Strain Fitness in Sphingobium sp. HT1-2 around GFF951

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF949 and GFF950 are separated by 21 nucleotidesGFF950 and GFF951 are separated by 5 nucleotidesGFF951 and GFF952 are separated by 26 nucleotides GFF949 - hypothetical protein, at 949,607 to 950,734 GFF949 GFF950 - hypothetical protein, at 950,756 to 951,049 GFF950 GFF951 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 951,055 to 951,882 GFF951 GFF952 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 951,909 to 953,174 GFF952 Position (kb) 951 952Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 950.059 kb on - strand, within GFF949at 950.082 kb on + strand, within GFF949at 950.083 kb on + strand, within GFF949at 950.090 kb on - strand, within GFF949at 950.126 kb on - strand, within GFF949at 950.145 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.193 kb on - strand, within GFF949at 950.204 kb on - strand, within GFF949at 950.225 kb on - strand, within GFF949at 950.249 kb on + strand, within GFF949at 950.268 kb on + strand, within GFF949at 950.276 kb on - strand, within GFF949at 950.276 kb on - strand, within GFF949at 950.276 kb on - strand, within GFF949at 950.286 kb on + strand, within GFF949at 950.319 kb on + strand, within GFF949at 950.325 kb on - strand, within GFF949at 950.432 kb on + strand, within GFF949at 950.450 kb on - strand, within GFF949at 950.455 kb on - strand, within GFF949at 950.455 kb on - strand, within GFF949at 950.478 kb on - strand, within GFF949at 950.479 kb on - strand, within GFF949at 950.486 kb on + strand, within GFF949at 950.501 kb on + strand, within GFF949at 950.506 kb on + strand, within GFF949at 950.529 kb on - strand, within GFF949at 950.547 kb on + strand, within GFF949at 950.565 kb on + strand, within GFF949at 950.595 kb on - strand, within GFF949at 950.601 kb on + strand, within GFF949at 950.609 kb on + strand, within GFF949at 950.609 kb on - strand, within GFF949at 950.632 kb on - strandat 950.632 kb on - strandat 950.634 kb on + strandat 950.634 kb on + strandat 950.634 kb on + strandat 950.634 kb on + strandat 950.636 kb on + strandat 950.642 kb on - strandat 950.644 kb on - strandat 950.655 kb on + strandat 950.655 kb on + strandat 950.663 kb on - strandat 950.697 kb on - strandat 950.697 kb on - strandat 950.697 kb on - strandat 950.697 kb on - strandat 950.703 kb on + strandat 950.704 kb on + strandat 950.713 kb on - strandat 950.726 kb on + strandat 950.744 kb on - strandat 950.744 kb on - strandat 950.755 kb on - strandat 950.914 kb on + strand, within GFF950at 950.922 kb on - strand, within GFF950at 950.922 kb on - strand, within GFF950at 950.938 kb on + strand, within GFF950at 950.961 kb on + strand, within GFF950at 950.961 kb on + strand, within GFF950at 950.961 kb on + strand, within GFF950at 950.961 kb on + strand, within GFF950at 950.968 kb on - strand, within GFF950at 950.995 kb on - strand, within GFF950at 950.999 kb on + strand, within GFF950at 