Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF641 and GFF642 are separated by 143 nucleotides GFF642 and GFF643 are separated by 143 nucleotides GFF643 and GFF644 are separated by 177 nucleotides
GFF641 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 639,005 to 640,513
GFF641
GFF642 - hypothetical protein, at 640,657 to 641,262
GFF642
GFF643 - ATP-dependent Clp protease adaptor protein ClpS, at 641,406 to 641,777
GFF643
GFF644 - hypothetical protein, at 641,955 to 642,818
GFF644
Position (kb) 641
642 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 640.409 kb on - strand at 640.411 kb on + strand at 640.411 kb on + strand at 640.411 kb on + strand at 640.411 kb on + strand at 640.417 kb on + strand at 640.419 kb on - strand at 640.443 kb on + strand at 640.443 kb on + strand at 640.451 kb on + strand at 640.451 kb on - strand at 640.452 kb on - strand at 640.453 kb on + strand at 640.453 kb on + strand at 640.459 kb on - strand at 640.461 kb on - strand at 640.474 kb on + strand at 640.474 kb on + strand at 640.474 kb on + strand at 640.474 kb on + strand at 640.474 kb on + strand at 640.480 kb on + strand at 640.482 kb on - strand at 640.482 kb on - strand at 640.482 kb on - strand at 640.482 kb on - strand at 640.482 kb on - strand at 640.528 kb on - strand at 640.554 kb on - strand at 640.588 kb on - strand at 640.600 kb on + strand at 640.608 kb on - strand at 640.612 kb on + strand at 640.620 kb on - strand at 640.620 kb on - strand at 640.620 kb on - strand at 640.620 kb on - strand at 640.629 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.639 kb on + strand at 640.641 kb on + strand at 640.644 kb on + strand at 640.647 kb on - strand at 640.647 kb on - strand at 640.647 kb on - strand at 640.647 kb on - strand at 640.665 kb on + strand at 640.667 kb on - strand at 640.667 kb on - strand at 640.673 kb on - strand at 640.685 kb on - strand at 640.704 kb on - strand at 640.731 kb on + strand, within GFF642 at 640.739 kb on - strand, within GFF642 at 640.739 kb on - strand, within GFF642 at 640.739 kb on - strand, within GFF642 at 640.795 kb on + strand, within GFF642 at 640.795 kb on + strand, within GFF642 at 640.804 kb on + strand, within GFF642 at 640.809 kb on + strand, within GFF642 at 640.819 kb on + strand, within GFF642 at 640.825 kb on - strand, within GFF642 at 640.832 kb on + strand, within GFF642 at 640.837 kb on + strand, within GFF642 at 640.837 kb on + strand, within GFF642 at 640.840 kb on - strand, within GFF642 at 640.845 kb on - strand, within GFF642 at 640.845 kb on - strand, within GFF642 at 640.845 kb on - strand, within GFF642 at 640.845 kb on - strand, within GFF642 at 640.845 kb on - strand, within GFF642 at 640.873 kb on + strand, within GFF642 at 640.902 kb on + strand, within GFF642 at 640.912 kb on + strand, within GFF642 at 640.913 kb on + strand, within GFF642 at 640.917 kb on + strand, within GFF642 at 640.919 kb on + strand, within GFF642 at 640.919 kb on + strand, within GFF642 at 640.927 kb on - strand, within GFF642 at 640.935 kb on - strand, within GFF642 at 640.935 kb on - strand, within GFF642 at 640.935 kb on - strand, within GFF642 at 640.935 kb on - strand, within GFF642 at 640.942 kb on - strand, within GFF642 at 640.955 kb on - strand, within GFF642 at 640.957 