Strain Fitness in Sphingobium sp. HT1-2 around GFF53

Experiment: EMM_noCarbon with Sucrose and Putrescine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF52 and GFF53 are separated by 18 nucleotidesGFF53 and GFF54 are separated by 6 nucleotidesGFF54 and GFF55 are separated by 87 nucleotides GFF52 - Choloylglycine hydrolase (EC 3.5.1.24), at 41,978 to 43,033 GFF52 GFF53 - FIG00450481: hypothetical protein, at 43,052 to 43,858 GFF53 GFF54 - Peptidyl-tRNA hydrolase (EC 3.1.1.29), at 43,865 to 44,434 GFF54 GFF55 - LSU ribosomal protein L25p, at 44,522 to 45,133 GFF55 Position (kb) 43 44Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 42.096 kb on + strand, within GFF52at 42.102 kb on + strand, within GFF52at 42.103 kb on + strand, within GFF52at 42.112 kb on + strand, within GFF52at 42.136 kb on + strand, within GFF52at 42.136 kb on + strand, within GFF52at 42.136 kb on + strand, within GFF52at 42.136 kb on + strand, within GFF52at 42.144 kb on - strand, within GFF52at 42.144 kb on - strand, within GFF52at 42.144 kb on - strand, within GFF52at 42.144 kb on - strand, within GFF52at 42.156 kb on + strand, within GFF52at 42.156 kb on + strand, within GFF52at 42.164 kb on - strand, within GFF52at 42.176 kb on - strand, within GFF52at 42.178 kb on - strand, within GFF52at 42.180 kb on + strand, within GFF52at 42.195 kb on + strand, within GFF52at 42.255 kb on + strand, within GFF52at 42.259 kb on + strand, within GFF52at 42.264 kb on + strand, within GFF52at 42.264 kb on + strand, within GFF52at 42.264 kb on + strand, within GFF52at 42.267 kb on - strand, within GFF52at 42.269 kb on + strand, within GFF52at 42.272 kb on - strand, within GFF52at 42.272 kb on - strand, within GFF52at 42.272 kb on - strand, within GFF52at 42.335 kb on + strand, within GFF52at 42.335 kb on + strand, within GFF52at 42.343 kb on - strand, within GFF52at 42.365 kb on + strand, within GFF52at 42.396 kb on - strand, within GFF52at 42.398 kb on + strand, within GFF52at 42.409 kb on + strand, within GFF52at 42.468 kb on + strand, within GFF52at 42.475 kb on - strand, within GFF52at 42.483 kb on + strand, within GFF52at 42.558 kb on + strand, within GFF52at 42.609 kb on - strand, within GFF52at 42.643 kb on + strand, within GFF52at 42.655 kb on + strand, within GFF52at 42.655 kb on + strand, within GFF52at 42.655 kb on + strand, within GFF52at 42.670 kb on - strand, within GFF52at 42.674 kb on + strand, within GFF52at 42.692 kb on + strand, within GFF52at 42.692 kb on - strand, within GFF52at 42.709 kb on + strand, within GFF52at 42.711 kb on + strand, within GFF52at 42.724 kb on - strand, within GFF52at 42.728 kb on + strand, within GFF52at 42.728 kb on + strand, within GFF52at 42.728 kb on + strand, within GFF52at 42.728 kb on + strand, within GFF52at 42.728 kb on + strand, within GFF52at 42.736 kb on - strand, within GFF52at 42.736 kb on - strand, within GFF52at 42.736 kb on - strand, within GFF52at 42.736 kb on - strand, within GFF52at 42.737 kb on + strand, within GFF52at 42.741 kb on - strand, within GFF52at 42.767 kb on + strand, within GFF52at 42.796 kb on + strand, within