Strain Fitness in Sphingobium sp. HT1-2 around GFF862

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
847,829	+				-1.0
847,829	+				+0.0
847,891	+		GFF861	0.12	+0.3
847,899	-		GFF861	0.12	-0.9
847,900	+		GFF861	0.13	-1.0
847,900	+		GFF861	0.13	-1.6
847,900	+		GFF861	0.13	+1.2
847,908	-		GFF861	0.13	-1.3
847,908	-		GFF861	0.13	-0.1
847,919	+		GFF861	0.14	+1.6
847,995	-		GFF861	0.22	-2.0
848,020	+		GFF861	0.24	+1.4
848,027	-		GFF861	0.25	+0.8
848,028	-		GFF861	0.25	+0.3
848,033	-		GFF861	0.25	+0.2
848,045	+		GFF861	0.26	+0.5
848,050	-		GFF861	0.27	-1.0
848,067	+		GFF861	0.28	-1.5
848,067	+		GFF861	0.28	+0.4
848,068	+		GFF861	0.28	+1.2
848,072	-		GFF861	0.29	+0.8
848,075	-		GFF861	0.29	-0.6
848,083	-		GFF861	0.30	-0.6
848,088	+		GFF861	0.30	-0.0
848,097	+		GFF861	0.31	+0.8
848,107	+		GFF861	0.32	+1.2
848,115	-		GFF861	0.33	+0.8
848,121	+		GFF861	0.33	-0.1
848,131	+		GFF861	0.34	-0.4
848,162	+		GFF861	0.37	-2.5
848,166	+		GFF861	0.38	-1.3
848,169	-		GFF861	0.38	-0.3
848,176	+		GFF861	0.38	-1.1
848,178	+		GFF861	0.39	-1.2
848,202	+		GFF861	0.41	-1.4
848,206	+		GFF861	0.41	-0.8
848,218	+		GFF861	0.42	-1.0
848,225	+		GFF861	0.43	-0.4
848,225	+		GFF861	0.43	+0.1
848,260	+		GFF861	0.46	+1.4
848,268	-		GFF861	0.47	+0.2
848,270	-		GFF861	0.47	-0.8
848,272	+		GFF861	0.48	+0.2
848,280	-		GFF861	0.48	-0.2
848,340	+		GFF861	0.54	-1.2
848,344	-		GFF861	0.54	-0.4
848,345	+		GFF861	0.54	-1.2
848,345	+		GFF861	0.54	+0.3
848,348	-		GFF861	0.55	-2.1
848,348	-		GFF861	0.55	-1.4
848,352	+		GFF861	0.55	-1.1
848,362	+		GFF861	0.56	-2.0
848,368	+		GFF861	0.57	+0.2
848,372	+		GFF861	0.57	+0.1
848,385	+		GFF861	0.58	-0.1
848,385	+		GFF861	0.58	+1.1
848,390	+		GFF861	0.59	-0.4
848,393	-		GFF861	0.59	-0.5
848,393	-		GFF861	0.59	-1.4
848,393	-		GFF861	0.59	+1.2
848,416	-		GFF861	0.61	-0.7
848,431	+		GFF861	0.62	+1.2
848,455	+		GFF861	0.65	+0.7
848,463	-		GFF861	0.65	-0.4
848,472	+		GFF861	0.66	-0.7
848,472	+		GFF861	0.66	-0.0
848,472	+		GFF861	0.66	+0.5
848,473	-		GFF861	0.66	+0.7
848,480	-		GFF861	0.67	+1.9
848,480	-		GFF861	0.67	+0.6
848,480	-		GFF861	0.67	+1.3
848,514	-		GFF861	0.70	+0.7
848,515	+		GFF861	0.70	-0.4
848,523	-		GFF861	0.71	+0.5
848,530	-		GFF861	0.72	-0.8
848,543	-		GFF861	0.73	-1.8
848,545	-		GFF861	0.73	-2.5
848,569	-		GFF861	0.75	-2.1
848,587	-		GFF861	0.77	-0.3
848,588	-		GFF861	0.77	+0.7
848,632	-		GFF861	0.81	+0.2
848,632	-		GFF861	0.81	-0.3
848,661	+		GFF861	0.84	-2.3
848,662	+		GFF861	0.84	-1.8
