Strain Fitness in Sphingobium sp. HT1-2 around GFF5316

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,308,794	+		GFF5315	0.38	-0.0
5,308,830	+		GFF5315	0.41	+0.6
5,308,840	+		GFF5315	0.41	-0.6
5,308,840	+		GFF5315	0.41	-1.4
5,308,840	+		GFF5315	0.41	+0.9
5,308,840	+		GFF5315	0.41	-2.5
5,308,840	+		GFF5315	0.41	+0.1
5,308,843	-		GFF5315	0.42	-1.2
5,308,843	-		GFF5315	0.42	+0.9
5,308,850	+		GFF5315	0.42	+0.4
5,308,850	+		GFF5315	0.42	-0.3
5,308,890	-		GFF5315	0.45	-0.9
5,308,895	-		GFF5315	0.45	+1.0
5,308,905	+		GFF5315	0.46	+1.0
5,308,905	+		GFF5315	0.46	+0.5
5,308,905	+		GFF5315	0.46	-0.2
5,308,905	+		GFF5315	0.46	+1.0
5,308,913	-		GFF5315	0.46	-0.0
5,308,913	-		GFF5315	0.46	-1.5
5,308,913	-		GFF5315	0.46	-1.3
5,308,913	-		GFF5315	0.46	+0.0
5,308,913	-		GFF5315	0.46	+0.9
5,308,921	+		GFF5315	0.47	-1.0
5,308,921	+		GFF5315	0.47	-2.4
5,308,938	+		GFF5315	0.48	+1.1
5,308,957	-		GFF5315	0.49	+0.4
5,308,957	-		GFF5315	0.49	+0.9
5,308,991	+		GFF5315	0.52	-1.1
5,309,001	+		GFF5315	0.52	+1.2
5,309,001	+		GFF5315	0.52	+1.0
5,309,009	-		GFF5315	0.53	-0.5
5,309,012	+		GFF5315	0.53	+0.4
5,309,022	+		GFF5315	0.54	-1.5
5,309,022	+		GFF5315	0.54	-0.5
5,309,022	+		GFF5315	0.54	+0.5
5,309,022	+		GFF5315	0.54	-0.0
5,309,022	+		GFF5315	0.54	-0.8
5,309,029	+		GFF5315	0.54	-2.0
5,309,030	-		GFF5315	0.54	-0.4
5,309,030	-		GFF5315	0.54	+0.1
5,309,030	-		GFF5315	0.54	-0.5
5,309,030	-		GFF5315	0.54	-0.1
5,309,030	-		GFF5315	0.54	+0.9
5,309,056	+		GFF5315	0.56	+1.0
5,309,056	+		GFF5315	0.56	-1.4
5,309,071	+		GFF5315	0.57	-0.0
5,309,080	-		GFF5315	0.57	+1.1
5,309,086	+		GFF5315	0.58	-0.2
5,309,094	-		GFF5315	0.58	+1.3
5,309,156	-		GFF5315	0.63	-0.8
5,309,169	-		GFF5315	0.63	-0.9
5,309,180	+		GFF5315	0.64	+0.3
5,309,188	+		GFF5315	0.65	+1.0
5,309,196	-		GFF5315	0.65	-0.6
5,309,196	-		GFF5315	0.65	+0.4
5,309,196	-		GFF5315	0.65	-0.8
5,309,216	-		GFF5315	0.67	-0.2
5,309,216	-		GFF5315	0.67	-0.1
5,309,216	-		GFF5315	0.67	+0.0
5,309,219	+		GFF5315	0.67	-1.2
5,309,224	+		GFF5315	0.67	-0.2
5,309,234	-		GFF5315	0.68	-0.0
5,309,234	-		GFF5315	0.68	-0.1
5,309,237	+		GFF5315	0.68	-1.0
5,309,245	-		GFF5315	0.68	+0.0
5,309,263	+		GFF5315	0.70	+0.2
