Strain Fitness in Sphingobium sp. HT1-2 around GFF5290

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,279,072	+		GFF5288	0.46	-0.9
5,279,077	+		GFF5288	0.47	-0.3
5,279,080	-		GFF5288	0.48	-0.6
5,279,080	-		GFF5288	0.48	-0.7
5,279,085	-		GFF5288	0.50	-0.0
5,279,085	-		GFF5288	0.50	-0.9
5,279,089	+		GFF5288	0.51	-1.2
5,279,090	-		GFF5288	0.51	-0.9
5,279,090	-		GFF5288	0.51	-0.6
5,279,142	-		GFF5288	0.67	-0.8
5,279,161	-		GFF5288	0.72	-2.4
5,279,169	-		GFF5288	0.75	-0.4
5,279,176	+		GFF5288	0.77	-1.9
5,279,177	-		GFF5288	0.77	-0.7
5,279,215	+		GFF5288	0.88	+0.0
5,279,215	+		GFF5288	0.88	-2.4
5,279,215	+		GFF5288	0.88	-2.5
5,279,215	+		GFF5288	0.88	-0.3
5,279,215	+		GFF5288	0.88	-0.3
5,279,215	+		GFF5288	0.88	-1.4
5,279,215	+		GFF5288	0.88	+0.3
5,279,215	+		GFF5288	0.88	-0.1
5,279,215	+		GFF5288	0.88	-1.6
5,279,215	+		GFF5288	0.88	-1.6
5,279,215	+		GFF5288	0.88	-0.5
5,279,215	+		GFF5288	0.88	+0.0
5,279,215	+		GFF5288	0.88	-0.4
5,279,215	+		GFF5288	0.88	+1.2
5,279,215	+		GFF5288	0.88	+1.0
5,279,215	+		GFF5288	0.88	-0.3
5,279,223	-				+0.7
5,279,223	-				-1.9
5,279,223	-				-0.4
5,279,223	-				-0.8
5,279,223	-				-1.6
5,279,223	-				-0.3
5,279,223	-				-0.1
5,279,223	-				-0.1
5,279,223	-				-1.8
5,279,223	-				+0.4
5,279,223	-				+0.7
5,279,223	-				-0.6
5,279,223	-				-1.3
5,279,223	-				+0.1
5,279,223	-				-1.1
5,279,223	-				-1.1
5,279,260	+				-1.3
5,279,277	+				-1.2
5,279,277	+				-1.0
5,279,277	+				-0.6
5,279,277	+				-1.9
5,279,285	-				+0.5
5,279,285	-				+0.3
5,279,289	+				-0.7
5,279,297	-				+0.3
5,279,297	-				-1.2
5,279,302	-				-2.9
5,279,327	+				-0.5
5,279,327	+				+0.3
5,279,327	+				+0.5
5,279,327	+				-1.2
5,279,340	-				+0.1
5,279,359	-				-0.1
5,279,362	+				-0.5
5,279,362	+				-2.3
5,279,370	-				+0.1
5,279,370	-				+0.8
5,279,371	+				-0.8
5,279,371	+				-0.1
5,279,374	+				+1.6
5,279,379	+				-0.0
5,279,379	+				-0.7
5,279,382	-				+0.2
5,279,403	-				-0.8
5,279,430	-				+0.2
5,279,433	+				+0.1
5,279,433	+				-1.1
5,279,433	+				-0.0
5,279,436	-				+0.6
5,279,438	+				-1.7
5,279,441	-				-1.4
5,279,441	-				-0.8
5,279,441	-				-2.6
5,279,441	-				-0.8
5,279,441	-				-0.9
5,279,441	-				-1.8
5,279,441	-				+1.0
5,279,446	-				+0.5
5,279,460	+				+0.2
5,279,460	+				-3.3
5,279,460	+				+0.6
5,279,463	-				+1.0
5,279,468	-				-1.0
5,279,468	-				+0.0
5,279,468	-				-1.1
5,279,468	-				-0.2
5,279,485	+				-0.4
