Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF945 and GFF946 overlap by 4 nucleotides GFF946 and GFF947 overlap by 4 nucleotides GFF947 and GFF948 are separated by 158 nucleotides
GFF945 - Protein containing domains DUF404, DUF407, DUF403, at 944,523 to 947,006
GFF945
GFF946 - Protein containing transglutaminase-like domain, putative cysteine protease, at 947,003 to 947,908
GFF946
GFF947 - hypothetical protein, at 947,905 to 948,084
GFF947
GFF948 - Cytochrome P450, at 948,243 to 949,610
GFF948
Position (kb) 947
948
949 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 946.927 kb on + strand at 946.928 kb on + strand at 946.936 kb on - strand at 946.951 kb on + strand at 946.954 kb on - strand at 946.971 kb on + strand at 946.972 kb on - strand at 946.979 kb on + strand at 946.987 kb on - strand at 946.992 kb on + strand at 946.995 kb on - strand at 946.997 kb on + strand at 947.000 kb on - strand at 947.008 kb on - strand at 947.008 kb on - strand at 947.008 kb on - strand at 947.010 kb on + strand at 947.013 kb on - strand at 947.015 kb on + strand at 947.018 kb on - strand at 947.035 kb on + strand at 947.058 kb on - strand at 947.072 kb on - strand at 947.089 kb on + strand at 947.089 kb on + strand at 947.089 kb on + strand at 947.097 kb on - strand, within GFF946 at 947.097 kb on - strand, within GFF946 at 947.097 kb on - strand, within GFF946 at 947.097 kb on - strand, within GFF946 at 947.097 kb on - strand, within GFF946 at 947.099 kb on + strand, within GFF946 at 947.102 kb on - strand, within GFF946 at 947.114 kb on + strand, within GFF946 at 947.123 kb on - strand, within GFF946 at 947.128 kb on - strand, within GFF946 at 947.146 kb on + strand, within GFF946 at 947.146 kb on + strand, within GFF946 at 947.154 kb on - strand, within GFF946 at 947.162 kb on - strand, within GFF946 at 947.176 kb on + strand, within GFF946 at 947.180 kb on - strand, within GFF946 at 947.241 kb on + strand, within GFF946 at 947.257 kb on - strand, within GFF946 at 947.270 kb on - strand, within GFF946 at 947.294 kb on - strand, within GFF946 at 947.323 kb on - strand, within GFF946 at 947.323 kb on - strand, within GFF946 at 947.332 kb on + strand, within GFF946 at 947.341 kb on - strand, within GFF946 at 947.354 kb on + strand, within GFF946 at 947.359 kb on + strand, within GFF946 at 947.366 kb on + strand, within GFF946 at 947.366 kb on + strand, within GFF946 at 947.366 kb on + strand, within GFF946 at 947.367 kb on - strand, within GFF946 at 947.372 kb on - strand, within GFF946 at 947.372 kb on - strand, within GFF946 at 947.374 kb on - strand, within GFF946 at 947.374 kb on - strand, within GFF946 at 947.374 kb on - strand, within GFF946 at 947.381 kb on + strand, within GFF946 at 947.419 kb on + strand, within GFF946 at 947.427 kb on - strand, within GFF946 at 947.465 kb on - strand, within