kb on + strand, within GFF642 at 640.965 kb on - strand, within GFF642 at 640.968 kb on + strand, within GFF642 at 640.979 kb on + strand, within GFF642 at 640.989 kb on - strand, within GFF642 at 641.002 kb on - strand, within GFF642 at 641.002 kb on - strand, within GFF642 at 641.002 kb on - strand, within GFF642 at 641.004 kb on + strand, within GFF642 at 641.076 kb on + strand, within GFF642 at 641.084 kb on - strand, within GFF642 at 641.086 kb on + strand, within GFF642 at 641.094 kb on - strand, within GFF642 at 641.103 kb on - strand, within GFF642 at 641.107 kb on - strand, within GFF642 at 641.110 kb on - strand, within GFF642 at 641.110 kb on - strand, within GFF642 at 641.154 kb on - strand, within GFF642 at 641.168 kb on + strand, within GFF642 at 641.230 kb on + strand at 641.263 kb on - strand at 641.356 kb on + strand at 641.356 kb on + strand at 641.356 kb on + strand at 641.356 kb on + strand at 641.356 kb on + strand at 641.356 kb on + strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.364 kb on - strand at 641.385 kb on - strand at 641.402 kb on - strand at 641.404 kb on + strand at 641.404 kb on + strand at 641.412 kb on - strand at 641.412 kb on - strand at 641.412 kb on - strand at 641.437 kb on + strand at 641.447 kb on + strand, within GFF643 at 641.465 kb on - strand, within GFF643 at 641.473 kb on + strand, within GFF643 at 641.473 kb on + strand, within GFF643 at 641.479 kb on + strand, within GFF643 at 641.481 kb on - strand, within GFF643 at 641.489 kb on + strand, within GFF643 at 641.489 kb on + strand, within GFF643 at 641.497 kb on - strand, within GFF643 at 641.497 kb on - strand, within GFF643 at 641.497 kb on - strand, within GFF643 at 641.504 kb on - strand, within GFF643 at 641.511 kb on + strand, within GFF643 at 641.513 kb on + strand, within GFF643 at 641.513 kb on + strand, within GFF643 at 641.521 kb on - strand, within GFF643 at 641.540 kb on + strand, within GFF643 at 641.540 kb on + strand, within GFF643 at 641.547 kb on - strand, within GFF643 at 641.548 kb on - strand, within GFF643 at 641.559 kb on + strand, within GFF643 at 641.559 kb on + strand, within GFF643 at 641.559 kb on + strand, within GFF643 at 641.567 kb on - strand, within GFF643 at 641.567 kb on - strand, within GFF643 at 641.612 kb on - strand, within GFF643 at 641.631 kb on + strand, within GFF643 at 641.631 kb on + strand, within GFF643 at 641.666 kb on + strand, within GFF643 at 641.672 kb on + strand, within GFF643 at 641.680 kb on - strand, within GFF643 at 641.699 kb on + strand, within GFF643 at 641.707 kb on - strand, within GFF643 at 641.713 kb on + strand, within GFF643 at 641.713 kb on + strand, within GFF643 at 641.728 kb on + strand, within GFF643 at 641.731 kb on - strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.734 kb on + strand, within GFF643 at 641.736 kb on + strand, within GFF643 at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.742 kb on - strand at 641.766 kb on - strand at 641.766 kb on - strand at 641.766 kb on - strand at 641.766 kb on - strand at 641.819 kb on - strand at 641.848 kb on - strand at 641.848 kb on - strand at 641.876 kb on + strand at 641.894 kb on + strand at 641.956 kb on - strand at 642.004 kb on + strand at 642.085 kb on - strand, within GFF644 at 