5,279,486	-				+0.2
5,279,499	+				+0.5
5,279,502	+				-0.2
5,279,508	+				-0.2
5,279,512	-				-0.9
5,279,527	+				-0.3
5,279,535	-				+0.8
5,279,535	-				+0.4
5,279,535	-				-1.9
5,279,535	-				-0.7
5,279,537	+				-0.4
5,279,545	-				-0.2
5,279,548	+				+1.2
5,279,555	+				+0.4
5,279,563	+				-1.8
5,279,564	-				-0.8
5,279,573	+				-0.6
5,279,578	+				+0.4
5,279,581	-				-1.3
5,279,581	-				-1.9
5,279,581	-				-0.6
5,279,616	+		GFF5289	0.17	-0.3
5,279,616	+		GFF5289	0.17	+0.9
5,279,616	+		GFF5289	0.17	-1.6
5,279,616	+		GFF5289	0.17	-1.7
5,279,616	+		GFF5289	0.17	+0.3
5,279,617	-		GFF5289	0.18	-2.9
5,279,624	-		GFF5289	0.20	+0.5
5,279,624	-		GFF5289	0.20	-0.2
5,279,624	-		GFF5289	0.20	+0.9
5,279,624	-		GFF5289	0.20	-1.1
5,279,684	+		GFF5289	0.39	+0.1
5,279,692	-		GFF5289	0.42	-0.2
5,279,702	-		GFF5289	0.45	+0.5
5,279,726	+		GFF5289	0.53	+0.7
5,279,728	+		GFF5289	0.54	-0.8
5,279,734	+		GFF5289	0.56	-0.3
5,279,734	-		GFF5289	0.56	-0.5
5,279,751	-		GFF5289	0.61	-0.6
5,279,802	-		GFF5289	0.78	-0.4
5,279,817	-		GFF5289	0.83	-0.4
5,279,832	+		GFF5289	0.87	-0.1
5,279,840	-				+0.3
5,279,840	-				-1.0
5,279,864	-				-0.4
5,279,871	-				-0.1
5,279,879	+				-0.1
5,279,891	+				-0.6
5,279,917	+				-1.6
5,279,927	+				-1.5
5,279,927	+				+0.3
5,279,953	+				-1.0
5,279,953	+				+0.2
5,279,953	+				-1.7
5,279,953	+				+0.4
5,279,956	-				+0.6
5,279,956	-				-1.3
5,279,961	-				+0.3
5,279,964	+				-1.0
5,279,971	+				+0.2
5,280,013	-				-0.9
5,280,034	-				-0.6
5,280,041	+				-0.9
5,280,054	+				-2.1
5,280,055	+				-0.1
5,280,062	+				-2.5
5,280,062	-				+0.1
5,280,070	-				-0.7
5,280,072	-				-1.7
5,280,089	-		GFF5290	0.15	+0.5
5,280,124	-		GFF5290	0.38	-2.2
5,280,139	+		GFF5290	0.48	-0.4
5,280,149	+		GFF5290	0.55	-1.1
5,280,155	+		GFF5290	0.59	+1.0
5,280,155	+		GFF5290	0.59	-0.3
5,280,155	+		GFF5290	0.59	+0.0
5,280,158	-		GFF5290	0.61	-1.1
5,280,165	+		GFF5290	0.65	+0.3
5,280,173	-		GFF5290	0.71	-2.4
5,280,173	-		GFF5290	0.71	-2.8
5,280,174	+		GFF5290	0.71	+0.1
5,280,174	+		GFF5290	0.71	-0.6
5,280,176	-		GFF5290	0.73	-0.1
5,280,184	+		GFF5290	0.78	+0.5
5,280,184	+		GFF5290	0.78	+0.0
5,280,184	+		GFF5290	0.78	-2.2
5,280,184	+		GFF5290	0.78	+0.3
5,280,189	+		GFF5290	0.81	-1.9
5,280,192	+		GFF5290	0.83	+0.0
5,280,199	-		GFF5290	0.88	+0.5
5,280,205	+				-0.8
5,280,213	-				+0.0
5,280,219	+				+0.2
5,280,274	-				-0.1
5,280,276	+				-1.2
5,280,301	+				-0.9