GFF52at 42.804 kb on - strand, within GFF52at 42.804 kb on - strand, within GFF52at 42.804 kb on - strand, within GFF52at 42.804 kb on - strand, within GFF52at 42.804 kb on - strand, within GFF52at 42.810 kb on - strand, within GFF52at 42.825 kb on + strand, within GFF52at 42.835 kb on + strand, within GFF52at 42.835 kb on + strand, within GFF52at 42.835 kb on + strand, within GFF52at 42.855 kb on - strand, within GFF52at 42.855 kb on - strand, within GFF52at 42.882 kb on - strand, within GFF52at 42.883 kb on + strand, within GFF52at 42.894 kb on + strand, within GFF52at 42.894 kb on + strand, within GFF52at 42.894 kb on + strand, within GFF52at 42.895 kb on + strand, within GFF52at 42.895 kb on + strand, within GFF52at 42.903 kb on - strand, within GFF52at 42.909 kb on + strand, within GFF52at 42.909 kb on + strand, within GFF52at 42.909 kb on + strand, within GFF52at 42.909 kb on + strand, within GFF52at 42.909 kb on + strand, within GFF52at 42.917 kb on - strand, within GFF52at 42.917 kb on - strand, within GFF52at 42.917 kb on - strand, within GFF52at 42.917 kb on - strand, within GFF52at 42.936 kb on - strandat 42.939 kb on - strandat 42.948 kb on + strandat 42.950 kb on - strandat 42.956 kb on - strandat 42.956 kb on - strandat 42.956 kb on - strandat 42.974 kb on + strandat 42.977 kb on - strandat 42.977 kb on - strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.991 kb on + strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 42.999 kb on - strandat 43.004 kb on - strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.027 kb on + strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.035 kb on - strandat 43.040 kb on - strandat 43.045 kb on - strandat 43.045 kb on - strandat 43.064 kb on + strandat 43.072 kb on - strandat 43.072 kb on - strandat 43.081 kb on + strandat 43.084 kb on - strandat 43.103 kb on + strandat 43.162 kb on - strand, within GFF53at 43.167 kb on - strand, within GFF53at 43.167 kb on - strand, within GFF53at 43.181 kb on + strand, within GFF53at 43.181 kb on + strand, within GFF53at 43.181 kb on + strand, within GFF53at 43.181 kb on + strand, within GFF53at 43.181 kb on + strand, within GFF53at 43.189 kb on - strand, within GFF53at 43.195 kb on - strand, within GFF53at 43.210 kb on - strand, within GFF53at 43.217 kb on + strand, within GFF53at 43.220 kb on + strand, within GFF53at 43.234 kb on - strand, within GFF53at 43.236 kb on - strand, within GFF53at 43.291 kb on + strand, within GFF53at 43.296 kb on + strand, within GFF53at 43.301 kb on + strand, within GFF53at 43.301 kb on + strand, within GFF53at 43.304 kb on - strand, within GFF53at 43.309 kb on - strand, within GFF53at 43.318 kb on + strand, within GFF53at 43.321 kb on - strand, within GFF53at 43.326 kb on - strand, within GFF53at 43.326 kb on - strand, within GFF53at 43.327 kb on - strand, within GFF53at 43.338 kb on + strand, within GFF53at 43.346 kb on + strand, within GFF53at 43.354 kb on - strand, within GFF53at 43.363 kb on - strand, within GFF53at 43.364 kb on - strand, within GFF53at 43.374 kb on + strand, within GFF53at 43.382 kb on - strand, within