848,668	+		GFF861	0.85	-2.0
848,668	+		GFF861	0.85	+0.2
848,668	+		GFF861	0.85	-1.7
848,668	+		GFF861	0.85	-2.4
848,668	+		GFF861	0.85	-0.9
848,676	-		GFF861	0.85	+0.7
848,690	+		GFF861	0.87	+0.1
848,691	-		GFF861	0.87	-2.7
848,691	-		GFF861	0.87	+0.0
848,698	+		GFF861	0.88	-2.3
848,698	+		GFF861	0.88	-0.4
848,699	+		GFF861	0.88	-1.5
848,699	+		GFF861	0.88	+1.4
848,699	+		GFF861	0.88	-1.5
848,701	-		GFF861	0.88	-0.7
848,706	+		GFF861	0.88	+0.3
848,706	+		GFF861	0.88	+0.2
848,706	+		GFF861	0.88	+0.1
848,706	+		GFF861	0.88	-0.6
848,706	+		GFF861	0.88	-0.6
848,706	+		GFF861	0.88	-0.9
848,706	+		GFF861	0.88	-1.1
848,706	+		GFF861	0.88	-0.3
848,706	+		GFF861	0.88	-1.8
848,706	+		GFF861	0.88	+0.6
848,706	+		GFF861	0.88	-1.3
848,706	+		GFF861	0.88	+0.9
848,706	+		GFF861	0.88	+0.6
848,706	+		GFF861	0.88	-0.0
848,706	+		GFF861	0.88	-0.7
848,707	-		GFF861	0.88	+0.5
848,708	+		GFF861	0.88	-1.8
848,708	+		GFF861	0.88	-0.4
848,708	+		GFF861	0.88	+2.5
848,708	+		GFF861	0.88	-0.7
848,708	+		GFF861	0.88	-1.7
848,708	+		GFF861	0.88	+0.4
848,714	-		GFF861	0.89	+0.1
848,714	-		GFF861	0.89	-1.3
848,714	-		GFF861	0.89	-0.4
848,714	-		GFF861	0.89	+0.2
848,714	-		GFF861	0.89	+0.4
848,714	-		GFF861	0.89	-1.0
848,714	-		GFF861	0.89	-1.3
848,714	-		GFF861	0.89	-0.6
848,714	-		GFF861	0.89	+0.9
848,714	-		GFF861	0.89	+0.1
848,714	-		GFF861	0.89	+0.7
848,716	-		GFF861	0.89	-0.9
848,716	-		GFF861	0.89	-0.6
848,716	-		GFF861	0.89	-0.6
848,722	+		GFF861	0.90	+0.6
848,722	+		GFF861	0.90	-0.7
848,752	-				+0.4
848,753	+				-1.4
848,769	-				+1.2
848,769	-				-0.4
848,772	+				-0.3
848,772	+				-0.6
848,772	+				-0.5
848,772	+				-1.0
848,772	+				-0.6
848,772	+				+0.2
848,772	+				-1.7
848,772	+				-0.1
848,772	+				+0.6
848,772	+				+0.4
848,772	+				-2.0
848,772	+				-1.6
848,772	+				-0.3
848,772	+				-1.0
848,772	+				-1.3
848,772	+				+0.6
848,780	-				+0.5
848,780	-				-0.3
848,780	-				+0.7
848,780	-				+1.5
848,780	-				-1.2
848,780	-				-0.1
848,780	-				+0.2
848,780	-				-0.0
848,784	+				+0.7
848,790	-				-0.2
848,847	-				+0.2
848,847	-				+0.6
848,849	-				-2.5
848,874	+		GFF862	0.13	-0.0
848,882	-		GFF862	0.15	+1.3
848,884	+		GFF862	0.15	+0.9
848,885	+		GFF862	0.16	-1.2
848,892	-		GFF862	0.18	-2.2
848,892	-		GFF862	0.18	-1.8
848,957	+		GFF862	0.35	-1.0
848,967	-		GFF862	0.38	-1.5
848,979	+		GFF862	0.41	+0.3
848,981	-		GFF862	0.42	+0.0
848,982	+		GFF862	0.42	+1.2
848,987	-		GFF862	0.43	-1.1
849,034	+		GFF862	0.56	+0.8