GFF946 at 947.470 kb on + strand, within GFF946 at 947.470 kb on + strand, within GFF946 at 947.470 kb on + strand, within GFF946 at 947.470 kb on + strand, within GFF946 at 947.478 kb on - strand, within GFF946 at 947.478 kb on - strand, within GFF946 at 947.480 kb on + strand, within GFF946 at 947.525 kb on + strand, within GFF946 at 947.525 kb on + strand, within GFF946 at 947.555 kb on + strand, within GFF946 at 947.555 kb on + strand, within GFF946 at 947.555 kb on + strand, within GFF946 at 947.563 kb on - strand, within GFF946 at 947.579 kb on - strand, within GFF946 at 947.580 kb on - strand, within GFF946 at 947.593 kb on - strand, within GFF946 at 947.595 kb on + strand, within GFF946 at 947.598 kb on - strand, within GFF946 at 947.603 kb on - strand, within GFF946 at 947.618 kb on - strand, within GFF946 at 947.620 kb on - strand, within GFF946 at 947.620 kb on - strand, within GFF946 at 947.630 kb on - strand, within GFF946 at 947.645 kb on - strand, within GFF946 at 947.664 kb on - strand, within GFF946 at 947.665 kb on + strand, within GFF946 at 947.673 kb on - strand, within GFF946 at 947.681 kb on + strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.689 kb on - strand, within GFF946 at 947.694 kb on - strand, within GFF946 at 947.696 kb on + strand, within GFF946 at 947.699 kb on - strand, within GFF946 at 947.704 kb on + strand, within GFF946 at 947.704 kb on + strand, within GFF946 at 947.704 kb on - strand, within GFF946 at 947.729 kb on - strand, within GFF946 at 947.730 kb on + strand, within GFF946 at 947.730 kb on + strand, within GFF946 at 947.749 kb on + strand, within GFF946 at 947.750 kb on - strand, within GFF946 at 947.765 kb on + strand, within GFF946 at 947.773 kb on + strand, within GFF946 at 947.776 kb on - strand, within GFF946 at 947.781 kb on - strand, within GFF946 at 947.835 kb on + strand at 947.835 kb on + strand at 947.835 kb on + strand at 947.835 kb on + strand at 947.840 kb on + strand at 947.840 kb on + strand at 947.848 kb on - strand at 947.848 kb on - strand at 947.853 kb on - strand at 947.869 kb on - strand at 947.886 kb on - strand at 947.921 kb on + strand at 947.921 kb on + strand at 947.925 kb on + strand, within GFF947 at 947.959 kb on + strand, within GFF947 at 947.960 kb on + strand, within GFF947 at 947.960 kb on + strand, within GFF947 at 947.960 kb on + strand, within GFF947 at 947.960 kb on + strand, within GFF947 at 947.960 kb on + strand, within GFF947 at 947.968 kb on - strand, within GFF947 at 947.968 kb on - strand, within GFF947 at 947.968 kb on - strand, within GFF947 at 947.968 kb on - strand, within GFF947 at 947.985 kb on + strand, within GFF947 at 947.987 kb on + strand, within GFF947 at 947.995 kb on + strand, within GFF947 at 947.995 kb on + strand, within GFF947 at 948.003 kb on - strand, within GFF947 at 948.003 kb on - strand, within GFF947 at 948.003 kb on - strand, within GFF947 at 948.003 kb on - strand, within GFF947 at 948.003 kb on - strand, within GFF947 at 948.003 kb on - strand, within GFF947 at 948.048 kb on + strand, within GFF947 at 948.048 kb on + strand, within GFF947 at 948.052 kb on - strand, within GFF947 at 948.053 kb on + strand, within GFF947 at 948.056 kb on - strand, within GFF947 at 948.056 kb on - strand, within GFF947 at 948.066 kb on - strand, within GFF947 at 948.070 kb on + strand at 948.075 kb on + strand at 948.091 kb on + strand at 948.115 kb on + strand at 948.142 kb on - strand at 948.146 kb on + strand at 948.148 kb on + strand at 948.148 kb on + strand at 948.148 kb on + strand at 948.148 kb on + strand at 948.148 kb on + strand at 948.148 kb on + strand at 948.155 kb on - strand at 948.156 kb on - strand at 948.156 kb on - strand at 948.156 kb on - strand at 948.156 kb on - strand at 948.158 kb on + strand at 948.161 kb on - strand at 948.166 kb on - strand at 948.173 kb on + strand at 948.173 kb on - strand at 948.174 kb on - strand at 948.175 kb on + strand at 948.181 kb on - strand at 948.181 kb on - strand at 948.181 kb on - strand at 948.219 kb on - strand at 948.274 kb on + strand at 948.274 kb on + strand at 948.274 kb on + strand at 948.274 kb on + strand at 948.285 kb on + strand at 948.304 kb on + strand at 948.305 kb on + strand at 948.305 kb on - strand at 948.335 kb on + strand at 948.367 kb on + strand at 948.400 kb on + strand, within GFF948 at 948.430 kb on + strand, within GFF948 at 948.438 kb on + strand, within GFF948 at 948.482 kb on + strand, within GFF948 at 948.509 kb on - strand, within GFF948 at 948.509 kb on - strand, within GFF948 at 948.513 kb on - strand, within GFF948 at 948.524 kb on + strand, within GFF948 at 948.524 kb on + strand, within GFF948 at 948.524 kb on + strand, within GFF948 at 948.532 kb on - strand, within GFF948 at 948.537 kb on - strand, within GFF948 at 948.548 kb on + strand, within GFF948 at 948.551 kb on - strand, within GFF948 at 948.560 kb on + strand, within GFF948 at 948.666 kb on + strand, within GFF948 at 948.674 kb on - strand, within GFF948 at 948.690 kb on + strand, within GFF948 at 948.690 kb on + strand, within GFF948 at 948.690 kb on + strand, within GFF948 at 948.698 kb on - strand, within GFF948 at 948.698 kb on - strand, within GFF948 at 948.725 kb on - strand, within GFF948 at 948.733 kb on + strand, within GFF948 at 948.744 kb on - strand, within GFF948 at 948.744 kb on - strand, within GFF948 at 948.746 kb on - strand, within GFF948 at 948.773 kb on - strand, within GFF948 at 948.782 kb on + strand, within GFF948 at 948.788 kb on - strand, within GFF948 at 948.823 kb on + strand, within GFF948 at 948.860 kb on - strand, within GFF948 at 948.884 kb on - strand, within GFF948 at 948.885 kb on - strand, within GFF948 at 948.927 kb on - strand, within GFF948 at 948.982 kb on - strand, within GFF948 at 948.998 kb on - strand, within GFF948 at 948.998 kb on - strand, within GFF948 at 949.033 kb on + strand, within GFF948
