Strain Fitness in Sphingobium sp. HT1-2 around GFF871

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
859,516	+		GFF869	0.81	-1.1
859,524	-		GFF869	0.81	-0.5
859,529	+		GFF869	0.82	+0.8
859,532	-		GFF869	0.82	-1.6
859,537	-		GFF869	0.82	-2.5
859,537	-		GFF869	0.82	-0.7
859,537	-		GFF869	0.82	-1.1
859,586	+		GFF869	0.86	+0.8
859,586	+		GFF869	0.86	-0.6
859,586	+		GFF869	0.86	+0.8
859,587	-		GFF869	0.86	-1.6
859,594	-		GFF869	0.87	-0.0
859,594	-		GFF869	0.87	+0.6
859,594	-		GFF869	0.87	+0.8
859,609	+		GFF869	0.88	+0.5
859,617	-		GFF869	0.88	-0.2
859,622	+		GFF869	0.89	+0.7
859,622	+		GFF869	0.89	-0.5
859,630	-		GFF869	0.89	-2.0
859,652	+				-2.3
859,659	+				-0.2
859,659	+				+0.0
859,659	+				+0.0
859,659	+				+0.0
859,674	+				-0.1
859,701	+				-2.0
859,709	-				+1.1
859,709	-				-0.1
859,726	+				-1.0
859,734	-				-0.7
859,734	-				+0.9
859,734	-				-1.4
859,756	+				-0.2
859,764	-				-0.5
859,764	-				-0.9
859,764	-				-1.9
859,764	-				+0.8
859,764	-				+0.5
859,775	+				+0.2
859,781	+				+0.0
859,781	-				+0.2
859,789	-				-0.6
859,789	-				-0.1
859,789	-				+0.4
859,791	+				+0.9
859,794	-				-0.1
859,823	-				+0.1
859,831	-				-2.9
859,836	+				-1.1
859,854	+				+0.2
859,857	-				-1.7
859,941	+				-0.2
859,941	+				-0.2
859,941	+				-0.4
859,944	-				-0.0
859,946	+				-0.2
859,946	+				-1.6
859,949	-		GFF870	0.10	+0.8
859,951	+		GFF870	0.10	+0.5
859,952	+		GFF870	0.11	+0.3
859,959	-		GFF870	0.12	+0.1
859,966	+		GFF870	0.13	-2.6
859,974	-		GFF870	0.15	-0.9
859,974	-		GFF870	0.15	-0.2
859,986	+		GFF870	0.17	-1.3
859,998	-		GFF870	0.19	+0.3
860,000	+		GFF870	0.19	-0.4
860,000	+		GFF870	0.19	+0.2
860,000	+		GFF870	0.19	-0.6
860,000	+		GFF870	0.19	+0.7
860,003	-		GFF870	0.20	+0.6
860,008	-		GFF870	0.21	-0.1
860,008	-		GFF870	0.21	-1.5
860,015	+		GFF870	0.22	-1.5
860,015	+		GFF870	0.22	-0.5
860,016	+		GFF870	0.22	-1.8
860,023	-		GFF870	0.24	+0.4
860,024	-		GFF870	0.24	-0.6
860,038	+		GFF870	0.26	-1.4
860,038	+		GFF870	0.26	-0.6
860,046	-		GFF870	0.28	-0.9
860,065	+		GFF870	0.31	+0.2
860,072	+		GFF870	0.33	-0.1
860,080	-		GFF870	0.34	+0.2
860,084	-		GFF870	0.35	+0.4
860,088	-		GFF870	0.36	+0.4
860,112	+		GFF870	0.40	-0.3
860,120	-		GFF870	0.42	-0.4
860,152	-		GFF870	0.48	-0.1
860,165	+		GFF870	0.50	-1.2
860,165	+		GFF870	0.50	+1.6
860,165	+		GFF870	0.50	-1.1
860,173	-		GFF870	0.51	+0.3
860,173	-		GFF870	0.51	+0.6
860,173	-		GFF870	0.51	+0.2
860,173	-		GFF870	0.51	+0.2
860,183	+		GFF870	0.53	-0.2
860,184	-		GFF870	0.54	-2.5
860,185	-		GFF870	0.54	-1.4
860,190	-		GFF870	0.55	-0.3
860,191	-		GFF870	0.55	-0.8
860,192	-		GFF870	0.55	-0.5
860,196	+		GFF870	0.56	+0.7
860,201	+		GFF870	0.57	-0.5
860,204	-		GFF870	0.57	+0.9
860,211	+		GFF870	0.59	-1.0
860,218	-		GFF870	0.60	-0.0
860,219	-		GFF870	0.60	-1.3
860,233	-		GFF870	0.63	+1.4
860,237	+		GFF870	0.63	+0.7
