Strain Fitness in Sphingobium sp. HT1-2 around GFF71

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
58,927	-		GFF69	0.35	-0.2
58,929	+		GFF69	0.35	+0.4
58,933	+		GFF69	0.36	+0.6
58,937	-		GFF69	0.36	-1.1
58,940	-		GFF69	0.36	-1.0
58,973	-		GFF69	0.40	+0.6
59,010	-		GFF69	0.44	-1.7
59,037	+		GFF69	0.47	-0.7
59,045	-		GFF69	0.48	+0.8
59,064	-		GFF69	0.50	+0.6
59,157	+		GFF69	0.60	-1.2
59,173	-		GFF69	0.62	+0.2
59,173	-		GFF69	0.62	+1.1
59,173	-		GFF69	0.62	-1.7
59,173	-		GFF69	0.62	+0.5
59,197	-		GFF69	0.65	-0.7
59,204	-		GFF69	0.65	+0.0
59,227	-		GFF69	0.68	+0.3
59,231	+		GFF69	0.68	+0.0
59,231	+		GFF69	0.68	+0.2
59,231	+		GFF69	0.68	-2.4
59,231	+		GFF69	0.68	+1.1
59,237	-		GFF69	0.69	-0.7
59,239	-		GFF69	0.69	+0.5
59,239	-		GFF69	0.69	-0.9
59,239	-		GFF69	0.69	-0.7
59,239	-		GFF69	0.69	-1.5
59,239	-		GFF69	0.69	-0.6
59,239	-		GFF69	0.69	-1.1
59,249	+		GFF69	0.70	-1.5
59,254	+		GFF69	0.71	+1.2
59,254	+		GFF69	0.71	-0.6
59,254	+		GFF69	0.71	-0.6
59,257	-		GFF69	0.71	+0.5
59,262	-		GFF69	0.72	-1.5
59,262	-		GFF69	0.72	+0.3
59,262	-		GFF69	0.72	+1.1
59,262	-		GFF69	0.72	+1.0
59,286	+		GFF69	0.74	+0.9
59,286	+		GFF69	0.74	-0.1
59,289	-		GFF69	0.75	-0.3
59,296	-		GFF69	0.76	+0.4
59,308	-		GFF69	0.77	+1.2
59,318	-		GFF69	0.78	-0.2
59,349	+		GFF69	0.81	-0.2
59,357	-		GFF69	0.82	+1.0
59,366	+		GFF69	0.83	+0.8
59,366	+		GFF69	0.83	-1.8
59,366	+		GFF69	0.83	-1.4
59,374	-		GFF69	0.84	-0.3
59,374	-		GFF69	0.84	-1.4
59,374	-		GFF69	0.84	+0.3
59,377	+		GFF69	0.84	-0.7
59,377	+		GFF69	0.84	-0.8
59,377	+		GFF69	0.84	+0.9
59,377	+		GFF69	0.84	+0.8
59,384	-		GFF69	0.85	+0.9
59,385	-		GFF69	0.85	-0.7
59,394	-		GFF69	0.86	+0.7
59,400	-		GFF69	0.87	+0.5
59,425	-		GFF69	0.90	-0.4
59,427	-				+0.2
59,475	+				-0.3
59,478	-				+0.8
59,499	+				+0.7
59,500	-				-0.4
59,517	+				-2.0
59,517	+				-0.5
59,518	+				-0.0
59,518	+				+1.3
59,526	-				-0.1
59,526	-				-0.1
59,526	-				+0.2
59,526	-				+1.5
59,550	+				-2.0
59,554	-				+0.7
59,556	-				-0.0
59,640	+				+0.2
59,648	-				-0.2
59,648	-				-1.4
59,693	+		GFF70	0.23	-1.3
59,700	+		GFF70	0.27	-0.3
59,711	+		GFF70	0.32	-0.3
59,719	-		GFF70	0.35	-0.2
59,728	+		GFF70	0.39	+0.1
59,736	-		GFF70	0.43	-1.8
59,754	+		GFF70	0.51	-1.2
59,759	+		GFF70	0.53	-0.4
59,767	-		GFF70	0.57	+0.2
59,786	-		GFF70	0.65	-0.1
59,824	-		GFF70	0.82	+0.5
59,824	-		GFF70	0.82	+0.1
59,824	-		GFF70	0.82	+0.6
59,846	+				-1.5
59,859	+				-0.3
59,867	-				-1.0
59,877	-				+1.5
59,897	+				-0.2
59,905	-				-1.5
59,905	-				+1.3
59,933	+				+0.3
59,941	-				-0.4