GFF53at 43.386 kb on - strand, within GFF53at 43.407 kb on + strand, within GFF53at 43.407 kb on + strand, within GFF53at 43.407 kb on - strand, within GFF53at 43.414 kb on - strand, within GFF53at 43.415 kb on - strand, within GFF53at 43.426 kb on + strand, within GFF53at 43.436 kb on + strand, within GFF53at 43.449 kb on + strand, within GFF53at 43.465 kb on + strand, within GFF53at 43.475 kb on + strand, within GFF53at 43.492 kb on - strand, within GFF53at 43.516 kb on - strand, within GFF53at 43.516 kb on - strand, within GFF53at 43.518 kb on + strand, within GFF53at 43.518 kb on + strand, within GFF53at 43.544 kb on - strand, within GFF53at 43.544 kb on - strand, within GFF53at 43.549 kb on + strand, within GFF53at 43.549 kb on + strand, within GFF53at 43.549 kb on + strand, within GFF53at 43.551 kb on + strand, within GFF53at 43.553 kb on + strand, within GFF53at 43.557 kb on - strand, within GFF53at 43.557 kb on - strand, within GFF53at 43.559 kb on - strand, within GFF53at 43.559 kb on - strand, within GFF53at 43.578 kb on + strand, within GFF53at 43.586 kb on - strand, within GFF53at 43.594 kb on - strand, within GFF53at 43.622 kb on - strand, within GFF53at 43.642 kb on - strand, within GFF53at 43.645 kb on + strand, within GFF53at 43.645 kb on + strand, within GFF53at 43.659 kb on + strand, within GFF53at 43.659 kb on + strand, within GFF53at 43.689 kb on + strand, within GFF53at 43.704 kb on + strand, within GFF53at 43.704 kb on + strand, within GFF53at 43.704 kb on + strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.712 kb on - strand, within GFF53at 43.724 kb on + strand, within GFF53at 43.725 kb on + strand, within GFF53at 43.729 kb on + strand, within GFF53at 43.748 kb on + strand, within GFF53at 43.748 kb on + strand, within GFF53at 43.748 kb on + strand, within GFF53at 43.748 kb on + strand, within GFF53at 43.756 kb on - strand, within GFF53at 43.756 kb on - strand, within GFF53at 43.756 kb on - strand, within GFF53at 43.756 kb on - strand, within GFF53at 43.756 kb on - strand, within GFF53at 43.758 kb on + strand, within GFF53at 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.852 kb on + strandat 43.860 kb on - strandat 43.860 kb on - strandat 43.860 kb on - strandat 43.860 kb on - strandat 43.860 kb on - strandat 43.872 kb on + strandat 43.874 kb on - strandat 43.882 kb on + strandat 44.421 kb on + strandat 44.421 kb on + strandat 44.421 kb on + strandat 44.421 kb on + strandat 44.429 kb on - strandat 44.429 kb on - strandat 44.429 kb on - strandat 44.429 kb on - strandat 44.429 kb on - strandat 44.429 kb on - strandat 44.429 kb on - strandat 44.518 kb on - strandat 44.521 kb on - strandat 44.537 kb on - strandat 44.654 kb on - strand, within GFF55at 44.687 kb on - strand, within GFF55at 44.688 kb on - strand, within GFF55at 44.739 kb on - strand, within GFF55at 44.778 kb on - strand, within GFF55

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
remove
42,096 + GFF52 0.11 +1.7
42,102 + GFF52 0.12 +0.6
42,103 + GFF52 0.12 -0.0
42,112 + GFF52 0.13 -1.4
42,136 + GFF52 0.15 -0.2
42,136 + GFF52 0.15 +0.4
42,136 + GFF52 0.15 -1.2