860,245	-		GFF870	0.65	-0.6
860,260	+		GFF870	0.68	+0.5
860,260	+		GFF870	0.68	+1.8
860,260	+		GFF870	0.68	-0.9
860,264	+		GFF870	0.68	+0.1
860,264	+		GFF870	0.68	+0.8
860,268	-		GFF870	0.69	+0.4
860,268	-		GFF870	0.69	-1.6
860,270	+		GFF870	0.69	+1.2
860,272	-		GFF870	0.70	-1.5
860,308	+		GFF870	0.76	-0.4
860,308	+		GFF870	0.76	-0.6
860,308	+		GFF870	0.76	+0.6
860,316	-		GFF870	0.78	-1.2
860,318	-		GFF870	0.78	+0.5
860,318	-		GFF870	0.78	-1.4
860,357	+		GFF870	0.86	-0.4
860,365	-		GFF870	0.87	+0.2
860,415	+				+0.6
860,423	-				-1.4
860,423	-				-0.4
860,425	+				-2.3
860,434	+				+1.1
860,464	-				+0.3
860,464	-				+1.0
860,464	-				-2.6
860,466	+				-0.3
860,466	+				-0.2
860,474	-				+1.4
860,474	-				-0.4
860,481	-				-0.4
860,483	+				+1.2
860,484	-				+0.2
860,489	-				+0.2
860,495	+				+0.2
860,496	+				+0.6
860,496	+				-0.4
860,496	+				+0.2
860,497	-				-0.4
860,497	-				+0.5
860,497	-				-0.2
860,497	-				-1.4
860,498	-				-0.3
860,504	-				+0.7
860,504	-				-1.4
860,576	+				-0.6
860,600	-				-1.7
860,620	-				-0.6
860,634	-		GFF871	0.10	+0.1
860,634	-		GFF871	0.10	-2.4
860,641	+		GFF871	0.11	-0.4
860,641	-		GFF871	0.11	-0.5
860,649	-		GFF871	0.12	+1.2
860,649	-		GFF871	0.12	-0.9
860,649	-		GFF871	0.12	-1.0
860,687	-		GFF871	0.15	+0.3
860,719	-		GFF871	0.17	+0.5
860,724	-		GFF871	0.18	-0.5
860,752	+		GFF871	0.20	-0.8
860,774	+		GFF871	0.22	-0.5
860,778	+		GFF871	0.22	+0.4
860,785	+		GFF871	0.23	-0.0
860,785	+		GFF871	0.23	+0.8
860,785	+		GFF871	0.23	-1.3
860,785	+		GFF871	0.23	+0.8
860,785	+		GFF871	0.23	+0.7
860,785	+		GFF871	0.23	-0.8
860,785	+		GFF871	0.23	-0.8
860,787	+		GFF871	0.23	-0.7
860,787	+		GFF871	0.23	-1.1
860,793	-		GFF871	0.23	-0.9
860,793	-		GFF871	0.23	-0.2
860,793	-		GFF871	0.23	+1.0
860,793	-		GFF871	0.23	-0.3
860,793	-		GFF871	0.23	+1.0
860,794	-		GFF871	0.24	+0.6
860,800	+		GFF871	0.24	-1.2
860,803	-		GFF871	0.24	+1.0
860,845	-		GFF871	0.28	+0.3
860,850	-		GFF871	0.28	-0.1
860,861	+		GFF871	0.29	+0.1
860,883	+		GFF871	0.31	+0.3
860,885	+		GFF871	0.31	+0.1
860,885	+		GFF871	0.31	-2.5
860,885	+		GFF871	0.31	+0.3
860,885	+		GFF871	0.31	+0.3
860,886	-		GFF871	0.31	-1.4
860,890	+		GFF871	0.31	+0.6
860,893	+		GFF871	0.32	+0.8
860,893	-		GFF871	0.32	-1.4
860,916	+		GFF871	0.33	+0.5
860,936	-		GFF871	0.35	+0.2
860,936	-		GFF871	0.35	-0.4
860,937	+		GFF871	0.35	-0.3
860,938	+		GFF871	0.35	-0.0
860,938	+		GFF871	0.35	-0.5
860,946	-		GFF871	0.36	-0.1
860,946	-		GFF871	0.36	+0.1
860,946	-		GFF871	0.36	-0.2
860,946	-		GFF871	0.36	-1.1
860,946	-		GFF871	0.36	+1.6
860,982	+		GFF871	0.39	-1.4
860,987	+		GFF871	0.39	-0.4
860,987	+		GFF871	0.39	-0.9
860,987	+		GFF871	0.39	+1.1
860,995	-		GFF871	0.40	-1.4
860,995	-		GFF871	0.40	-0.2
860,995	-		GFF871	0.40	+0.8
861,000	-		GFF871	0.40	-2.3
861,024	+		GFF871	0.42	+0.2
861,024	+		GFF871	0.42	-1.7