849,039	+		GFF862	0.57	-0.1
849,045	+		GFF862	0.59	-0.6
849,047	-		GFF862	0.60	-1.4
849,047	-		GFF862	0.60	-1.1
849,047	-		GFF862	0.60	+1.0
849,075	-		GFF862	0.67	+0.2
849,095	+		GFF862	0.73	-0.4
849,103	-		GFF862	0.75	-0.7
849,103	-		GFF862	0.75	-0.9
849,119	+		GFF862	0.79	+0.2
849,127	-		GFF862	0.81	-2.4
849,127	-		GFF862	0.81	-0.6
849,133	-		GFF862	0.83	+0.7
849,144	-		GFF862	0.86	-0.6
849,149	-		GFF862	0.87	+0.5
849,151	+		GFF862	0.88	-1.0
849,151	+		GFF862	0.88	-0.2
849,151	+		GFF862	0.88	-0.2
849,151	+		GFF862	0.88	-0.1
849,151	+		GFF862	0.88	-1.7
849,151	+		GFF862	0.88	-1.0
849,151	+		GFF862	0.88	-0.5
849,151	+		GFF862	0.88	+0.1
849,151	+		GFF862	0.88	-1.6
849,159	-				+1.2
849,159	-				-0.7
849,159	-				-0.2
849,159	-				-0.4
849,159	-				+0.6
849,159	-				-0.3
849,159	-				+0.5
849,159	-				+0.2
849,159	-				+1.7
849,159	-				+1.8
849,159	-				-1.2
849,159	-				+0.6
849,177	+				+0.4
849,177	+				+0.6
849,185	-				+1.5
849,190	+				-0.1
849,192	+				-1.3
849,192	+				-1.2
849,192	+				+0.4
849,192	+				+0.3
849,192	+				-0.9
849,192	-				+0.3
849,199	+				-1.6
849,200	-				-0.8
849,207	-				+0.8
849,214	+				+0.3
849,224	+				-0.5
849,279	-				-0.4
849,296	+				-1.3
849,352	+				-0.1
849,381	+				+1.0
849,414	-				+0.7
849,433	-				-1.6
849,463	-		GFF863	0.12	-1.9
849,504	+		GFF863	0.16	+0.9
849,504	+		GFF863	0.16	-1.0
849,504	+		GFF863	0.16	-1.5
849,512	-		GFF863	0.17	+0.8
849,512	-		GFF863	0.17	+0.2
849,512	-		GFF863	0.17	+0.2
849,512	-		GFF863	0.17	-0.5
849,512	-		GFF863	0.17	-0.3
849,512	-		GFF863	0.17	+0.4
849,512	-		GFF863	0.17	-1.0
849,512	-		GFF863	0.17	+1.1
849,512	-		GFF863	0.17	-1.3
849,512	-		GFF863	0.17	-0.2
849,512	-		GFF863	0.17	+1.1
849,534	-		GFF863	0.19	-0.6
849,537	-		GFF863	0.19	-0.5
849,570	-		GFF863	0.22	+0.9
849,570	-		GFF863	0.22	-0.1
849,577	-		GFF863	0.22	-1.2
849,587	+		GFF863	0.23	-0.3
849,632	+		GFF863	0.27	+1.8
849,671	-		GFF863	0.31	-0.4
849,673	+		GFF863	0.31	-0.6
849,731	+		GFF863	0.36	-2.1
849,731	+		GFF863	0.36	-2.8
849,732	+		GFF863	0.36	-0.7
849,739	-		GFF863	0.37	-0.2
849,757	+		GFF863	0.38	+0.4
849,757	+		GFF863	0.38	-0.0
849,765	-		GFF863	0.39	-0.4
849,772	+		GFF863	0.39	+0.5
849,802	+		GFF863	0.42	+0.4
849,802	+		GFF863	0.42	-0.2
849,802	+		GFF863	0.42	-0.1
849,802	+		GFF863	0.42	-0.2
849,810	-		GFF863	0.43	-0.4
849,810	-		GFF863	0.43	-2.7
849,810	-		GFF863	0.43	+0.4
849,810	-		GFF863	0.43	-0.7
849,810	-		GFF863	0.43	-1.1
849,810	-		GFF863	0.43	+2.1
