010 kb on + strandat 963.018 kb on - strandat 963.018 kb on - strandat 963.024 kb on + strandat 963.045 kb on + strandat 963.045 kb on + strandat 963.050 kb on + strandat 963.050 kb on + strandat 963.053 kb on - strandat 963.057 kb on - strandat 963.074 kb on + strandat 963.074 kb on + strandat 963.074 kb on + strandat 963.074 kb on + strandat 963.077 kb on - strandat 963.082 kb on - strandat 963.083 kb on + strandat 963.094 kb on - strandat 963.094 kb on - strandat 963.123 kb on - strandat 963.126 kb on + strandat 963.144 kb on - strand, within GFF961at 963.159 kb on + strand, within GFF961at 963.167 kb on - strand, within GFF961at 963.167 kb on - strand, within GFF961at 963.213 kb on + strand, within GFF961at 963.221 kb on - strand, within GFF961at 963.222 kb on - strand, within GFF961at 963.281 kb on + strand, within GFF961at 963.291 kb on + strand, within GFF961at 963.291 kb on + strand, within GFF961at 963.299 kb on - strand, within GFF961at 963.301 kb on + strand, within GFF961at 963.309 kb on - strand, within GFF961at 963.323 kb on + strand, within GFF961at 963.335 kb on + strand, within GFF961at 963.343 kb on + strand, within GFF961at 963.351 kb on - strand, within GFF961at 963.356 kb on - strand, within GFF961at 963.370 kb on + strand, within GFF961at 963.407 kb on - strand, within GFF961at 963.407 kb on - strand, within GFF961at 963.409 kb on + strand, within GFF961at 963.443 kb on + strand, within GFF961at 963.443 kb on + strand, within GFF961at 963.443 kb on + strand, within GFF961at 963.444 kb on + strand, within GFF961at 963.449 kb on + strand, within GFF961at 963.451 kb on - strand, within GFF961at 963.451 kb on - strand, within GFF961at 963.451 kb on - strand, within GFF961at 963.452 kb on - strand, within GFF961at 963.461 kb on + strand, within GFF961at 963.469 kb on - strand, within GFF961at 963.487 kb on + strand, within GFF961at 963.491 kb on + strand, within GFF961at 963.494 kb on - strand, within GFF961at 963.498 kb on + strand, within GFF961at 963.508 kb on - strand, within GFF961at 963.527 kb on + strand, within GFF961at 963.593 kb on + strandat 963.593 kb on + strandat 963.604 kb on + strandat 963.610 kb on - strandat 963.621 kb on + strandat 963.621 kb on + strandat 963.621 kb on + strandat 963.621 kb on + strandat 963.621 kb on + strandat 963.621 kb on + strandat 963.629 kb on - strandat 963.629 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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962,101 + GFF960 0.56 +1.6
962,101 + GFF960 0.56 +0.4
962,101 + GFF960 0.56 -0.1
962,108 - GFF960 0.56 +0.2
962,108 - GFF960 0.56 -0.1
962,109 - GFF960 0.56 -0.1
962,109 - GFF960 0.56 -1.1
962,109 - GFF960 0.56 -0.4
962,110 - GFF960 0.56 -0.1
962,111 + GFF960 0.56 +0.8
962,119 - GFF960 0.57 -1.6
962,120 - GFF960 0.57 +0.4
962,166 - GFF960 0.59 -0.1
962,166 - GFF960 0.59 +0.3
962,197 - GFF960 0.61 -0.7
962,197 - GFF960 0.61 +0.8
962,202 + GFF960 0.61 -0.9
962,242 - GFF960 0.63 +0.6
962,242 - GFF960 0.63 -1.9
962,252 - GFF960 0.64 -0.0
962,252 - GFF960 0.64 +0.8
962,252 - GFF960 0.64 -1.3
962,348 - GFF960 0.69 -0.7
962,367 + GFF960 0.69 -0.5
962,372 + GFF960 0.70 -1.0
962,372 + GFF960 0.70 -0.7
962,372 + GFF960 0.70 -0.6
962,372 + GFF960 0.70 +0.7
962,372 + GFF960 0.70 +0.0
962,372 + GFF960 0.70 -1.4
962,372 + GFF960 0.70 +1.0
962,372 + GFF960 0.70 -0.4
962,372 + GFF960 0.70 -0.5
962,372 + GFF960 0.70 +0.1
962,372 + GFF960 0.70 +0.9
962,372 + GFF960 0.70 +1.8
962,372 + GFF960 0.70 -0.3