5,309,271	-		GFF5315	0.70	-1.1
5,309,320	+		GFF5315	0.73	-0.7
5,309,323	-		GFF5315	0.74	+1.2
5,309,325	+		GFF5315	0.74	-0.4
5,309,332	+		GFF5315	0.74	-0.4
5,309,338	-		GFF5315	0.75	+1.3
5,309,344	+		GFF5315	0.75	+1.4
5,309,350	+		GFF5315	0.75	+0.7
5,309,365	-		GFF5315	0.76	+0.2
5,309,367	+		GFF5315	0.77	+1.6
5,309,376	+		GFF5315	0.77	+1.1
5,309,384	-		GFF5315	0.78	-0.9
5,309,412	+		GFF5315	0.80	-0.5
5,309,502	+		GFF5315	0.86	-0.7
5,309,519	-		GFF5315	0.87	+0.0
5,309,591	-				+0.8
5,309,591	-				-0.2
5,309,597	+				+0.7
5,309,605	-				-1.8
5,309,610	-				-0.3
5,309,677	+				-1.4
5,309,677	+				-0.5
5,309,677	+				+1.1
5,309,677	+				-0.2
5,309,685	-				+0.9
5,309,685	-				+0.5
5,309,685	-				+0.2
5,309,694	+				-0.2
5,309,706	+				+1.0
5,309,713	-				+0.2
5,309,735	-				+0.4
5,309,735	-				+0.3
5,309,736	-				+0.9
5,309,760	+				-0.2
5,309,760	+				-0.6
5,309,768	-				-0.6
5,309,768	-				-1.2
5,309,768	-				-0.1
5,309,768	-				+0.9
5,309,768	-				+0.1
5,309,777	+				+0.9
5,309,798	+				+0.9
5,309,806	-				-1.8
5,309,806	-				+0.3
5,309,808	+				-0.7
5,309,833	-				-0.6
5,309,843	+				+0.8
5,309,858	+				+0.0
5,309,858	+				+0.4
5,309,866	-				+0.6
5,309,872	-				-0.6
5,309,886	-				+1.6
5,309,897	+				+0.3
5,309,906	+				+0.8
5,309,911	+				-2.3
5,309,911	+				-0.1
5,309,914	-				-0.8
5,309,914	-				+1.2
5,309,919	-				+0.1
5,309,919	-				-0.4
5,309,919	-				-1.8
5,309,919	-				-2.0
5,309,921	+				+0.3
5,309,929	-				+0.8
5,309,929	-				-0.2
5,309,929	-				-0.2
5,309,929	-				+0.0
5,309,939	+		GFF5316	0.10	-2.3
5,309,940	+		GFF5316	0.10	+0.4
5,309,949	+		GFF5316	0.11	-0.1
5,309,949	+		GFF5316	0.11	+0.6
5,309,949	+		GFF5316	0.11	+0.6
5,309,952	-		GFF5316	0.11	+0.1
5,309,957	-		GFF5316	0.11	+1.5
5,309,957	-		GFF5316	0.11	+0.5
5,309,957	-		GFF5316	0.11	-0.4
5,309,989	+		GFF5316	0.14	-0.1
5,310,007	+		GFF5316	0.15	-1.0
5,310,007	+		GFF5316	0.15	-0.2
5,310,012	+		GFF5316	0.15	+0.0
5,310,044	+		GFF5316	0.17	+0.4
5,310,085	-		GFF5316	0.20	+0.2
5,310,092	+		GFF5316	0.21	-0.8
5,310,094	+		GFF5316	0.21	-0.7
5,310,102	+		GFF5316	0.21	+1.1
5,310,102	+		GFF5316	0.21	+1.4
5,310,110	-		GFF5316	0.22	+0.2
5,310,123	-		GFF5316	0.23	-0.4