59,981	-				+1.0
59,982	+				-0.0
59,990	-				-0.8
60,004	+				+0.1
60,020	-		GFF71	0.10	+1.4
60,031	+		GFF71	0.11	+0.4
60,042	+		GFF71	0.12	+1.8
60,068	+		GFF71	0.14	+0.5
60,101	+		GFF71	0.17	-0.2
60,101	+		GFF71	0.17	-1.8
60,104	-		GFF71	0.17	-1.2
60,120	+		GFF71	0.18	+0.4
60,176	-		GFF71	0.23	-1.0
60,194	+		GFF71	0.24	-1.6
60,194	+		GFF71	0.24	+0.7
60,194	+		GFF71	0.24	+1.3
60,194	+		GFF71	0.24	+0.6
60,194	+		GFF71	0.24	-2.6
60,194	+		GFF71	0.24	+0.2
60,199	+		GFF71	0.24	-0.5
60,199	+		GFF71	0.24	+0.6
60,199	+		GFF71	0.24	-0.4
60,202	-		GFF71	0.25	-0.2
60,202	-		GFF71	0.25	-0.1
60,202	-		GFF71	0.25	-1.8
60,202	-		GFF71	0.25	+0.4
60,202	-		GFF71	0.25	-0.1
60,202	-		GFF71	0.25	-0.8
60,202	-		GFF71	0.25	-0.0
60,208	+		GFF71	0.25	-1.0
60,208	-		GFF71	0.25	+0.1
60,209	+		GFF71	0.25	-1.0
60,212	-		GFF71	0.25	+0.1
60,223	+		GFF71	0.26	+0.4
60,238	+		GFF71	0.27	-0.5
60,238	+		GFF71	0.27	-0.4
60,242	+		GFF71	0.28	-0.9
60,243	+		GFF71	0.28	-2.9
60,246	-		GFF71	0.28	-0.5
60,248	+		GFF71	0.28	-1.2
60,251	-		GFF71	0.28	-1.5
60,317	+		GFF71	0.34	+0.5
60,317	+		GFF71	0.34	-0.4
60,355	+		GFF71	0.37	-1.2
60,363	-		GFF71	0.37	-0.6
60,365	-		GFF71	0.38	+0.9
60,365	-		GFF71	0.38	-2.2
60,387	+		GFF71	0.39	+0.5
60,390	-		GFF71	0.40	-0.4
60,392	+		GFF71	0.40	+1.3
60,400	+		GFF71	0.40	+1.3
60,408	-		GFF71	0.41	+1.0
60,408	-		GFF71	0.41	+0.3
60,410	+		GFF71	0.41	-1.5
60,417	+		GFF71	0.42	-0.2
60,417	+		GFF71	0.42	-1.2
60,425	-		GFF71	0.42	+0.3
60,442	-		GFF71	0.44	+0.8
60,459	+		GFF71	0.45	+0.9
60,469	-		GFF71	0.46	-1.3
60,513	+		GFF71	0.49	-0.5
60,518	+		GFF71	0.50	-0.9
60,521	-		GFF71	0.50	+0.1
60,537	+		GFF71	0.51	+0.8
60,544	+		GFF71	0.52	-0.2
60,566	+		GFF71	0.53	+0.1
60,583	-		GFF71	0.55	+0.4
60,623	+		GFF71	0.58	-1.4
60,641	+		GFF71	0.59	-1.0
60,649	-		GFF71	0.60	-0.1
60,650	-		GFF71	0.60	-0.9
60,706	-		GFF71	0.65	+1.0
60,706	-		GFF71	0.65	+0.7
60,745	+		GFF71	0.68	+1.3
60,750	+		GFF71	0.68	-0.4
60,755	+		GFF71	0.68	+0.4
60,755	+		GFF71	0.68	-0.2
60,763	-		GFF71	0.69	-0.3
60,795	+		GFF71	0.72	-0.7
60,795	+		GFF71	0.72	-0.9
60,803	-		GFF71	0.72	-1.0
60,812	-		GFF71	0.73	-0.1
60,847	+		GFF71	0.76	-0.3
60,886	+		GFF71	0.79	-1.0
60,907	+		GFF71	0.81	-0.4
60,914	+		GFF71	0.81	-0.6
60,921	+		GFF71	0.82	-0.0
60,921	+		GFF71	0.82	-1.9
60,921	+		GFF71	0.82	-0.3
60,929	-		GFF71	0.82	+0.1
60,929	-		GFF71	0.82	+0.4
60,929	-		GFF71	0.82	-1.0
60,929	-		GFF71	0.82	+1.0
60,952	-		GFF71	0.84	-0.8
60,967	+		GFF71	0.85	-1.0
60,975	-		GFF71	0.86	-0.6
61,015	+		GFF71	0.89	-0.2
61,017	+		GFF71	0.89	-1.0