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 946,927 + +1.0 946,928 + +0.6 946,936 - -2.0 946,951 + -1.5 946,954 - -1.4 946,971 + -0.4 946,972 - +0.4 946,979 + +0.4 946,987 - -0.2 946,992 + +0.2 946,995 - -1.9 946,997 + +0.1 947,000 - -2.0 947,008 - -0.5 947,008 - -0.2 947,008 - +1.6 947,010 + -0.8 947,013 - -1.1 947,015 + -0.8 947,018 - +0.3 947,035 + -0.7 947,058 - +0.5 947,072 - -0.2 947,089 + -0.7 947,089 + -0.6 947,089 + -0.3 947,097 - GFF946 0.10 -1.0 947,097 - GFF946 0.10 -0.8 947,097 - GFF946 0.10 +1.3 947,097 - GFF946 0.10 +1.3 947,097 - GFF946 0.10 -0.2 947,099 + GFF946 0.11 -2.4 947,102 - GFF946 0.11 -1.9 947,114 + GFF946 0.12 -2.1 947,123 - GFF946 0.13 -0.2 947,128 - GFF946 0.14 -1.5 947,146 + GFF946 0.16 -1.6 947,146 + GFF946 0.16 +0.0 947,154 - GFF946 0.17 -1.6 947,162 - GFF946 0.18 -1.7 947,176 + GFF946 0.19 -0.4 947,180 - GFF946 0.20 -1.4 947,241 + GFF946 0.26 +1.9 947,257 - GFF946 0.28 +0.3 947,270 - GFF946 0.29 +0.0 947,294 - GFF946 0.32 +0.6 947,323 - GFF946 0.35 +0.0 947,323 - GFF946 0.35 +1.3 947,332 + GFF946 0.36 +0.1 947,341 - GFF946 0.37 +0.1 947,354 + GFF946 0.39 +0.0 947,359 + GFF946 0.39 +0.1 947,366 + GFF946 0.40 -1.3 947,366 + GFF946 0.40 -0.0 947,366 + GFF946 0.40 -1.0 947,367 - GFF946 0.40 +0.1 947,372 - GFF946 0.41 +0.8 947,372 - GFF946 0.41 -0.3 947,374 - GFF946 0.41 +0.1 947,374 - GFF946 0.41 +0.7 947,374 - GFF946 0.41 +0.7 947,381 + GFF946 0.42 -0.8 947,419 + GFF946 0.46 -0.5 947,427 - GFF946 0.47 -1.9 947,465 - GFF946 0.51 -0.6 947,470 + GFF946 0.52 +0.1 947,470 + GFF946 0.52 -1.5 947,470 + GFF946 0.52 +1.0 947,470 + GFF946 0.52 -2.3 947,478 - GFF946 0.52 -1.0 947,478 - GFF946 0.52 +0.6 947,480 + GFF946 0.53 +0.1 947,525 + GFF946 0.58 +2.0 947,525 + GFF946 0.58 -0.7 947,555 + GFF946 0.61 -1.3 947,555 + GFF946 0.61 +0.4 947,555 + GFF946 0.61 +2.4 947,563 - GFF946 0.62 +0.4 947,579 - GFF946 0.64 -0.5 947,580 - GFF946 0.64 -0.7 947,593 - GFF946 0.65 -0.5 947,595 + GFF946 0.65 +2.1 947,598 - GFF946 0.66 +0.7 947,603 - GFF946 0.66 +0.4 947,618 - GFF946 0.68 +0.2 947,620 - GFF946 0.68 -0.4 947,620 - GFF946 0.68 +0.4 947,630 - GFF946 0.69 -0.0 947,645 - GFF946 0.71 -0.7 947,664 - GFF946 0.73 -0.6 947,665 + GFF946 0.73 +1.7 947,673 - GFF946 0.74 +0.4 947,681 + GFF946 0.75 +0.3 947,689 - GFF946 0.76 -1.7 947,689 - GFF946 0.76 +1.6 947,689 - GFF946 0.76 -0.0 947,689 - GFF946 0.76 -0.6 947,689 - GFF946 0.76 -1.2 947,689 - GFF946 0.76 +0.3 947,689 - GFF946 0.76 +1.8 947,689 - GFF946 0.76 -0.1 947,694 - GFF946 0.76 -0.7 947,696 + GFF946 0.76 -2.2 947,699 - GFF946 0.77 -2.4 947,704 + GFF946 0.77 -1.2 947,704 + GFF946 0.77 -0.6 947,704 - GFF946 0.77 -1.4 947,729 - GFF946 0.80 +0.3 947,730 + GFF946 0.80 -0.1 947,730 + GFF946 0.80 -2.1 947,749 + GFF946 0.82 -0.3 947,750 - GFF946 0.82 -0.4 947,765 + GFF946 0.84 +1.1 947,773 + GFF946 0.85 -1.4 947,776 - GFF946 0.85 +0.4 947,781 - GFF946 0.86 -1.7 947,835 + -0.9 947,835 + -1.1 947,835 + +1.5 947,835 + -2.3 947,840 + +0.3 947,840 + +0.5 947,848 - -0.4 947,848 - -2.6 947,853 - -0.7 947,869 - -0.2 947,886 - +0.2 947,921 + +0.6 947,921 + -1.9 947,925 + GFF947 0.11 +0.9 947,959 + GFF947 0.30 +1.3 947,960 + GFF947 0.31 +0.4 947,960 + GFF947 0.31 +1.0 947,960 + GFF947 0.31 -1.1 947,960 + GFF947 0.31 -0.7 947,960 + GFF947 0.31 +1.4 947,968 - GFF947 0.35 -0.5 947,968 - GFF947 0.35 -1.4 947,968 - GFF947 0.35 +0.8 947,968 - GFF947 0.35 +0.4 947,985 + GFF947 0.44 -0.6 947,987 + GFF947 0.46 +0.3 947,995 + GFF947 0.50 +0.3 947,995 + GFF947 0.50 -0.5 948,003 - GFF947 0.54 +0.8 948,003 - GFF947 0.54 +0.7 948,003 - GFF947 0.54 -1.2 948,003 - GFF947 0.54 -0.5 948,003 - GFF947 0.54 -1.5 948,003 - GFF947 0.54 -0.4 948,048 + GFF947 0.79 -3.0 948,048 + GFF947 0.79 -1.4 948,052 - GFF947 0.82 +1.5 948,053 + GFF947 0.82 -0.6 948,056 - GFF947 0.84 +1.2 948,056 - GFF947 0.84 +0.4 948,066 - GFF947 0.89 -0.8 948,070 + -2.1 948,075 + +0.3 948,091 + -1.2 948,115 + -0.2 948,142 - +0.4 948,146 + -1.9 948,148 + -1.3 948,148 + -0.8 948,148 + -0.2 948,148 + -0.2 948,148 + +0.1 948,148 + -1.1 948,155 - -0.9 948,156 - -1.4 948,156 - -1.4 948,156 - +0.6 948,156 - -1.6 948,158 + -0.1 948,161 - +1.4 948,166 - -0.2 948,173 + +0.2 948,173 - +0.7 948,174 - -1.7 948,175 + +0.1 948,181 - -1.3 948,181 - -1.9 948,181 - -0.2 948,219 - -2.3 948,274 + +0.7 948,274 + -2.5 948,274 + -1.4 948,274 + +0.4 948,285 + +0.4 948,304 + -0.6 948,305 + -0.8 948,305 - -1.2 948,335 + -0.4 948,367 + +1.1 948,400 + GFF948 0.11 -2.3 948,430 + GFF948 0.14 -0.2 948,438 + GFF948 0.14 -1.4 948,482 + GFF948 0.17 -1.3 948,509 - GFF948 0.19 -2.8 948,509 - GFF948 0.19 -1.6 948,513 - GFF948 0.20 -1.3 948,524 + GFF948 0.21 +0.9 948,524 + GFF948 0.21 -1.8 948,524 + GFF948 0.21 -0.3 948,532 - GFF948 0.21 +0.2 948,537 - GFF948 0.21 -0.9 948,548 + GFF948 0.22 -2.2 948,551 - GFF948 0.23 -1.4 948,560 + GFF948 0.23 +0.6 948,666 + GFF948 0.31 +1.4 948,674 - GFF948 0.32 +0.0 948,690 + GFF948 0.33 -1.2 948,690 + GFF948 0.33 -0.4 948,690 + GFF948 0.33 -0.3 948,698 - GFF948 0.33 +1.0 948,698 - GFF948 0.33 -0.2 948,725 - GFF948 0.35 -0.3 948,733 + GFF948 0.36 -0.0 948,744 - GFF948 0.37 +1.0 948,744 - GFF948 0.37 +0.3 948,746 - GFF948 0.37 -2.2 948,773 - GFF948 0.39 -1.1 948,782 + GFF948 0.39 -1.3 948,788 - GFF948 0.40 -0.4 948,823 + GFF948 0.42 -0.1 948,860 - GFF948 0.45 +0.1 948,884 - GFF948 0.47 -1.3 948,885 - GFF948 0.47 -0.4 948,927 - GFF948 0.50 +0.8 948,982 - GFF948 0.54 +0.5 948,998 - GFF948 0.55 -1.5 948,998 - GFF948 0.55 -2.1 949,033 + GFF948 0.58 +0.1
Or see this region's nucleotide sequence