42,136 + GFF52 0.15 +0.2
42,144 - GFF52 0.16 -0.4
42,144 - GFF52 0.16 +0.4
42,144 - GFF52 0.16 -0.8
42,144 - GFF52 0.16 +0.2
42,156 + GFF52 0.17 -0.6
42,156 + GFF52 0.17 +0.1
42,164 - GFF52 0.18 +0.2
42,176 - GFF52 0.19 -0.5
42,178 - GFF52 0.19 +0.2
42,180 + GFF52 0.19 -0.5
42,195 + GFF52 0.21 +0.5
42,255 + GFF52 0.26 -1.8
42,259 + GFF52 0.27 +0.7
42,264 + GFF52 0.27 +0.1
42,264 + GFF52 0.27 -0.4
42,264 + GFF52 0.27 -2.2
42,267 - GFF52 0.27 +0.4
42,269 + GFF52 0.28 -0.3
42,272 - GFF52 0.28 -0.6
42,272 - GFF52 0.28 -0.7
42,272 - GFF52 0.28 +0.3
42,335 + GFF52 0.34 -2.0
42,335 + GFF52 0.34 +1.3
42,343 - GFF52 0.35 -0.4
42,365 + GFF52 0.37 +0.1
42,396 - GFF52 0.40 +1.5
42,398 + GFF52 0.40 +0.9
42,409 + GFF52 0.41 -1.5
42,468 + GFF52 0.46 +0.4
42,475 - GFF52 0.47 -0.2
42,483 + GFF52 0.48 -0.5
42,558 + GFF52 0.55 -0.8
42,609 - GFF52 0.60 +0.5
42,643 + GFF52 0.63 -1.4
42,655 + GFF52 0.64 +0.4
42,655 + GFF52 0.64 +1.4
42,655 + GFF52 0.64 +0.5
42,670 - GFF52 0.66 +0.2
42,674 + GFF52 0.66 +0.3
42,692 + GFF52 0.68 -0.1
42,692 - GFF52 0.68 -0.8
42,709 + GFF52 0.69 -0.6
42,711 + GFF52 0.69 +0.8
42,724 - GFF52 0.71 +0.9
42,728 + GFF52 0.71 +0.5
42,728 + GFF52 0.71 +1.4
42,728 + GFF52 0.71 +0.2
42,728 + GFF52 0.71 -0.0
42,728 + GFF52 0.71 -0.7
42,736 - GFF52 0.72 +0.3
42,736 - GFF52 0.72 -3.0
42,736 - GFF52 0.72 -0.4
42,736 - GFF52 0.72 -0.6
42,737 + GFF52 0.72 +0.8
42,741 - GFF52 0.72 -0.5
42,767 + GFF52 0.75 -0.2
42,796 + GFF52 0.77 +1.4
42,804 - GFF52 0.78 -1.2
42,804 - GFF52 0.78 -0.2
42,804 - GFF52 0.78 +1.0
42,804 - GFF52 0.78 +0.8
42,804 - GFF52 0.78 -0.1
42,810 - GFF52 0.79 -0.6
42,825 + GFF52 0.80 -0.3
42,835 + GFF52 0.81 -0.2
42,835 + GFF52 0.81 -0.3
42,835 + GFF52 0.81 -0.2
42,855 - GFF52 0.83 -0.4
42,855 - GFF52 0.83 -1.1
42,882 - GFF52 0.86 +0.3
42,883 + GFF52 0.86 -0.0
42,894 + GFF52 0.87 -0.5
42,894 + GFF52 0.87 +0.9
42,894 + GFF52 0.87 -1.4
42,895 + GFF52 0.87 -0.5
42,895 + GFF52 0.87 -0.2
42,903 - GFF52 0.88 -0.1
42,909 + GFF52 0.88 +0.1
42,909 + GFF52 0.88 +0.4
42,909 + GFF52 0.88 +0.3
42,909 + GFF52 0.88 -0.1
42,909 + GFF52 0.88 -0.7
42,917 - GFF52 0.89 +1.0
42,917 - GFF52 0.89 -0.2
42,917 - GFF52 0.89 +0.3
42,917 - GFF52 0.89 +1.2
42,936 - -0.2
42,939 - -1.8
42,948 + +0.4
42,950 - -0.3
42,956 - -1.1
42,956 - -0.8
42,956 - -0.2
42,974 + -1.2
42,977 - +0.5
42,977 - +0.2
42,991 + -1.4
42,991 + -2.3
42,991 + -0.6
42,991 + +0.2
42,991 + -0.1
42,991 + -1.3
42,991 + -2.2
42,991 + +0.2
42,991 + +0.3
42,991 + +0.7
42,991 + -1.1
42,991 + -0.4
42,991 + -0.4
42,999 - +1.0
42,999 - -0.1
42,999 - +0.2
42,999 - +1.0
42,999 - -0.1
42,999 - +0.3
42,999 - +0.3
42,999 - +0.2
42,999 - -1.9
42,999 - -0.6
42,999 - +1.4
42,999 - -0.6
42,999 - +0.1
42,999 - -2.4
42,999 - -0.6
42,999 - +0.7
42,999 - +0.4
42,999 - -0.7
42,999 - +0.0
42,999 - -0.5
42,999 - -0.1
43,004 - +0.6
43,027 + -0.6
43,027 + -0.4
43,027 + +1.3
43,027 + -0.7
43,027 + -0.2
43,027 + +0.1
43,027 + +1.4
43,027 + +0.9
43,027 + +0.3
43,027 + -1.0
43,035 - -1.0
43,035 - -0.5
43,035 - -0.4
43,035 - -0.2
43,035 - +0.5
43,035 - +0.7
43,035 - -1.4
43,035 - -0.3
43,035 - -0.6
43,035 - +0.4
43,035 - +0.8
43,035 - -0.5