5,280,302	+				-0.1
5,280,309	-				+0.5
5,280,320	-				-0.7
5,280,338	-				-1.1
5,280,340	-				+0.1
5,280,368	+				+0.0
5,280,368	+				+0.7
5,280,368	+				+0.1
5,280,368	+				+1.2
5,280,368	+				-2.4
5,280,370	+				+0.0
5,280,370	+				-0.0
5,280,370	+				-1.7
5,280,370	+				-0.7
5,280,370	+				+0.4
5,280,370	+				+0.3
5,280,370	+				-0.3
5,280,370	+				+0.0
5,280,370	+				-2.5
5,280,370	+				-2.3
5,280,376	-				+0.1
5,280,376	-				-0.3
5,280,376	-				+0.2
5,280,376	-				-0.4
5,280,376	-				+0.9
5,280,378	-				-1.1
5,280,378	-				-0.9
5,280,390	+				-2.3
5,280,409	+		GFF5291	0.11	-1.2
5,280,410	+		GFF5291	0.11	+1.3
5,280,412	-		GFF5291	0.12	-0.8
5,280,412	-		GFF5291	0.12	-0.9
5,280,420	+		GFF5291	0.13	+0.7
5,280,425	+		GFF5291	0.13	-0.4
5,280,425	+		GFF5291	0.13	-0.3
5,280,425	+		GFF5291	0.13	-1.4
5,280,460	-		GFF5291	0.18	+0.4
5,280,465	-		GFF5291	0.18	-1.0
5,280,470	-		GFF5291	0.19	-1.9
5,280,477	-		GFF5291	0.20	-1.3
5,280,479	+		GFF5291	0.20	-0.1
5,280,487	-		GFF5291	0.21	-0.4
5,280,490	+		GFF5291	0.22	-0.3
5,280,490	+		GFF5291	0.22	+0.1
5,280,492	-		GFF5291	0.22	+0.9
5,280,514	+		GFF5291	0.25	-0.4
5,280,514	+		GFF5291	0.25	-0.2
5,280,514	+		GFF5291	0.25	+1.2
5,280,522	-		GFF5291	0.26	-0.8
5,280,522	-		GFF5291	0.26	-0.3
5,280,522	-		GFF5291	0.26	+0.2
5,280,522	-		GFF5291	0.26	-0.3
5,280,522	-		GFF5291	0.26	-0.7
5,280,531	-		GFF5291	0.27	-0.5
5,280,553	+		GFF5291	0.30	+0.4
5,280,553	+		GFF5291	0.30	-2.5
5,280,553	+		GFF5291	0.30	-1.0
5,280,553	+		GFF5291	0.30	-0.1
5,280,553	+		GFF5291	0.30	-0.8
5,280,561	-		GFF5291	0.31	+0.0
5,280,561	-		GFF5291	0.31	-0.1
5,280,580	+		GFF5291	0.33	+0.6
5,280,602	-		GFF5291	0.36	+0.1
5,280,607	-		GFF5291	0.37	-2.4
5,280,617	+		GFF5291	0.38	-2.4
5,280,617	+		GFF5291	0.38	+0.4
5,280,625	-		GFF5291	0.39	-0.5
5,280,629	+		GFF5291	0.39	+0.7
5,280,629	+		GFF5291	0.39	-2.4
5,280,630	+		GFF5291	0.39	-0.1
5,280,639	+		GFF5291	0.41	+0.3
5,280,647	-		GFF5291	0.42	+0.3
5,280,647	-		GFF5291	0.42	+0.0
5,280,649	+		GFF5291	0.42	+0.7
5,280,649	+		GFF5291	0.42	-0.3
5,280,657	+		GFF5291	0.43	+0.3
5,280,671	+		GFF5291	0.45	-1.7
5,280,679	-		GFF5291	0.46	-0.6
5,280,775	+		GFF5291	0.58	-1.4
5,280,783	+		GFF5291	0.59	-1.0
5,280,785	-		GFF5291	0.59	-0.8
5,280,785	-		GFF5291	0.59	+0.7
5,280,793	-		GFF5291	0.60	-2.8
5,280,807	-		GFF5291	0.62	-0.0
5,280,873	-		GFF5291	0.70	-1.6
5,280,887	+		GFF5291	0.72	-0.1
5,280,913	+		GFF5291	0.75	-0.6
