Strain Fitness in Sphingobium sp. HT1-2 around GFF64

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF61 and GFF62 are separated by 139 nucleotidesGFF62 and GFF63 are separated by 105 nucleotidesGFF63 and GFF64 are separated by 93 nucleotidesGFF64 and GFF65 are separated by 120 nucleotidesGFF65 and GFF66 are separated by 72 nucleotides GFF61 - hypothetical protein, at 53,166 to 53,657 GFF61 GFF62 - tRNA-Arg-ACG, at 53,797 to 53,873 GFF62 GFF63 - hypothetical protein, at 53,979 to 54,158 GFF63 GFF64 - hypothetical protein, at 54,252 to 54,434 GFF64 GFF65 - tRNA-Arg-ACG, at 54,555 to 54,631 GFF65 GFF66 - Cobyric acid synthase (EC 6.3.5.10), at 54,704 to 56,152 GFF66 Position (kb) 54 55Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 53.288 kb on - strand, within GFF61at 53.307 kb on + strand, within GFF61at 53.342 kb on - strand, within GFF61at 53.391 kb on + strand, within GFF61at 53.399 kb on - strand, within GFF61at 53.414 kb on - strand, within GFF61at 53.414 kb on - strand, within GFF61at 53.502 kb on - strand, within GFF61at 53.517 kb on - strand, within GFF61at 53.524 kb on + strand, within GFF61at 53.528 kb on + strand, within GFF61at 53.531 kb on - strand, within GFF61at 53.532 kb on - strand, within GFF61at 53.538 kb on + strand, within GFF61at 53.543 kb on + strand, within GFF61at 53.598 kb on + strand, within GFF61at 53.605 kb on + strand, within GFF61at 53.605 kb on - strand, within GFF61at 53.607 kb on + strand, within GFF61at 53.617 kb on + strandat 53.622 kb on - strandat 53.628 kb on - strandat 53.628 kb on - strandat 53.630 kb on + strandat 53.693 kb on + strandat 53.701 kb on - strandat 53.712 kb on + strandat 53.727 kb on - strandat 53.792 kb on - strandat 53.812 kb on - strand, within GFF62at 53.812 kb on - strand, within GFF62at 53.819 kb on - strand, within GFF62at 53.902 kb on - strandat 53.907 kb on + strandat 53.977 kb on - strandat 53.981 kb on + strandat 53.988 kb on + strandat 53.988 kb on + strandat 53.988 kb on + strandat 53.988 kb on + strandat 53.988 kb on + strandat 53.988 kb on + strandat 53.996 kb on - strandat 54.010 kb on + strand, within GFF63at 54.022 kb on + strand, within GFF63at 54.035 kb on + strand, within GFF63at 54.035 kb on + strand, within GFF63at 54.035 kb on + strand, within GFF63at 54.043 kb on - strand, within GFF63at 54.044 kb on - strand, within GFF63at 54.075 kb on + strand, within GFF63at 54.092 kb on + strand, within GFF63at 54.105 kb on + strand, within GFF63at 54.113 kb on - strand, within GFF63at 54.113 kb on - strand, within GFF63at 54.119 kb on + strand, within GFF63at 54.119 kb on + strand, within GFF63at 54.122 kb on - strand, within GFF63at 54.127 kb on - strand, within GFF63at 54.159 kb on + strandat 54.176 kb on - strandat 54.198 kb on + strandat 54.211 kb on + strandat 54.259 kb on + strandat 54.259 kb on + strandat 54.262 kb on - strandat 54.301 kb on - strand, within GFF64at 54.337 kb on - strand, within GFF64at 54.337 kb on - strand, within GFF64at 54.367 kb on - strand, within GFF64at 54.369 kb on + strand, within GFF64at 54.374 kb on + strand, within GFF64at 54.428 kb on + strandat 54.436 kb on - strandat 54.532 kb on + strandat 54.548 kb on + strandat 54.715 kb on - strandat 54.727 kb on - strandat 54.794 kb on + strandat 54.860 kb on + strand, within GFF66at 54.876 kb on - strand, within GFF66at 54.885 kb on - strand, within GFF66at 54.929 kb on + strand, within GFF66at 54.947 kb on - strand, within GFF66at 54.956 kb on + strand, within GFF66at 54.960 kb on + strand, within GFF66at 55.015 kb on - strand, within GFF66at 55.020 kb on + strand, within GFF66at 55.038 kb on + strand, within GFF66at 55.073 kb on - strand, within GFF66at 55.073 kb on - strand, within GFF66at 55.073 kb on - strand, within GFF66at 55.075 kb on + strand, within GFF66at 55.075 kb on + strand, within GFF66at 55.075 kb on + strand, within GFF66at 55.075 kb on + strand, within GFF66at 55.083 kb on - strand, within GFF66at 55.083 kb on - strand, within GFF66at 55.083 kb on - strand, within GFF66at 55.083 kb on - strand, within GFF66at 55.083 kb on - strand, within GFF66at 55.090 kb on - strand, within GFF66at 55.097 kb on + strand, within GFF66at 55.199 kb on + strand, within GFF66at 55.209 kb on + strand, within GFF66at 55.209 kb on + strand, within GFF66at 55.217 kb on - strand, within GFF66at 55.217 kb on - strand, within GFF66at 55.217 kb on - strand, within GFF66at 55.217 kb on - strand, within GFF66at 55.230 kb on + strand, within GFF66at 55.252 kb on + strand, within GFF66at 55.252 kb on + strand, within GFF66at 55.260 kb on - strand, within GFF66at 55.289 kb on - strand, within GFF66at 55.321 kb on + strand, within GFF66at 55.327 kb on + strand, within GFF66at 55.346 kb on - strand, within GFF66at 55.356 kb on - strand, within GFF66at 55.389 kb on - strand, within GFF66at 55.389 kb on - strand, within GFF66at 55.391 kb on + strand, within GFF66at 55.428 kb on - strand, within GFF66at 55.428 kb on - strand, within GFF66