5,310,137	+		GFF5316	0.24	+0.4
5,310,137	+		GFF5316	0.24	-0.7
5,310,137	+		GFF5316	0.24	+0.6
5,310,137	+		GFF5316	0.24	-0.1
5,310,137	+		GFF5316	0.24	+0.5
5,310,137	+		GFF5316	0.24	+1.1
5,310,142	+		GFF5316	0.24	-0.0
5,310,145	-		GFF5316	0.24	-0.4
5,310,145	-		GFF5316	0.24	-0.9
5,310,145	-		GFF5316	0.24	-0.7
5,310,145	-		GFF5316	0.24	+1.2
5,310,145	-		GFF5316	0.24	-1.6
5,310,145	-		GFF5316	0.24	-0.9
5,310,145	-		GFF5316	0.24	+1.0
5,310,145	-		GFF5316	0.24	-0.6
5,310,145	-		GFF5316	0.24	-0.2
5,310,161	+		GFF5316	0.25	+0.1
5,310,161	+		GFF5316	0.25	-0.3
5,310,161	+		GFF5316	0.25	-2.5
5,310,191	+		GFF5316	0.27	-0.5
5,310,199	-		GFF5316	0.28	-1.3
5,310,228	+		GFF5316	0.30	-1.6
5,310,234	-		GFF5316	0.30	-0.6
5,310,236	-		GFF5316	0.30	-1.6
5,310,236	-		GFF5316	0.30	+0.9
5,310,236	-		GFF5316	0.30	-0.8
5,310,236	-		GFF5316	0.30	-0.5
5,310,236	-		GFF5316	0.30	+0.9
5,310,256	+		GFF5316	0.32	-0.3
5,310,256	+		GFF5316	0.32	+1.2
5,310,256	+		GFF5316	0.32	+0.1
5,310,302	-		GFF5316	0.35	-2.1
5,310,359	+		GFF5316	0.39	+0.9
5,310,372	+		GFF5316	0.40	+0.1
5,310,387	+		GFF5316	0.41	+0.1
5,310,414	+		GFF5316	0.43	-0.9
5,310,419	+		GFF5316	0.43	-1.0
5,310,419	+		GFF5316	0.43	+0.5
5,310,421	+		GFF5316	0.43	-0.8
5,310,427	-		GFF5316	0.43	-0.0
5,310,448	+		GFF5316	0.45	-1.6
5,310,450	-		GFF5316	0.45	-1.1
5,310,450	-		GFF5316	0.45	-1.7
5,310,452	+		GFF5316	0.45	-0.8
5,310,460	-		GFF5316	0.46	+0.1
5,310,474	+		GFF5316	0.47	+0.4
5,310,474	+		GFF5316	0.47	-1.1
5,310,475	-		GFF5316	0.47	+1.2
5,310,482	-		GFF5316	0.47	-0.4
5,310,482	-		GFF5316	0.47	+0.7
5,310,482	-		GFF5316	0.47	-0.7
5,310,499	-		GFF5316	0.48	+0.4
5,310,502	+		GFF5316	0.49	+0.8
5,310,503	+		GFF5316	0.49	+1.1
5,310,513	-		GFF5316	0.49	+0.4
5,310,538	+		GFF5316	0.51	+0.1
5,310,540	+		GFF5316	0.51	-2.4
5,310,555	+		GFF5316	0.52	-0.9
5,310,555	+		GFF5316	0.52	-1.7
5,310,555	+		GFF5316	0.52	-2.6
5,310,555	+		GFF5316	0.52	+0.0
5,310,555	+		GFF5316	0.52	-0.6
5,310,555	+		GFF5316	0.52	-1.7
5,310,558	-		GFF5316	0.52	+1.2
5,310,563	-		GFF5316	0.53	-1.7
5,310,563	-		GFF5316	0.53	-0.3
5,310,563	-		GFF5316	0.53	+0.2
5,310,563	-		GFF5316	0.53	+0.4
5,310,603	-		GFF5316	0.55	+0.1