861,029	+		GFF871	0.43	+0.8
861,056	-		GFF871	0.45	+0.5
861,079	-		GFF871	0.47	-1.4
861,084	+		GFF871	0.47	+0.8
861,090	+		GFF871	0.48	+1.1
861,091	+		GFF871	0.48	+0.5
861,099	-		GFF871	0.48	+0.6
861,123	+		GFF871	0.50	+1.7
861,123	+		GFF871	0.50	+0.2
861,148	+		GFF871	0.52	-2.2
861,156	-		GFF871	0.53	+0.1
861,162	+		GFF871	0.54	-0.8
861,170	-		GFF871	0.54	-0.6
861,170	-		GFF871	0.54	-1.6
861,170	-		GFF871	0.54	-0.2
861,170	-		GFF871	0.54	+1.4
861,193	-		GFF871	0.56	+0.0
861,196	+		GFF871	0.56	+0.6
861,196	+		GFF871	0.56	-1.3
861,196	+		GFF871	0.56	-0.3
861,198	-		GFF871	0.57	-2.1
861,198	-		GFF871	0.57	-1.0
861,204	-		GFF871	0.57	+1.9
861,226	+		GFF871	0.59	-0.9
861,229	-		GFF871	0.59	-0.6
861,230	-		GFF871	0.59	-0.1
861,234	-		GFF871	0.60	+0.4
861,234	-		GFF871	0.60	-0.8
861,234	-		GFF871	0.60	-0.4
861,238	+		GFF871	0.60	-1.4
861,238	+		GFF871	0.60	+0.1
861,238	+		GFF871	0.60	-2.4
861,243	+		GFF871	0.60	-2.5
861,246	-		GFF871	0.61	-3.2
861,263	+		GFF871	0.62	+1.1
861,266	-		GFF871	0.62	+0.0
861,268	+		GFF871	0.62	+1.1
861,273	+		GFF871	0.63	+1.1
861,276	-		GFF871	0.63	+0.5
861,301	+		GFF871	0.65	-0.4
861,309	-		GFF871	0.66	-1.5
861,315	-		GFF871	0.66	-0.6
861,318	-		GFF871	0.66	-0.6
861,328	-		GFF871	0.67	-0.6
861,329	+		GFF871	0.67	+0.3
861,348	+		GFF871	0.69	+0.7
861,348	+		GFF871	0.69	-0.4
861,360	+		GFF871	0.70	+0.1
861,368	+		GFF871	0.71	+0.6
861,376	-		GFF871	0.71	-1.2
861,408	-		GFF871	0.74	-0.0
861,408	-		GFF871	0.74	+0.0
861,413	-		GFF871	0.74	-0.5
861,448	+		GFF871	0.77	-0.5
861,451	+		GFF871	0.77	-2.7
861,457	+		GFF871	0.78	+0.8
861,542	+		GFF871	0.85	+0.1
861,542	+		GFF871	0.85	+0.9
861,542	+		GFF871	0.85	-1.3
861,547	+		GFF871	0.85	+0.4
861,550	-		GFF871	0.85	+0.1
861,550	-		GFF871	0.85	+0.4
861,550	-		GFF871	0.85	-0.7
861,562	-		GFF871	0.86	+0.3
861,608	-				+0.6
861,608	-				-0.9
861,653	+				+1.9
861,657	-				-0.4
861,665	+				-0.4
861,678	-				-0.5
861,678	-				+2.2
861,698	+				-0.4
861,703	+				-2.0
861,703	-				-0.1
861,709	-				+1.5
861,709	-				+0.2
861,721	+				+1.8
861,741	+				-2.5
861,741	+				+1.2
861,741	+				-0.4
861,741	+				-1.3
861,741	+				-0.6
861,741	+				+0.2
861,741	+				+0.6
861,741	+				-0.4
861,741	+				-1.8
861,741	+				-2.0
861,741	+				+0.4
861,749	-				-0.9
861,749	-				-1.7
861,749	-				-0.7
861,749	-				+0.7
861,749	-				+0.7
861,749	-				-2.9
861,780	-		GFF872	0.11	+0.2
861,789	-		GFF872	0.13	+0.2
861,790	+		GFF872	0.13	+1.7
861,791	+		GFF872	0.13	-0.2
861,791	+		GFF872	0.13	+0.3
861,791	+		GFF872	0.13	-1.4
861,809	+		GFF872	0.17	+0.1
861,809	+		GFF872	0.17	-1.3
861,809	+		GFF872	0.17	-0.6
861,809	+		GFF872	0.17	-0.8
861,809	+		GFF872	0.17	-0.3
861,809	-		GFF872	0.17	-0.5
861,817	-		GFF872	0.18	-0.8
861,817	-		GFF872	0.18	-0.0
861,817	-		GFF872	0.18	-0.3
861,819	+		GFF872	0.18	+0.3
861,842	+		GFF872	0.22	+0.0