951.007 kb on - strand, within GFF950at 951.040 kb on + strandat 951.048 kb on - strandat 951.053 kb on - strandat 951.059 kb on - strandat 951.072 kb on + strandat 951.078 kb on + strandat 951.160 kb on - strand, within GFF951at 951.160 kb on - strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.162 kb on + strand, within GFF951at 951.165 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.170 kb on - strand, within GFF951at 951.210 kb on - strand, within GFF951at 951.260 kb on - strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.316 kb on + strand, within GFF951at 951.319 kb on - strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.321 kb on + strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.324 kb on - strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.326 kb on + strand, within GFF951at 951.329 kb on - strand, within GFF951at 951.334 kb on - strand, within GFF951at 951.334 kb on - strand, within GFF951at 951.334 kb on - strand, within GFF951at 951.350 kb on + strand, within GFF951at 951.350 kb on + strand, within GFF951at 951.360 kb on + strand, within GFF951at 951.368 kb on - strand, within GFF951at 951.368 kb on - strand, within GFF951at 951.368 kb on - strand, within GFF951at 951.396 kb on + strand, within GFF951at 951.411 kb on - strand, within GFF951at 951.442 kb on + strand, within GFF951at 951.445 kb on - strand, within GFF951at 951.452 kb on + strand, within GFF951at 951.475 kb on + strand, within GFF951at 951.480 kb on + strand, within GFF951at 951.483 kb on - strand, within GFF951at 951.561 kb on - strand, within GFF951at 951.578 kb on + strand, within GFF951at 951.578 kb on + strand, within GFF951at 951.578 kb on + strand, within GFF951at 951.596 kb on - strand, within GFF951at 951.640 kb on - strand, within GFF951at 951.642 kb on + strand, within GFF951at 951.681 kb on + strand, within GFF951at 951.682 kb on + strand, within GFF951at 951.707 kb on + strand, within GFF951at 951.715 kb on - strand, within GFF951at 951.715 kb on - strand, within GFF951at 951.731 kb on + strand, within GFF951at 951.737 kb on - strand, within GFF951at 951.761 kb on + strand, within GFF951at 951.835 kb on - strandat 951.849 kb on + strandat 951.849 kb on + strandat 951.876 kb on + strandat 951.876 kb on - strandat 951.876 kb on - strandat 951.877 kb on + strandat 951.877 kb on + strandat 951.877 kb on + strandat 951.877 kb on + strandat 951.877 kb on + strandat 951.878 kb on - strandat 951.883 kb on + strandat 951.883 kb on + strandat 951.883 kb on - strandat 951.891 kb on - strandat 951.915 kb on - strandat 951.921 kb on - strandat 951.931 kb on - strandat 951.962 kb on - strandat 951.970 kb on - strandat 952.003 kb on - strandat 952.029 kb on + strandat 952.052 kb on + strand, within GFF952at 952.060 kb on - strand, within GFF952at 952.060 kb on - strand, within GFF952at 952.065 kb on + strand, within GFF952at 952.083 kb on + strand, within GFF952at 952.083 kb on + strand, within GFF952at 952.083 kb on + strand, within GFF952at 952.083 kb on + strand, within GFF952at 952.120 kb on + strand, within GFF952at 952.148 kb on - strand, within GFF952at 952.189 kb on - strand, within GFF952at 952.197 kb on - strand, within GFF952at 952.197 kb on - strand, within GFF952at 952.211 kb on - strand, within GFF952at 952.234 kb on + strand, within GFF952at 952.235 kb on + strand, within GFF952at 952.242 kb on - strand, within GFF952at 952.245 kb on + strand, within GFF952at 952.263 kb on - strand, within GFF952at 952.274 kb on - strand, within GFF952at 952.275 kb on + strand, within GFF952at 952.286 kb on + strand, within GFF952at 952.294 kb on - strand, within GFF952at 952.301 kb on - strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.324 kb on + strand, within GFF952at 952.325 kb on + strand, within GFF952at 952.331 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.332 kb on - strand, within GFF952at 952.362 kb on + strand, within GFF952at 952.370 kb on - strand, within GFF952at 952.370 kb on - strand, within GFF952at 952.384 kb on + strand, within GFF952at 952.404 kb on - strand, within GFF952at 952.437 kb on + strand, within GFF952at 952.445 kb on - strand, within GFF952at 952.453 kb on - strand, within GFF952at 952.462 kb on + strand, within GFF952at 952.464 kb on + strand, within GFF952at 952.500 kb on - strand, within GFF952at 952.526 kb on + strand, within GFF952at 952.526 kb on + strand, within GFF952at 952.536 kb on - strand, within GFF952at 952.558 kb on - strand, within GFF952at 952.588 kb on + strand, within GFF952at 952.603 kb on - strand, within GFF952at 952.612 kb on - strand, within GFF952at 952.617 kb on - strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.628 kb on - strand, within GFF952at 952.651 kb on - strand, within GFF952at 952.654 kb on + strand, within GFF952at 952.674 kb on + strand, within GFF952at 952.689 kb on + strand, within GFF952at 952.716 kb on + strand, within GFF952at 952.716 kb on + strand, within GFF952at 952.729 kb on - strand, within GFF952at 952.730 kb on - strand, within GFF952at 952.730 kb on - strand, within GFF952at 952.745 kb on + strand, within GFF952at 952.753 kb on - strand, within GFF952at 952.780 kb on - strand, within GFF952at 952.806 kb on + strand, within GFF952at 952.806 kb on + strand, within GFF952at 952.827 kb on + strand, within GFF952at 952.832 kb on + strand, within GFF952at 952.835 kb on - strand, within GFF952at 952.835 kb on - strand, within GFF952at 952.840 kb on - strand, within GFF952at 952.857 kb on + strand, within GFF952at 952.860 kb on + strand, within GFF952

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
950,059 - GFF949 0.40 -1.3
950,082 + GFF949 0.42 +0.6
950,083 + GFF949 0.42 -0.3
950,090 - GFF949 0.43 -0.1
950,126 - GFF949 0.46 +1.1
950,145 - GFF949 0.48 -1.2
950,193 - GFF949 0.52 +0.1
950,193 - GFF949 0.52 -2.4
950,193 - GFF949 0.52 -2.1
950,204 - GFF949 0.53 -2.0
950,225 - GFF949 0.55 -1.2
950,249 + GFF949 0.57 -0.3
950,268 + GFF949 0.59 -1.3