849,817	+		GFF863	0.43	-1.3
849,825	-		GFF863	0.44	+0.8
849,835	-		GFF863	0.45	+0.3
849,864	+		GFF863	0.48	-0.9
849,890	+		GFF863	0.50	+0.5
849,890	+		GFF863	0.50	-2.6
849,890	+		GFF863	0.50	-0.6
849,890	+		GFF863	0.50	-0.1
849,890	+		GFF863	0.50	+0.2
849,890	+		GFF863	0.50	-1.3
849,898	-		GFF863	0.51	+1.6
849,898	-		GFF863	0.51	-2.2
849,900	+		GFF863	0.51	-0.8
849,905	+		GFF863	0.51	-0.3
849,905	+		GFF863	0.51	+0.7
849,905	+		GFF863	0.51	-0.2
849,905	+		GFF863	0.51	-0.1
849,905	+		GFF863	0.51	-0.6
849,908	-		GFF863	0.51	-2.3
849,913	-		GFF863	0.52	-1.2
849,913	-		GFF863	0.52	-0.2
849,918	+		GFF863	0.52	-1.7
849,926	-		GFF863	0.53	-0.2
849,926	-		GFF863	0.53	+1.0
849,926	-		GFF863	0.53	+0.1
849,942	+		GFF863	0.54	-0.1
849,942	+		GFF863	0.54	+0.2
849,942	+		GFF863	0.54	-1.8
849,942	+		GFF863	0.54	+0.3
849,950	-		GFF863	0.55	-0.2
849,950	-		GFF863	0.55	+1.1
849,950	-		GFF863	0.55	+0.4
849,950	-		GFF863	0.55	+0.1
849,950	-		GFF863	0.55	-1.7
849,950	-		GFF863	0.55	-0.3
849,952	+		GFF863	0.55	+1.5
849,963	+		GFF863	0.56	-1.2
849,963	+		GFF863	0.56	-2.2
849,995	+		GFF863	0.59	-0.3
849,998	-		GFF863	0.59	-0.7
850,026	-		GFF863	0.62	+0.1
850,038	+		GFF863	0.63	+0.0
850,051	-		GFF863	0.64	+0.1
850,056	-		GFF863	0.64	+0.3
850,067	-		GFF863	0.65	-0.6
850,078	+		GFF863	0.66	+0.8
850,078	+		GFF863	0.66	-0.6
850,078	+		GFF863	0.66	+0.9
850,078	+		GFF863	0.66	-0.1
850,078	+		GFF863	0.66	-1.6
850,078	+		GFF863	0.66	-0.4
850,078	+		GFF863	0.66	-0.6
850,078	+		GFF863	0.66	+0.9
850,078	+		GFF863	0.66	+0.1
850,078	+		GFF863	0.66	+0.3
850,078	+		GFF863	0.66	-0.2
850,079	-		GFF863	0.66	-1.2
850,083	+		GFF863	0.67	+0.4
850,086	-		GFF863	0.67	-0.8
850,086	-		GFF863	0.67	-1.4
850,086	-		GFF863	0.67	-1.2
850,086	-		GFF863	0.67	-0.3
850,086	-		GFF863	0.67	-1.7
850,086	-		GFF863	0.67	-0.4
850,091	-		GFF863	0.68	-1.0
850,092	-		GFF863	0.68	-2.1
850,093	+		GFF863	0.68	-0.4
850,116	+		GFF863	0.70	+0.8
850,136	+		GFF863	0.72	-1.4
850,137	-		GFF863	0.72	+0.6
850,165	+		GFF863	0.74	+0.5
850,169	+		GFF863	0.74	+0.8
850,173	+		GFF863	0.75	+0.7
850,179	+		GFF863	0.75	-0.2
850,179	-		GFF863	0.75	-1.7
850,179	-		GFF863	0.75	-1.2
850,181	-		GFF863	0.75	-0.1
850,181	-		GFF863	0.75	+0.8
850,184	+		GFF863	0.76	+1.1
850,186	-		GFF863	0.76	+0.1
850,189	+		GFF863	0.76	-0.4
850,189	+		GFF863	0.76	+0.4
850,189	+		GFF863	0.76	+0.9
850,189	+		GFF863	0.76	-0.1
850,191	-		GFF863	0.76	-1.6
850,192	-		GFF863	0.76	-1.2
850,194	+		GFF863	0.77	-0.6