61,017	+		GFF71	0.89	-0.7
61,018	-		GFF71	0.89	-1.4
61,018	-		GFF71	0.89	-0.7
61,020	+		GFF71	0.90	+1.1
61,023	-		GFF71	0.90	+0.5
61,025	+		GFF71	0.90	+0.1
61,025	+		GFF71	0.90	-0.6
61,033	+				+0.9
61,033	-				-1.9
61,041	+				-1.6
61,041	+				+0.2
61,049	-				+0.4
61,049	-				-2.0
61,049	-				-0.3
61,056	+				+0.4
61,085	+				-0.1
61,085	+				-0.4
61,086	+				+1.1
61,087	-				+0.2
61,093	-				+0.5
61,093	-				+0.5
61,108	-				-0.8
61,123	-				-0.2
61,145	+				-1.5
61,154	-				-0.1
61,155	-				-0.1
61,163	-				-2.6
61,175	-				-0.0
61,175	-				-0.2
61,188	+				-0.2
61,196	-				-0.1
61,206	-				-1.2
61,241	+				-0.6
61,241	+				-1.9
61,241	+				-1.2
61,241	+				+0.3
61,243	+				-0.3
61,243	+				-0.0
61,249	-		GFF72	0.10	-1.3
61,249	-		GFF72	0.10	-0.4
61,249	-		GFF72	0.10	-1.7
61,249	-		GFF72	0.10	+0.3
61,249	-		GFF72	0.10	-1.0
61,249	-		GFF72	0.10	-1.4
61,249	-		GFF72	0.10	+0.3
61,249	-		GFF72	0.10	+0.5
61,251	-		GFF72	0.10	-1.2
61,251	-		GFF72	0.10	+0.6
61,251	-		GFF72	0.10	-1.4
61,252	+		GFF72	0.10	-0.5
61,253	+		GFF72	0.10	-1.0
61,260	-		GFF72	0.11	-2.1
61,261	-		GFF72	0.11	-1.8
61,261	-		GFF72	0.11	-1.8
61,261	-		GFF72	0.11	-2.2
61,287	+		GFF72	0.14	-0.8
61,295	-		GFF72	0.15	-1.4
61,316	+		GFF72	0.17	+0.7
61,333	+		GFF72	0.18	-0.4
61,333	+		GFF72	0.18	+0.6
61,351	+		GFF72	0.20	+0.2
61,359	+		GFF72	0.21	-1.5
61,359	+		GFF72	0.21	-0.3
61,359	+		GFF72	0.21	-0.6
61,359	+		GFF72	0.21	+0.6
61,359	+		GFF72	0.21	+0.6
61,359	+		GFF72	0.21	+0.0
61,359	+		GFF72	0.21	-1.7
61,359	+		GFF72	0.21	-2.6
61,359	+		GFF72	0.21	-0.3
61,360	-		GFF72	0.21	-0.4
61,367	-		GFF72	0.22	+1.2
61,367	-		GFF72	0.22	-0.7
61,367	-		GFF72	0.22	-0.2
61,367	-		GFF72	0.22	-0.2
61,367	-		GFF72	0.22	+0.4
61,367	-		GFF72	0.22	-0.2
61,367	-		GFF72	0.22	+0.9
61,367	-		GFF72	0.22	+0.6
61,367	-		GFF72	0.22	+1.1
61,367	-		GFF72	0.22	-0.7
61,367	-		GFF72	0.22	+0.1
61,369	+		GFF72	0.22	-0.0
61,378	+		GFF72	0.23	-1.9
61,382	-		GFF72	0.23	+0.4
61,427	+		GFF72	0.28	+0.2
61,427	+		GFF72	0.28	-0.0
61,448	-		GFF72	0.30	+0.4
61,459	-		GFF72	0.31	+0.1
61,473	+		GFF72	0.32	+0.9
61,473	+		GFF72	0.32	-0.2
61,473	+		GFF72	0.32	+0.2
61,476	-		GFF72	0.33	-1.2
61,478	+		GFF72	0.33	+1.0
61,481	-		GFF72	0.33	-1.4
61,486	-		GFF72	0.34	+0.7
61,511	-		GFF72	0.36	-0.2
61,513	+		GFF72	0.36	-1.3
61,513	+		GFF72	0.36	-2.0
61,513	+		GFF72	0.36	-0.2
61,514	-		GFF72	0.36	-0.5
61,516	-		GFF72	0.37	-2.4
61,521	+		GFF72	0.37	-1.4
61,521	-		GFF72	0.37	+0.0
61,521	-		GFF72	0.37	-0.6
61,521	-		GFF72	0.37	+0.6
61,529	-		GFF72	0.38	+0.0