5,280,921	-		GFF5291	0.76	-2.3
5,280,921	-		GFF5291	0.76	-1.1
5,280,930	+		GFF5291	0.78	-0.7
5,280,930	+		GFF5291	0.78	+0.5
5,280,938	-		GFF5291	0.79	-2.3
5,280,938	-		GFF5291	0.79	+1.2
5,280,938	-		GFF5291	0.79	-0.8
5,280,938	-		GFF5291	0.79	-2.6
5,280,938	-		GFF5291	0.79	-0.7
5,280,938	-		GFF5291	0.79	-0.5
5,280,948	+		GFF5291	0.80	-0.3
5,280,948	+		GFF5291	0.80	-0.6
5,280,956	+		GFF5291	0.81	+0.3
5,280,956	+		GFF5291	0.81	-0.2
5,280,992	+		GFF5291	0.85	-0.6
5,280,999	+		GFF5291	0.86	-1.7
5,280,999	+		GFF5291	0.86	-0.5
5,280,999	+		GFF5291	0.86	+0.0
5,281,001	-		GFF5291	0.87	+0.1
5,281,007	-		GFF5291	0.87	-0.8
5,281,010	+		GFF5291	0.88	-1.2
5,281,017	-		GFF5291	0.89	-1.0
5,281,017	-		GFF5291	0.89	+1.7
5,281,030	+				-0.6
5,281,038	-				-0.0
5,281,043	+				-2.4
5,281,043	+				-0.2
5,281,043	+				+0.9
5,281,043	+				+1.1
5,281,043	+				+0.9
5,281,043	+				-1.0
5,281,043	+				-2.0
5,281,043	+				-0.9
5,281,043	+				-0.7
5,281,051	-				-0.0
5,281,051	-				-0.6
5,281,051	-				-1.9
5,281,061	-				+0.8
5,281,062	+				-0.5
5,281,062	+				+0.4
5,281,062	+				-1.0
5,281,062	+				-0.0
5,281,062	+				+0.1
5,281,062	+				+0.4
5,281,065	-				+0.7
5,281,070	-				-1.4
5,281,070	-				-0.5
5,281,075	-				-1.0
5,281,075	-				+0.8
5,281,075	-				-0.8
5,281,080	-				-1.7
5,281,111	+				-0.0
5,281,118	+				-0.0
5,281,118	+				-1.6
5,281,118	+				-2.0
5,281,118	+				+0.4
5,281,118	+				-0.3
5,281,118	+				-2.3
5,281,118	+				-0.6
5,281,118	+				-0.1
5,281,118	+				-0.7
5,281,118	+				-0.1
5,281,118	+				-1.3
5,281,118	+				-2.0
5,281,118	+				-1.2
5,281,118	+				-1.6
5,281,118	+				-1.9
5,281,118	+				-0.1
5,281,118	+				+0.3
5,281,118	+				-0.7
5,281,118	+				-1.0
5,281,118	+				+1.3
5,281,118	+				-0.1
5,281,118	+				-0.4
5,281,118	+				+0.2
5,281,118	+				-1.3
5,281,118	+				+0.8
5,281,119	-				-0.6
5,281,119	-				-0.7
5,281,126	-				-0.6
5,281,126	-				+0.3
5,281,126	-				-1.8
5,281,126	-				-0.8
5,281,126	-				+0.3
5,281,126	-				-1.1
5,281,126	-				+0.3
5,281,126	-				-0.1
5,281,126	-				-0.3
5,281,126	-				-0.1
5,281,126	-				+0.3
5,281,126	-				-1.4
5,281,126	-				-1.5
5,281,126	-				-0.0
5,281,126	-				-0.0
5,281,128	-				+1.0
5,281,131	-				-1.1
5,281,131	-				-0.5
5,281,150	-				+0.6
5,281,150	-				-1.2
5,281,170	+		GFF5292	0.12	-1.2
5,281,170	+		GFF5292	0.12	-0.6
5,281,170	-		GFF5292	0.12	-0.9
5,281,178	-		GFF5292	0.14	+0.3
5,281,198	+		GFF5292	0.17	+0.4