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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53,288 - GFF61 0.25 -0.2
53,307 + GFF61 0.29 -0.0
53,342 - GFF61 0.36 -0.3
53,391 + GFF61 0.46 -0.9
53,399 - GFF61 0.47 -0.8
53,414 - GFF61 0.50 +0.1
53,414 - GFF61 0.50 -0.9
53,502 - GFF61 0.68 +0.1
53,517 - GFF61 0.71 -0.7
53,524 + GFF61 0.73 -0.2
53,528 + GFF61 0.74 -0.3
53,531 - GFF61 0.74 -1.6
53,532 - GFF61 0.74 -0.2
53,538 + GFF61 0.76 +1.0
53,543 + GFF61 0.77 -0.6
53,598 + GFF61 0.88 -0.3
53,605 + GFF61 0.89 -1.3
53,605 - GFF61 0.89 -0.6
53,607 + GFF61 0.90 -1.2
53,617 + +0.2
53,622 - -1.8
53,628 - -1.2
53,628 - +0.4
53,630 + +0.7
53,693 + +1.6
53,701 - -0.8
53,712 + -2.9
53,727 - -0.4
53,792 - -0.1
53,812 - GFF62 0.19 +0.5
53,812 - GFF62 0.19 -0.7
53,819 - GFF62 0.29 +1.8
53,902 - -1.5
53,907 + +0.6
53,977 - +1.0
53,981 + -0.4
53,988 + +0.4
53,988 + -0.0
53,988 + +0.1
53,988 + +0.4
53,988 + -1.1
53,988 + -0.4
53,996 - -0.5
54,010 + GFF63 0.17 -0.0
54,022 + GFF63 0.24 +0.2
54,035 + GFF63 0.31 +0.5
54,035 + GFF63 0.31 -0.4
54,035 + GFF63 0.31 -0.7
54,043 - GFF63 0.36 +1.5
54,044 - GFF63 0.36 +0.6
54,075 + GFF63 0.53 -0.4
54,092 + GFF63 0.63 -0.8
54,105 + GFF63 0.70 -0.0
54,113 - GFF63 0.74 -1.2
54,113 - GFF63 0.74 -0.5
54,119 + GFF63 0.78 -0.6
54,119 + GFF63 0.78 +1.2
54,122 - GFF63 0.79 -0.1
54,127 - GFF63 0.82 +0.2
54,159 + +0.3
54,176 - +1.1
54,198 + +0.2
54,211 + -0.6
54,259 + -0.7
54,259 + +0.2
54,262 - -1.1
54,301 - GFF64 0.27 -1.4
54,337 - GFF64 0.46 -0.4
54,337 - GFF64 0.46 -0.5
54,367 - GFF64 0.63 -1.1
54,369 + GFF64 0.64 +0.1
54,374 + GFF64 0.67 +0.8
54,428 + -0.7
54,436 - -0.9
54,532 + -0.4
54,548 + -2.2
54,715 - -2.1
54,727 - -1.7
54,794 + -1.8
54,860 + GFF66 0.11 -1.4
54,876 - GFF66 0.12 -0.6
54,885 - GFF66 0.12 -0.6
54,929 + GFF66 0.16 -1.7
54,947 - GFF66 0.17 -1.2
54,956 + GFF66 0.17 -1.8
54,960 + GFF66 0.18 -0.8
55,015 - GFF66 0.21 -1.4
55,020 + GFF66 0.22 -1.6
55,038 + GFF66 0.23 -0.5
55,073 - GFF66 0.25 -2.2
55,073 - GFF66 0.25 -2.4
55,073 - GFF66 0.25 -0.8
55,075 + GFF66 0.26 -0.5
55,075 + GFF66 0.26 -0.7
55,075 + GFF66 0.26 -0.4
55,075 + GFF66 0.26 -1.9
55,083 - GFF66 0.26 -1.5
55,083 - GFF66 0.26 -1.9
55,083 - GFF66 0.26 -1.6
55,083 - GFF66 0.26 -1.4
55,083 - GFF66 0.26 -2.3
55,090 - GFF66 0.27 -1.4
55,097 + GFF66 0.27 -1.0
55,199 + GFF66 0.34 -1.8
55,209 + GFF66 0.35 -2.0
55,209 + GFF66 0.35 -1.2
55,217 - GFF66 0.35 -2.0
55,217 - GFF66 0.35 -1.2
55,217 - GFF66 0.35 -1.4
55,217 - GFF66 0.35 -1.4
55,230 + GFF66 0.36 -1.2
55,252 + GFF66 0.38 -2.6
55,252 + GFF66 0.38 -1.5
55,260 - GFF66 0.38 +0.1
55,289 - GFF66 0.40 -2.8
55,321 + GFF66 0.43 -2.9
55,327 + GFF66 0.43 -1.2
55,346 - GFF66 0.44 -1.4
55,356 - GFF66 0.45 -2.3
55,389 - GFF66 0.47 -0.5
55,389 - GFF66 0.47 -1.7
55,391 + GFF66 0.47 -1.4
55,428 - GFF66 0.50 +0.2
55,428 - GFF66 0.50 -0.7

Or see this region's nucleotide sequence