861,865	+		GFF872	0.26	+0.7
861,913	-		GFF872	0.35	-1.9
861,935	-		GFF872	0.39	+1.2
861,941	-		GFF872	0.40	-0.4
861,942	+		GFF872	0.40	-0.4
861,942	+		GFF872	0.40	-0.3
861,948	+		GFF872	0.41	-0.2
861,948	+		GFF872	0.41	+0.8
861,948	+		GFF872	0.41	-1.4
861,948	+		GFF872	0.41	+0.4
861,956	-		GFF872	0.43	+0.6
861,956	-		GFF872	0.43	-0.6
861,957	-		GFF872	0.43	-1.4
861,968	-		GFF872	0.45	-0.7
861,985	+		GFF872	0.48	-0.1
861,990	-		GFF872	0.49	+0.0
861,995	+		GFF872	0.49	-1.8
861,995	+		GFF872	0.49	+0.6
861,995	-		GFF872	0.49	-1.2
862,011	+		GFF872	0.52	+0.2
862,039	-		GFF872	0.57	+1.7
862,040	-		GFF872	0.57	-1.9
862,049	+		GFF872	0.59	+0.7
862,057	-		GFF872	0.60	+0.7
862,093	+		GFF872	0.67	-1.0
862,114	+		GFF872	0.70	+0.2
862,117	-		GFF872	0.71	+0.4
862,174	-		GFF872	0.81	-0.4
862,219	-		GFF872	0.89	-1.3
862,299	-				-1.6
862,299	-				+1.1
862,307	-				-0.1
862,314	-				-1.2
862,324	+				-0.2
862,327	+				+1.4
862,367	-				+0.0
862,368	+				-1.5
862,381	+				-0.4
862,381	+				+1.2
862,383	+				+0.6
862,383	+				-0.5
862,391	-				-0.2
862,393	+				+0.1
862,398	+				-0.5
862,401	-				+1.5
862,401	-				-0.6
862,406	-				-1.8
862,422	+				+0.0
862,441	+				+0.1
862,443	-				-0.5
862,447	+				+0.0
862,450	-				+0.5
862,457	-				+0.3
862,460	-				-0.4
862,468	-				+0.2
862,484	-				+0.2
862,491	+				+0.5
862,513	+				+1.0
862,523	+				-1.8
862,523	+				-0.4
862,528	+				-1.2
862,528	+				+0.3
862,528	+				-0.8
862,528	+				-2.3
862,528	+				-1.3
862,528	+				+1.0
862,528	+				-1.2
862,528	+				-1.3
862,528	+				-0.0
862,528	+				+0.7
862,528	+				-0.9
862,528	+				+0.5
862,528	+				-0.6
862,528	+				-0.8
862,528	+				-1.2
862,528	+				+0.4
862,531	-				-1.8
862,531	-				-0.8
862,531	-				+0.4
862,536	-				-1.7
862,536	-				-2.0
862,536	-				-1.3
862,536	-				-0.2
862,536	-				-1.0
862,536	-				-1.6
862,536	-				-0.3
862,536	-				+0.3
862,572	-				-0.7
862,590	+		GFF873	0.21	-0.3
862,598	-		GFF873	0.27	-1.4
862,628	-		GFF873	0.49	-2.0
862,648	-		GFF873	0.63	-0.9
862,658	+		GFF873	0.70	-0.2
862,658	+		GFF873	0.70	-0.1
862,658	+		GFF873	0.70	-0.1
862,658	+		GFF873	0.70	-0.9
862,658	+		GFF873	0.70	+0.8
862,658	+		GFF873	0.70	-0.0
862,663	+		GFF873	0.74	+0.9
862,663	+		GFF873	0.74	-1.3
862,663	+		GFF873	0.74	-0.3
862,663	+		GFF873	0.74	-1.5
862,663	+		GFF873	0.74	-0.3
862,666	-		GFF873	0.76	-0.4
862,666	-		GFF873	0.76	-1.3
862,668	+		GFF873	0.78	-0.8
862,668	+		GFF873	0.78	-0.9
862,671	-		GFF873	0.80	-0.0
862,671	-		GFF873	0.80	-1.5
862,671	-		GFF873	0.80	+0.1
862,671	-		GFF873	0.80	-0.3
862,671	-		GFF873	0.80	+0.1
862,676	-		GFF873	0.83	-2.0
862,676	-		GFF873	0.83	-0.4
862,681	+		GFF873	0.87	-0.4
862,687	+				-0.1
862,687	+				-0.3
862,687	+				+0.1
862,712	+				-1.5
862,723	+				+0.6
862,723	+				+0.6
862,723	+				+0.0
862,723	+				-0.0
862,723	+				+0.0