642.147 kb on - strand, within GFF644 at 642.197 kb on - strand, within GFF644 at 642.222 kb on + strand, within GFF644 at 642.244 kb on + strand, within GFF644 at 642.270 kb on - strand, within GFF644 at 642.322 kb on + strand, within GFF644 at 642.349 kb on - strand, within GFF644 at 642.349 kb on - strand, within GFF644 at 642.349 kb on - strand, within GFF644 at 642.395 kb on - strand, within GFF644 at 642.405 kb on - strand, within GFF644 at 642.500 kb on - strand, within GFF644 at 642.515 kb on + strand, within GFF644 at 642.520 kb on + strand, within GFF644 at 642.528 kb on + strand, within GFF644 at 642.528 kb on - strand, within GFF644 at 642.663 kb on + strand, within GFF644 at 642.664 kb on + strand, within GFF644 at 642.672 kb on - strand, within GFF644 at 642.676 kb on + strand, within GFF644 at 642.677 kb on - strand, within GFF644 at 642.684 kb on - strand, within GFF644 at 642.684 kb on - strand, within GFF644 at 642.723 kb on + strand, within GFF644 at 642.733 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 640,409 - +0.8 640,411 + -2.2 640,411 + +0.0 640,411 + +0.0 640,411 + -0.5 640,417 + +2.2 640,419 - -0.6 640,443 + -0.7 640,443 + +0.4 640,451 + -0.2 640,451 - -0.7 640,452 - -0.3 640,453 + -0.3 640,453 + -1.4 640,459 - -1.6 640,461 - -2.5 640,474 + -0.5 640,474 + -0.0 640,474 + -1.8 640,474 + +0.4 640,474 + +1.4 640,480 + -1.2 640,482 - +0.4 640,482 - -1.3 640,482 - +1.5 640,482 - -1.5 640,482 - +0.0 640,528 - +1.5 640,554 - -1.0 640,588 - -0.5 640,600 + -0.8 640,608 - -0.8 640,612 + -0.8 640,620 - +0.2 640,620 - +0.5 640,620 - -1.7 640,620 - -0.7 640,629 + -0.3 640,639 + -0.8 640,639 + +0.5 640,639 + +0.8 640,639 + -1.6 640,639 + -3.1 640,639 + -0.9 640,639 + -0.9 640,639 + -2.9 640,639 + +0.3 640,641 + -0.7 640,644 + -0.6 640,647 - -1.9 640,647 - +0.1 640,647 - -0.3 640,647 - +0.8 640,665 + -1.1 640,667 - +0.2 640,667 - -0.6 640,673 - +1.0 640,685 - +0.4 640,704 - +0.6 640,731 + GFF642 0.12 -2.8 640,739 - GFF642 0.14 -1.9 640,739 - GFF642 0.14 +0.0 640,739 - GFF642 0.14 +0.0 640,795 + GFF642 0.23 +1.4 640,795 + GFF642 0.23 -0.3 640,804 + GFF642 0.24 +0.1 640,809 + GFF642 0.25 +0.3 640,819 + GFF642 0.27 +0.4 640,825 - GFF642 0.28 +0.8 640,832 + GFF642 0.29 -0.1 640,837 + GFF642 0.30 +0.1 640,837 + GFF642 0.30 +0.4 640,840 - GFF642 0.30 -0.1 640,845 - GFF642 0.31 -0.5 640,845 - GFF642 0.31 -0.1 640,845 - GFF642 0.31 +0.5 640,845 - GFF642 0.31 -1.5 640,845 - GFF642 0.31 +0.0 640,873 + GFF642 0.36 +1.5 640,902 + GFF642 0.40 -2.4 640,912 + GFF642 0.42 -0.8 640,913 + GFF642 0.42 +0.9 640,917 + GFF642 0.43 -2.1 640,919 + GFF642 0.43 -0.2 640,919 + GFF642 0.43 +0.8 640,927 - GFF642 0.45 +0.0 640,935 - GFF642 0.46 -2.3 640,935 - GFF642 0.46 -0.8 640,935 - GFF642 0.46 -0.3 640,935 - GFF642 0.46 +0.4 640,942 - GFF642 0.47 -1.5 640,955 - GFF642 0.49 -0.8 640,957 + GFF642 0.50 +0.3 640,965 - GFF642 0.51 +1.7 640,968 + GFF642 0.51 -0.9 640,979 + GFF642 0.53 -0.9 640,989 - GFF642 0.55 +1.2 641,002 - GFF642 0.57 -0.3 641,002 - GFF642 0.57 -1.0 641,002 - GFF642 0.57 -3.1 641,004 + GFF642 0.57 +0.0 641,076 + GFF642 0.69 +0.5 641,084 - GFF642 0.70 -1.6 641,086 + GFF642 0.71 -0.6 641,094 - GFF642 0.72 +1.4 641,103 - GFF642 0.74 +0.4 641,107 - GFF642 0.74 -1.1 641,110 - GFF642 0.75 -0.7 641,110 - GFF642 0.75 +0.8 641,154 - GFF642 0.82 -0.9 641,168 + GFF642 0.84 -0.8 641,230 + -0.2 641,263 - -0.6 641,356 + -2.4 641,356 + +0.4 641,356 + -0.3 641,356 + -2.1 641,356 + -2.2 641,356 + -1.2 641,364 - -0.5 641,364 - -1.6 641,364 - -0.8 641,364 - -0.8 641,364 - +0.6 641,364 - -0.1 641,364 - -0.4 641,364 - -0.4 641,364 - +0.1 641,364 - +0.5 641,364 - +0.5 641,385 - +0.8 641,402 - +0.4 641,404 + -2.1 641,404 + -2.0 641,412 - -1.2 641,412 - +0.2 641,412 - -2.3 641,437 + -0.4 641,447 + GFF643 0.11 +0.8 641,465 - GFF643 0.16 -1.6 641,473 + GFF643 0.18 -0.3 641,473 + GFF643 0.18 +0.9 641,479 + GFF643 0.20 -1.5 641,481 - GFF643 0.20 +0.8 641,489 + GFF643 0.22 -1.5 641,489 + GFF643 0.22 +0.4 641,497 - GFF643 0.24 -0.1 641,497 - GFF643 0.24 +0.9 641,497 - GFF643 0.24 +0.8 641,504 - GFF643 0.26 +0.2 641,511 + GFF643 0.28 +0.4 641,513 + GFF643 0.29 -0.3 641,513 + GFF643 0.29 -0.7 641,521 - GFF643 0.31 -0.5 641,540 + GFF643 0.36 -1.7 641,540 + GFF643 0.36 +1.2 641,547 - GFF643 0.38 -1.3 641,548 - GFF643 0.38 -1.1 641,559 + GFF643 0.41 +0.0 641,559 + GFF643 0.41 -0.0 641,559 + GFF643 0.41 -0.3 641,567 - GFF643 0.43 -2.1 641,567 - GFF643 0.43 -1.0 641,612 - GFF643 0.55 +0.4 641,631 + GFF643 0.60 -1.8 641,631 + GFF643 0.60 -0.9 641,666 + GFF643 0.70 +0.1 641,672 + GFF643 0.72 -0.5 641,680 - GFF643 0.74 +0.4 641,699 + GFF643 0.79 -1.3 641,707 - GFF643 0.81 -0.3 641,713 + GFF643 0.83 -0.2 641,713 + GFF643 0.83 +0.2 641,728 + GFF643 0.87 -1.3 641,731 - GFF643 0.87 +0.1 641,734 + GFF643 0.88 +0.1 641,734 + GFF643 0.88 -0.8 641,734 + GFF643 0.88 -2.6 641,734 + GFF643 0.88 +0.4 641,734 + GFF643 0.88 -1.1 641,734 + GFF643 0.88 -0.3 641,734 + GFF643 0.88 -0.3 641,734 + GFF643 0.88 +0.8 641,734 + GFF643 0.88 -1.1 641,734 + GFF643 0.88 -0.3 641,734 + GFF643 0.88 -0.0 641,734 + GFF643 0.88 -0.2 641,734 + GFF643 0.88 -1.7 641,734 + GFF643 0.88 -2.3 641,734 + GFF643 0.88 -0.2 641,734 + GFF643 0.88 +1.7 641,734 + GFF643 0.88 +0.2 641,734 + GFF643 0.88 +0.8 641,734 + GFF643 0.88 +0.8 641,734 + GFF643 0.88 -1.3 641,734 + GFF643 0.88 -0.1 641,734 + GFF643 0.88 +0.4 641,734 + GFF643 0.88 +0.7 641,736 + GFF643 0.89 -0.2 641,742 - -1.1 641,742 - -0.9 641,742 - -2.1 641,742 - -1.5 641,742 - -0.6 641,742 - -1.1 641,742 - -1.5 641,742 - -0.3 641,742 - -0.3 641,742 - -2.7 641,742 - -0.2 641,742 - +0.3 641,742 - -0.3 641,742 - -0.2 641,742 - +0.2 641,742 - -0.2 641,742 - -2.2 641,742 - +0.1 641,742 - -1.1 641,742 - +1.2 641,766 - +0.2 641,766 - -1.2 641,766 - +0.1 641,766 - -0.2 641,819 - -1.9 641,848 - +0.2 641,848 - -0.7 641,876 + -0.3 641,894 + -1.0 641,956 - -0.3 642,004 + -0.3 642,085 - GFF644 0.15 -1.6 642,147 - GFF644 0.22 -2.1 642,197 - GFF644 0.28 +0.2 642,222 + GFF644 0.31 -1.8 642,244 + GFF644 0.33 -1.2 642,270 - GFF644 0.36 -0.9 642,322 + GFF644 0.42 -0.2 642,349 - GFF644 0.46 +0.5 642,349 - GFF644 0.46 -1.8 642,349 - GFF644 0.46 -1.8 642,395 - GFF644 0.51 -1.3 642,405 - GFF644 0.52 -1.8 642,500 - GFF644 0.63 -1.2 642,515 + GFF644 0.65 -2.0 642,520 + GFF644 0.65 -1.6 642,528 + GFF644 0.66 -0.8 642,528 - GFF644 0.66 -0.0 642,663 + GFF644 0.82 -1.2 642,664 + GFF644 0.82 -2.3 642,672 - GFF644 0.83 -1.2 642,676 + GFF644 0.83 -1.5 642,677 - GFF644 0.84 -0.3 642,684 - GFF644 0.84 -1.2 642,684 - GFF644 0.84 -1.8 642,723 + GFF644 0.89 -1.1 642,733 + -1.1
Or see this region's nucleotide sequence