61,529	-		GFF72	0.38	+1.3
61,541	-		GFF72	0.39	+0.4
61,551	+		GFF72	0.40	-0.4
61,551	+		GFF72	0.40	-1.5
61,551	+		GFF72	0.40	-0.0
61,559	-		GFF72	0.41	+0.3
61,559	-		GFF72	0.41	+0.1
61,559	-		GFF72	0.41	+0.2
61,565	+		GFF72	0.41	-1.0
61,575	+		GFF72	0.42	-0.9
61,575	+		GFF72	0.42	+0.2
61,575	+		GFF72	0.42	-1.7
61,575	+		GFF72	0.42	-1.2
61,583	-		GFF72	0.43	-2.0
61,583	-		GFF72	0.43	-0.1
61,583	-		GFF72	0.43	-0.9
61,621	+		GFF72	0.47	-1.7
61,621	+		GFF72	0.47	-1.3
61,640	-		GFF72	0.49	-0.4
61,640	-		GFF72	0.49	-1.0
61,640	-		GFF72	0.49	+1.4
61,670	+		GFF72	0.52	+0.2
61,675	+		GFF72	0.52	-1.8
61,675	+		GFF72	0.52	-0.9
61,675	+		GFF72	0.52	+0.8
61,675	+		GFF72	0.52	+0.2
61,683	-		GFF72	0.53	+0.9
61,711	+		GFF72	0.56	-1.2
61,720	+		GFF72	0.57	-2.0
61,720	+		GFF72	0.57	-1.8
61,720	+		GFF72	0.57	+0.8
61,726	-		GFF72	0.57	+1.0
61,734	-		GFF72	0.58	-0.2
61,749	+		GFF72	0.60	-1.4
61,750	+		GFF72	0.60	-0.5
61,758	-		GFF72	0.61	+0.0
61,758	-		GFF72	0.61	+1.2
61,781	+		GFF72	0.63	-0.1
61,789	-		GFF72	0.64	+0.9
61,856	+		GFF72	0.70	-0.2
61,859	-		GFF72	0.71	+0.0
61,859	-		GFF72	0.71	+0.4
61,859	-		GFF72	0.71	+0.9
61,859	-		GFF72	0.71	-1.8
61,859	-		GFF72	0.71	-0.7
61,859	-		GFF72	0.71	-0.7
61,859	-		GFF72	0.71	-0.3
61,869	-		GFF72	0.72	-1.7
61,871	+		GFF72	0.72	+1.0
61,886	+		GFF72	0.73	-0.5
61,899	+		GFF72	0.75	-2.2
61,899	+		GFF72	0.75	-0.5
61,899	-		GFF72	0.75	+0.1
61,899	-		GFF72	0.75	-0.8
61,901	-		GFF72	0.75	-0.2
61,907	-		GFF72	0.75	-1.3
61,908	+		GFF72	0.75	+0.1
61,913	+		GFF72	0.76	-0.3
61,913	+		GFF72	0.76	-1.0
61,913	+		GFF72	0.76	+0.0
61,916	-		GFF72	0.76	-0.1
61,921	-		GFF72	0.77	-0.9
61,924	-		GFF72	0.77	-0.9
61,934	-		GFF72	0.78	+1.2
61,942	-		GFF72	0.79	+1.1
61,942	-		GFF72	0.79	-1.7
61,954	-		GFF72	0.80	+0.2
61,966	+		GFF72	0.81	-0.8
61,968	+		GFF72	0.81	-1.2
61,968	+		GFF72	0.81	+0.8
61,976	-		GFF72	0.82	-0.2
61,979	+		GFF72	0.82	-0.9
61,986	-		GFF72	0.83	+1.2
61,986	-		GFF72	0.83	-0.3
61,986	-		GFF72	0.83	-0.2
61,986	-		GFF72	0.83	-0.6
61,993	+		GFF72	0.84	-0.9
61,993	+		GFF72	0.84	+0.3
61,993	+		GFF72	0.84	+0.4
61,998	+		GFF72	0.84	-0.6
61,998	+		GFF72	0.84	-0.4
62,007	+		GFF72	0.85	+0.1
62,015	-		GFF72	0.86	-1.2
62,022	-		GFF72	0.87	-0.7
62,032	+		GFF72	0.88	-1.2
62,032	+		GFF72	0.88	-1.0
62,032	+		GFF72	0.88	-0.0
62,040	-		GFF72	0.88	-1.1
62,041	+		GFF72	0.89	+0.1
62,049	-		GFF72	0.89	-0.6
62,062	-				-1.4
62,081	-				-0.1
62,081	-				-1.6
62,084	+				-0.5
62,092	-				-0.8
62,092	-				-1.0
62,092	-				-1.4
62,114	+				-0.6
62,148	+				+0.1
62,148	-				-1.3