950,276 - GFF949 0.59 +0.1
950,276 - GFF949 0.59 -0.3
950,276 - GFF949 0.59 +1.3
950,286 + GFF949 0.60 -1.0
950,319 + GFF949 0.63 -0.4
950,325 - GFF949 0.64 -0.2
950,432 + GFF949 0.73 -1.4
950,450 - GFF949 0.75 -1.3
950,455 - GFF949 0.75 -0.3
950,455 - GFF949 0.75 -0.5
950,478 - GFF949 0.77 -0.7
950,479 - GFF949 0.77 -1.9
950,486 + GFF949 0.78 -0.4
950,501 + GFF949 0.79 -2.3
950,506 + GFF949 0.80 -0.5
950,529 - GFF949 0.82 -1.5
950,547 + GFF949 0.83 -1.4
950,565 + GFF949 0.85 -1.3
950,595 - GFF949 0.88 -0.4
950,601 + GFF949 0.88 -0.1
950,609 + GFF949 0.89 +2.0
950,609 - GFF949 0.89 +0.8
950,632 - -0.8
950,632 - -1.5
950,634 + -1.2
950,634 + -0.4
950,634 + +0.0
950,634 + -1.4
950,636 + -0.7
950,642 - -0.3
950,644 - -1.4
950,655 + -0.3
950,655 + +0.2
950,663 - -1.6
950,697 - +0.3
950,697 - -1.2
950,697 - +0.8
950,697 - +0.3
950,703 + -0.3
950,704 + -2.8
950,713 - -1.4
950,726 + -1.4
950,744 - -2.4
950,744 - -0.1
950,755 - -2.0
950,914 + GFF950 0.54 -1.4
950,922 - GFF950 0.56 -0.8
950,922 - GFF950 0.56 -0.5
950,938 + GFF950 0.62 +1.9
950,961 + GFF950 0.70 -1.8
950,961 + GFF950 0.70 -1.4
950,961 + GFF950 0.70 -1.2
950,961 + GFF950 0.70 -1.6
950,968 - GFF950 0.72 -1.2
950,995 - GFF950 0.81 -1.4
950,999 + GFF950 0.83 -0.4
951,007 - GFF950 0.85 -1.1
951,040 + -1.4
951,048 - -1.4
951,053 - -2.1
951,059 - +1.4
951,072 + -0.4
951,078 + +0.4
951,160 - GFF951 0.13 -0.4
951,160 - GFF951 0.13 -1.9
951,162 + GFF951 0.13 +0.5
951,162 + GFF951 0.13 +0.5
951,162 + GFF951 0.13 -0.7
951,162 + GFF951 0.13 -1.5
951,162 + GFF951 0.13 +0.8
951,162 + GFF951 0.13 -1.5
951,162 + GFF951 0.13 -1.2
951,165 - GFF951 0.13 -1.4
951,170 - GFF951 0.14 +1.0
951,170 - GFF951 0.14 -1.5
951,170 - GFF951 0.14 -1.3
951,170 - GFF951 0.14 -1.4
951,210 - GFF951 0.19 -0.3
951,260 - GFF951 0.25 -0.4
951,316 + GFF951 0.32 -1.5
951,316 + GFF951 0.32 -0.2
951,316 + GFF951 0.32 +0.8
951,319 - GFF951 0.32 +0.5
951,321 + GFF951 0.32 -0.6
951,321 + GFF951 0.32 -0.2
951,321 + GFF951 0.32 -1.2
951,321 + GFF951 0.32 +0.9
951,324 - GFF951 0.32 +1.3
951,324 - GFF951 0.32 -0.1
951,324 - GFF951 0.32 -0.3
951,324 - GFF951 0.32 -0.7
951,324 - GFF951 0.32 -0.2
951,326 + GFF951 0.33 -1.7
951,326 + GFF951 0.33 +1.2
951,326 + GFF951 0.33 -0.1
951,326 + GFF951 0.33 +0.4
951,326 + GFF951 0.33 -1.5
951,326 + GFF951 0.33 +0.9
951,329 - GFF951 0.33 -0.3
951,334 - GFF951 0.34 +0.2
951,334 - GFF951 0.34 -1.2
951,334 - GFF951 0.34 -1.3
951,350 + GFF951 0.36 -0.2
951,350 + GFF951 0.36 -1.4
951,360 + GFF951 0.37 +0.5
951,368 - GFF951 0.38 -1.5
951,368 - GFF951 0.38 -2.3
951,368 - GFF951 0.38 -1.3
951,396 + GFF951 0.41 -0.4
951,411 - GFF951 0.43 -1.1
951,442 + GFF951 0.47 +0.3
951,445 - GFF951 0.47 +0.5
951,452 + GFF951 0.48 -0.5
951,475 + GFF951 0.51 -2.5
951,480 + GFF951 0.51 +0.2
951,483 - GFF951 0.52 -0.6
951,561 - GFF951 0.61 -2.3
951,578 + GFF951 0.63 -1.3
951,578 + GFF951 0.63 -0.1
951,578 + GFF951 0.63 -2.8
951,596 - GFF951 0.65 -0.8
951,640 - GFF951 0.71 -1.2
951,642 + GFF951 0.71 -2.1