5,310,638	+		GFF5316	0.58	+0.1
5,310,665	+		GFF5316	0.60	+1.2
5,310,667	+		GFF5316	0.60	+0.9
5,310,724	-		GFF5316	0.64	+0.2
5,310,724	-		GFF5316	0.64	-0.4
5,310,757	-		GFF5316	0.66	+0.0
5,310,758	+		GFF5316	0.66	-0.7
5,310,790	+		GFF5316	0.68	-0.7
5,310,791	+		GFF5316	0.68	+0.6
5,310,802	+		GFF5316	0.69	+0.6
5,310,803	+		GFF5316	0.69	-0.8
5,310,846	+		GFF5316	0.72	+0.5
5,310,846	+		GFF5316	0.72	+0.0
5,310,860	+		GFF5316	0.73	-0.8
5,310,860	+		GFF5316	0.73	-0.5
5,310,860	+		GFF5316	0.73	+0.3
5,310,868	-		GFF5316	0.74	-1.1
5,310,868	-		GFF5316	0.74	-0.4
5,310,868	-		GFF5316	0.74	+1.1
5,310,868	-		GFF5316	0.74	-0.7
5,310,904	-		GFF5316	0.76	-0.3
5,310,909	+		GFF5316	0.76	+0.4
5,310,935	+		GFF5316	0.78	-0.5
5,310,935	+		GFF5316	0.78	+2.5
5,310,943	-		GFF5316	0.79	-0.5
5,310,943	-		GFF5316	0.79	-1.0
5,310,943	-		GFF5316	0.79	+1.0
5,310,975	+		GFF5316	0.81	-0.6
5,310,975	+		GFF5316	0.81	-1.1
5,310,975	+		GFF5316	0.81	-0.3
5,310,975	+		GFF5316	0.81	+0.2
5,310,975	+		GFF5316	0.81	+0.9
5,310,975	+		GFF5316	0.81	+0.9
5,310,977	+		GFF5316	0.81	+0.0
5,310,978	-		GFF5316	0.81	+0.6
5,310,982	+		GFF5316	0.81	-0.0
5,310,983	-		GFF5316	0.81	-0.3
5,310,983	-		GFF5316	0.81	+0.8
5,310,983	-		GFF5316	0.81	+0.1
5,310,983	-		GFF5316	0.81	+0.0
5,310,983	-		GFF5316	0.81	+1.0
5,310,983	-		GFF5316	0.81	+0.4
5,310,985	-		GFF5316	0.82	-0.7
5,310,990	-		GFF5316	0.82	-1.8
5,310,990	-		GFF5316	0.82	+1.6
5,311,023	+		GFF5316	0.84	-0.0
5,311,029	-		GFF5316	0.85	-0.0
5,311,066	-		GFF5316	0.87	-1.0
5,311,066	-		GFF5316	0.87	-0.4
5,311,080	+		GFF5316	0.88	-0.9
5,311,086	-		GFF5316	0.88	-0.5
5,311,113	-				+0.9
5,311,132	-				+0.0
5,311,137	+				-1.0
5,311,154	+				-0.4
5,311,234	+				+0.4
5,311,251	-				+0.8
5,311,289	-				+0.6
5,311,294	-				-0.8
5,311,302	+				-3.2
5,311,310	-				+0.4
5,311,325	+		GFF5317	0.11	-0.4
5,311,325	+		GFF5317	0.11	-1.6
5,311,353	-		GFF5317	0.14	+0.4
5,311,416	+		GFF5317	0.21	-0.5
5,311,437	+		GFF5317	0.24	+0.3
5,311,437	+		GFF5317	0.24	-0.5
5,311,477	-		GFF5317	0.28	+0.4
5,311,478	-		GFF5317	0.28	-0.7
5,311,478	-		GFF5317	0.28	-0.8
5,311,478	-		GFF5317	0.28	+0.6
5,311,507	+		GFF5317	0.32	+0.2
5,311,509	-		GFF5317	0.32	-0.1