962,380 - GFF960 0.70 +0.2
962,380 - GFF960 0.70 -0.4
962,380 - GFF960 0.70 -0.4
962,380 - GFF960 0.70 +0.1
962,380 - GFF960 0.70 -0.1
962,380 - GFF960 0.70 -1.7
962,380 - GFF960 0.70 +1.1
962,380 - GFF960 0.70 +0.1
962,380 - GFF960 0.70 -0.6
962,380 - GFF960 0.70 -1.1
962,380 - GFF960 0.70 -0.2
962,380 - GFF960 0.70 +1.1
962,421 - GFF960 0.72 +0.4
962,423 + GFF960 0.72 -2.0
962,423 + GFF960 0.72 -0.0
962,423 + GFF960 0.72 +0.1
962,426 - GFF960 0.73 -1.0
962,431 - GFF960 0.73 +0.6
962,431 - GFF960 0.73 +0.5
962,437 + GFF960 0.73 +0.1
962,438 + GFF960 0.73 -0.8
962,438 + GFF960 0.73 +1.5
962,438 + GFF960 0.73 -0.0
962,446 - GFF960 0.74 +0.1
962,446 - GFF960 0.74 -0.2
962,446 - GFF960 0.74 -0.7
962,448 + GFF960 0.74 -0.1
962,462 + GFF960 0.74 +0.0
962,499 + GFF960 0.76 +0.9
962,533 - GFF960 0.78 -0.9
962,602 + GFF960 0.82 -0.4
962,602 + GFF960 0.82 -0.8
962,602 + GFF960 0.82 -0.2
962,602 + GFF960 0.82 -1.3
962,603 + GFF960 0.82 -0.1
962,623 + GFF960 0.83 -0.1
962,674 + GFF960 0.85 -1.5
962,675 - GFF960 0.85 +0.4
962,676 - GFF960 0.85 -1.0
962,676 - GFF960 0.85 -0.8
962,684 + GFF960 0.86 +1.3
962,692 - GFF960 0.86 +0.4
962,694 + GFF960 0.86 +0.5
962,694 + GFF960 0.86 +0.0
962,724 + GFF960 0.88 -0.2
962,727 - GFF960 0.88 +1.4
962,741 + GFF960 0.89 -2.0
962,746 + GFF960 0.89 +0.3
962,746 + GFF960 0.89 +0.2
962,754 - GFF960 0.89 -1.1
962,754 - GFF960 0.89 +0.8
962,769 - -0.7
962,774 - +0.3
962,784 + +1.3
962,798 - -0.2
962,799 + -0.4
962,815 + -0.7
962,815 + -0.2
962,823 - +1.0
962,823 - -1.7
962,825 + -0.5
962,837 + -0.1
962,844 + -2.8
962,867 - +0.5
962,878 - -2.0
962,888 + -0.3
962,891 + +1.4
962,899 + +0.9
962,899 + -1.8
962,899 + +2.0
962,899 + -2.4
962,901 + -1.0
962,901 + -1.6
962,907 - -0.2
962,907 - +0.0
962,907 - -1.6
962,929 + -0.9
962,932 - +0.5
962,932 - +0.4
962,932 - -1.5
962,932 - +0.1
962,964 - -2.1
962,993 + +0.6
963,001 - +0.8
963,001 - +0.2
963,001 - +0.3
963,010 + -0.5
963,018 - -0.4
963,018 - +0.6
963,024 + -0.7
963,045 + -2.4
963,045 + -0.7
963,050 + -1.2
963,050 + -0.7
963,053 - -2.0
963,057 - -1.4
963,074 + -0.2
963,074 + -0.2
963,074 + -0.3
963,074 + -0.7
963,077 - +0.5
963,082 - -1.3
963,083 + -0.2
963,094 - +1.2
963,094 - -2.6
963,123 - -0.3
963,126 + +0.3
963,144 - GFF961 0.13 -0.3
963,159 + GFF961 0.16 -1.8
963,167 - GFF961 0.17 -0.5
963,167 - GFF961 0.17 -0.2
963,213 + GFF961 0.26 -0.5
963,221 - GFF961 0.28 -0.2
963,222 - GFF961 0.28 -1.3
963,281 + GFF961 0.40 -1.0
963,291 + GFF961 0.42 -0.8
963,291 + GFF961 0.42 -0.6
963,299 - GFF961 0.43 -0.2
963,301 + GFF961 0.43 -1.0
963,309 - GFF961 0.45 -0.1
963,323 + GFF961 0.48 +0.2
963,335 + GFF961 0.50 +1.1
963,343 + GFF961 0.52 -0.6
963,351 - GFF961 0.53 +0.9
963,356 - GFF961 0.54 -0.4
963,370 + GFF961 0.57 -0.3
963,407 - GFF961 0.64 +1.1
963,407 - GFF961 0.64 -0.2
963,409 + GFF961 0.65 -0.4
963,443 + GFF961 0.71 -0.9
963,443 + GFF961 0.71 -0.4
963,443 + GFF961 0.71 +0.7
963,444 + GFF961 0.71 -0.1
963,449 + GFF961 0.72 -2.1
963,451 - GFF961 0.73 +0.5
963,451 - GFF961 0.73 -1.6
963,451 - GFF961 0.73 -0.1
963,452 - GFF961 0.73 -0.5
963,461 + GFF961 0.75 +0.8
963,469 - GFF961 0.76 -1.9
963,487 + GFF961 0.80 -1.0
963,491 + GFF961 0.81 -0.7
963,494 - GFF961 0.81 -0.6
963,498 + GFF961 0.82 -1.8
963,508 - GFF961 0.84 -0.1
963,527 + GFF961 0.88 -0.6
963,593 + -1.0
963,593 + -0.2
963,604 + -0.0
963,610 - +0.5
963,621 + +0.1
963,621 + -0.9
963,621 + +0.9
963,621 + -1.5
963,621 + -0.2
963,621 + +0.1
963,629 - +0.8
963,629 - +1.0

Or see this region's nucleotide sequence