43,035 - -0.5
43,040 - -0.0
43,045 - +0.3
43,045 - -0.3
43,064 + +0.2
43,072 - +0.6
43,072 - +0.3
43,081 + -0.5
43,084 - +1.0
43,103 + -0.6
43,162 - GFF53 0.14 -2.7
43,167 - GFF53 0.14 -0.4
43,167 - GFF53 0.14 -0.3
43,181 + GFF53 0.16 +0.4
43,181 + GFF53 0.16 -0.3
43,181 + GFF53 0.16 -1.1
43,181 + GFF53 0.16 +1.0
43,181 + GFF53 0.16 -0.1
43,189 - GFF53 0.17 -0.1
43,195 - GFF53 0.18 +0.8
43,210 - GFF53 0.20 -0.3
43,217 + GFF53 0.20 +0.3
43,220 + GFF53 0.21 -0.4
43,234 - GFF53 0.23 -1.0
43,236 - GFF53 0.23 +0.1
43,291 + GFF53 0.30 +0.2
43,296 + GFF53 0.30 -0.6
43,301 + GFF53 0.31 -0.2
43,301 + GFF53 0.31 -1.8
43,304 - GFF53 0.31 +0.4
43,309 - GFF53 0.32 -0.4
43,318 + GFF53 0.33 +0.3
43,321 - GFF53 0.33 +2.2
43,326 - GFF53 0.34 +0.4
43,326 - GFF53 0.34 +1.1
43,327 - GFF53 0.34 +0.2
43,338 + GFF53 0.35 +1.0
43,346 + GFF53 0.36 +0.7
43,354 - GFF53 0.37 +0.3
43,363 - GFF53 0.39 -1.6
43,364 - GFF53 0.39 -0.1
43,374 + GFF53 0.40 -2.6
43,382 - GFF53 0.41 +1.1
43,386 - GFF53 0.41 -1.1
43,407 + GFF53 0.44 +0.3
43,407 + GFF53 0.44 -0.6
43,407 - GFF53 0.44 +0.8
43,414 - GFF53 0.45 +0.3
43,415 - GFF53 0.45 -0.5
43,426 + GFF53 0.46 +0.1
43,436 + GFF53 0.48 +0.1
43,449 + GFF53 0.49 -1.2
43,465 + GFF53 0.51 -0.5
43,475 + GFF53 0.52 -1.6
43,492 - GFF53 0.55 -0.2
43,516 - GFF53 0.57 +0.2
43,516 - GFF53 0.57 -1.1
43,518 + GFF53 0.58 -0.4
43,518 + GFF53 0.58 +0.1
43,544 - GFF53 0.61 +0.9
43,544 - GFF53 0.61 -1.5
43,549 + GFF53 0.62 -0.1
43,549 + GFF53 0.62 -1.1
43,549 + GFF53 0.62 +0.6
43,551 + GFF53 0.62 -0.2
43,553 + GFF53 0.62 +1.2
43,557 - GFF53 0.63 +1.8
43,557 - GFF53 0.63 -1.4
43,559 - GFF53 0.63 -1.6
43,559 - GFF53 0.63 -1.1
43,578 + GFF53 0.65 +0.2
43,586 - GFF53 0.66 -1.0
43,594 - GFF53 0.67 -1.1
43,622 - GFF53 0.71 -1.0
43,642 - GFF53 0.73 -0.2
43,645 + GFF53 0.73 -0.7
43,645 + GFF53 0.73 +0.9
43,659 + GFF53 0.75 +0.5
43,659 + GFF53 0.75 +1.4
43,689 + GFF53 0.79 +0.3
43,704 + GFF53 0.81 -0.3
43,704 + GFF53 0.81 -0.5
43,704 + GFF53 0.81 -1.4
43,712 - GFF53 0.82 -2.0
43,712 - GFF53 0.82 +0.2
43,712 - GFF53 0.82 +0.4
43,712 - GFF53 0.82 +0.2
43,712 - GFF53 0.82 -0.4
43,712 - GFF53 0.82 +1.0
43,712 - GFF53 0.82 -2.2
43,712 - GFF53 0.82 -1.9
43,712 - GFF53 0.82 -0.1
43,712 - GFF53 0.82 +0.5
43,724 + GFF53 0.83 +0.1
43,725 + GFF53 0.83 -0.4
43,729 + GFF53 0.84 -0.6
43,748 + GFF53 0.86 +1.4
43,748 + GFF53 0.86 -0.0
43,748 + GFF53 0.86 +0.2
43,748 + GFF53 0.86 +0.0
43,756 - GFF53 0.87 -0.1
43,756 - GFF53 0.87 -1.1
43,756 - GFF53 0.87 -1.0
43,756 - GFF53 0.87 -0.3
43,756 - GFF53 0.87 +0.7
43,758 + GFF53 0.87 -2.6
43,852 + -2.5
43,852 + -0.3
43,852 + -1.0
43,852 + -0.3
43,852 + -0.1
43,852 + -1.6
43,852 + +1.6
43,860 - -0.4
43,860 - -0.3
43,860 - +0.0
43,860 - +0.5
43,860 - -2.4
43,872 + -1.1
43,874 - +0.3
43,882 + -1.5
44,421 + -0.6
44,421 + -1.7
44,421 + -0.6
44,421 + +0.8
44,429 - -0.2
44,429 - -1.3
44,429 - +0.8
44,429 - +1.0
44,429 - +0.0
44,429 - +0.9
44,429 - -0.0
44,518 - -1.5
44,521 - -0.3
44,537 - -0.2
44,654 - GFF55 0.22 -1.4
44,687 - GFF55 0.27 -1.0
44,688 - GFF55 0.27 -0.6
44,739 - GFF55 0.35 +0.3
44,778 - GFF55 0.42 +0.1

Or see this region's nucleotide sequence