5,311,563	-		GFF5317	0.38	-0.6
5,311,600	-		GFF5317	0.42	+1.1
5,311,602	-		GFF5317	0.43	-1.0
5,311,602	-		GFF5317	0.43	-1.1
5,311,611	+		GFF5317	0.44	-1.7
5,311,667	-		GFF5317	0.50	-0.6
5,311,681	-		GFF5317	0.52	+1.2
5,311,681	-		GFF5317	0.52	+1.2
5,311,692	-		GFF5317	0.53	-1.3
5,311,700	-		GFF5317	0.54	+0.4
5,311,707	+		GFF5317	0.55	-0.1
5,311,761	+		GFF5317	0.61	+0.7
5,311,769	-		GFF5317	0.62	-1.6
5,311,772	-		GFF5317	0.62	+0.9
5,311,813	+		GFF5317	0.67	-0.7
5,311,820	-		GFF5317	0.68	+0.6
5,311,824	+		GFF5317	0.68	+0.7
5,311,844	-		GFF5317	0.71	+0.0
5,311,868	+		GFF5317	0.73	+1.2
5,311,868	+		GFF5317	0.73	-1.6
5,311,868	+		GFF5317	0.73	+0.3
5,311,868	+		GFF5317	0.73	+0.5
5,311,868	+		GFF5317	0.73	+0.5
5,311,868	+		GFF5317	0.73	+1.3
5,311,868	+		GFF5317	0.73	+1.1
5,311,874	-		GFF5317	0.74	+0.0
5,311,876	-		GFF5317	0.74	+0.0
5,311,876	-		GFF5317	0.74	+0.9
5,311,876	-		GFF5317	0.74	+1.1
5,311,876	-		GFF5317	0.74	+0.3
5,311,876	-		GFF5317	0.74	+0.4
5,311,876	-		GFF5317	0.74	-1.6
5,311,876	-		GFF5317	0.74	+0.1
5,311,876	-		GFF5317	0.74	-0.7
5,311,876	-		GFF5317	0.74	+1.2
5,311,876	-		GFF5317	0.74	+1.1
5,311,876	-		GFF5317	0.74	+0.2
5,311,876	-		GFF5317	0.74	+0.4
5,311,876	-		GFF5317	0.74	-0.3
5,311,876	-		GFF5317	0.74	+0.0
5,311,905	+		GFF5317	0.78	-0.1
5,311,908	-		GFF5317	0.78	+0.5
5,311,915	+		GFF5317	0.79	+0.8
5,311,916	+		GFF5317	0.79	-0.5
5,311,934	+		GFF5317	0.81	+0.7
5,311,943	-		GFF5317	0.82	-0.6
5,311,968	-		GFF5317	0.85	-1.3
5,312,013	-				-0.7
5,312,030	-				-0.0
5,312,059	+				+0.7
5,312,059	+				-0.6
5,312,067	+				-0.2
5,312,067	+				-0.3
5,312,067	+				-1.4
5,312,067	+				+0.4
5,312,067	+				+0.0
5,312,075	-				-0.4
5,312,075	-				+0.8
5,312,078	+				-0.4
5,312,078	+				+1.1
5,312,078	+				-0.2
5,312,114	+				-1.3
5,312,122	-				+0.9
5,312,122	-				+0.6
5,312,133	-				+0.0
5,312,148	-				-0.2
5,312,155	+				-2.1
5,312,163	-				-0.4
5,312,163	-				+0.9
5,312,200	+				-0.1
5,312,200	+				-0.6
5,312,200	-				-1.5
5,312,220	+				+0.3
5,312,220	-				+0.5
5,312,220	-				-1.6
5,312,220	-				+0.1
5,312,228	-				+0.3
5,312,228	-				-1.2
5,312,238	+		GFF5318	0.14	+1.3
5,312,246	+		GFF5318	0.17	+0.7