951,681 + GFF951 0.76 -0.7
951,682 + GFF951 0.76 -2.0
951,707 + GFF951 0.79 -1.3
951,715 - GFF951 0.80 +0.0
951,715 - GFF951 0.80 +0.2
951,731 + GFF951 0.82 -1.3
951,737 - GFF951 0.82 -0.1
951,761 + GFF951 0.85 +0.1
951,835 - -0.3
951,849 + -2.0
951,849 + +1.0
951,876 + -1.9
951,876 - +0.3
951,876 - -0.1
951,877 + +1.1
951,877 + -1.8
951,877 + +0.5
951,877 + -0.3
951,877 + -2.9
951,878 - -0.6
951,883 + -1.5
951,883 + -1.3
951,883 - -2.0
951,891 - -0.8
951,915 - -2.1
951,921 - -0.4
951,931 - -2.1
951,962 - -2.0
951,970 - -2.2
952,003 - -1.2
952,029 + -1.3
952,052 + GFF952 0.11 -2.0
952,060 - GFF952 0.12 -1.7
952,060 - GFF952 0.12 -2.9
952,065 + GFF952 0.12 -2.0
952,083 + GFF952 0.14 -1.6
952,083 + GFF952 0.14 +0.2
952,083 + GFF952 0.14 +0.2
952,083 + GFF952 0.14 -1.9
952,120 + GFF952 0.17 -1.8
952,148 - GFF952 0.19 -1.9
952,189 - GFF952 0.22 -2.6
952,197 - GFF952 0.23 -1.2
952,197 - GFF952 0.23 -1.4
952,211 - GFF952 0.24 -1.6
952,234 + GFF952 0.26 -3.1
952,235 + GFF952 0.26 +0.5
952,242 - GFF952 0.26 -0.5
952,245 + GFF952 0.27 -2.1
952,263 - GFF952 0.28 -2.4
952,274 - GFF952 0.29 -0.3
952,275 + GFF952 0.29 -1.2
952,286 + GFF952 0.30 -0.4
952,294 - GFF952 0.30 -1.8
952,301 - GFF952 0.31 -2.6
952,324 + GFF952 0.33 -1.2
952,324 + GFF952 0.33 -1.4
952,324 + GFF952 0.33 -1.4
952,324 + GFF952 0.33 +0.1
952,324 + GFF952 0.33 -1.5
952,324 + GFF952 0.33 -0.8
952,324 + GFF952 0.33 -2.3
952,324 + GFF952 0.33 -0.2
952,324 + GFF952 0.33 -2.6
952,325 + GFF952 0.33 -2.3
952,331 - GFF952 0.33 -0.9
952,332 - GFF952 0.33 -1.7
952,332 - GFF952 0.33 -1.0
952,332 - GFF952 0.33 -0.6
952,332 - GFF952 0.33 +1.2
952,332 - GFF952 0.33 -2.1
952,332 - GFF952 0.33 -0.8
952,332 - GFF952 0.33 -2.3
952,332 - GFF952 0.33 -0.8
952,332 - GFF952 0.33 -0.1
952,362 + GFF952 0.36 -1.7
952,370 - GFF952 0.36 -0.9
952,370 - GFF952 0.36 -0.6
952,384 + GFF952 0.38 -1.8
952,404 - GFF952 0.39 -1.3
952,437 + GFF952 0.42 -2.1
952,445 - GFF952 0.42 -1.7
952,453 - GFF952 0.43 -2.6
952,462 + GFF952 0.44 -1.2
952,464 + GFF952 0.44 -1.4
952,500 - GFF952 0.47 -1.7
952,526 + GFF952 0.49 -2.0
952,526 + GFF952 0.49 -1.1
952,536 - GFF952 0.50 -1.2
952,558 - GFF952 0.51 -2.2
952,588 + GFF952 0.54 -1.6
952,603 - GFF952 0.55 -1.0
952,612 - GFF952 0.56 -1.6
952,617 - GFF952 0.56 -2.1
952,620 + GFF952 0.56 -1.6
952,620 + GFF952 0.56 -1.3
952,620 + GFF952 0.56 -2.3
952,628 - GFF952 0.57 -2.5
952,651 - GFF952 0.59 -2.6
952,654 + GFF952 0.59 -1.6
952,674 + GFF952 0.60 -3.0
952,689 + GFF952 0.62 -2.2
952,716 + GFF952 0.64 -1.0
952,716 + GFF952 0.64 -3.8
952,729 - GFF952 0.65 -1.9
952,730 - GFF952 0.65 -2.6
952,730 - GFF952 0.65 -3.5
952,745 + GFF952 0.66 -4.2
952,753 - GFF952 0.67 -1.3
952,780 - GFF952 0.69 -0.7
952,806 + GFF952 0.71 -2.5
952,806 + GFF952 0.71 -2.6
952,827 + GFF952 0.73 -2.1
952,832 + GFF952 0.73 -2.6
952,835 - GFF952 0.73 -0.5
952,835 - GFF952 0.73 -1.3
952,840 - GFF952 0.74 -3.5
952,857 + GFF952 0.75 -2.5
952,860 + GFF952 0.75 -2.2

Or see this region's nucleotide sequence