Strain Fitness in Sphingobium sp. HT1-2 around GFF5251

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5250 and GFF5251 are separated by 561 nucleotidesGFF5251 and GFF5252 overlap by 22 nucleotidesGFF5252 and GFF5253 are separated by 65 nucleotidesGFF5253 and GFF5254 overlap by 8 nucleotides GFF5250 - Replication protein, at 5,244,748 to 5,245,407 GFF5250 GFF5251 - Death on curing protein, Doc toxin, at 5,245,969 to 5,246,274 GFF5251 GFF5252 - Prevent host death protein, Phd antitoxin, at 5,246,253 to 5,246,525 GFF5252 GFF5253 - hypothetical protein, at 5,246,591 to 5,247,034 GFF5253 GFF5254 - Mobilization protein, at 5,247,027 to 5,247,302 GFF5254 Position (kb) 5245 5246 5247Strain fitness (log2 ratio) -3 -2 -1 0 1at 5244.989 kb on + strand, within GFF5250at 5245.127 kb on + strand, within GFF5250at 5245.300 kb on - strand, within GFF5250at 5245.353 kb on - strandat 5245.446 kb on - strandat 5245.743 kb on + strandat 5245.967 kb on + strandat 5246.002 kb on + strand, within GFF5251at 5246.002 kb on + strand, within GFF5251at 5246.002 kb on + strand, within GFF5251at 5246.008 kb on + strand, within GFF5251at 5246.046 kb on + strand, within GFF5251at 5246.064 kb on + strand, within GFF5251at 5246.064 kb on + strand, within GFF5251at 5246.072 kb on + strand, within GFF5251at 5246.073 kb on + strand, within GFF5251at 5246.094 kb on + strand, within GFF5251at 5246.100 kb on - strand, within GFF5251at 5246.131 kb on + strand, within GFF5251at 5246.141 kb on + strand, within GFF5251at 5246.156 kb on + strand, within GFF5251at 5246.156 kb on + strand, within GFF5251at 5246.156 kb on + strand, within GFF5251at 5246.225 kb on + strand, within GFF5251at 5246.236 kb on + strand, within GFF5251at 5246.282 kb on + strand, within GFF5252at 5246.282 kb on + strand, within GFF5252at 5246.282 kb on + strand, within GFF5252at 5246.282 kb on + strand, within GFF5252at 5246.380 kb on + strand, within GFF5252at 5246.413 kb on + strand, within GFF5252at 5246.419 kb on + strand, within GFF5252at 5246.545 kb on + strandat 5246.589 kb on + strandat 5246.589 kb on + strandat 5246.589 kb on + strandat 5246.589 kb on + strandat 5246.589 kb on + strandat 5246.589 kb on + strandat 5246.589 kb on + strandat 5246.599 kb on + strandat 5246.602 kb on + strandat 5246.607 kb on - strandat 5246.633 kb on + strandat 5246.634 kb on + strandat 5246.634 kb on + strandat 5246.642 kb on - strand, within GFF5253at 5246.674 kb on + strand, within GFF5253at 5246.684 kb on + strand, within GFF5253at 5246.685 kb on + strand, within GFF5253at 5246.695 kb on + strand, within GFF5253at 5246.711 kb on + strand, within GFF5253at 5246.711 kb on + strand, within GFF5253at 5246.719 kb on - strand, within GFF5253at 5246.724 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.734 kb on + strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.740 kb on + strand, within GFF5253at 5246.812 kb on + strand, within GFF5253at 5246.820 kb on + strand, within GFF5253at 5246.820 kb on + strand, within GFF5253at 5246.828 kb on - strand, within GFF5253at 5246.828 kb on - strand, within GFF5253at 5246.832 kb on + strand, within GFF5253at 5246.854 kb on + strand, within GFF5253at 5246.880 kb on - strand, within GFF5253at 5246.903 kb on - strand, within GFF5253at 5246.905 kb on + strand, within GFF5253at 5246.907 kb on + strand, within GFF5253at 5246.928 kb on + strand, within GFF5253at 5246.952 kb on + strand, within GFF5253at 5246.952 kb on + strand, within GFF5253at 5246.952 kb on + strand, within GFF5253at 5246.960 kb on - strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.988 kb on + strand, within GFF5253at 5246.988 kb on + strand, within GFF5253at 5247.010 kb on + strandat 5247.023 kb on - strandat 5247.023 kb on - strandat 5247.025 kb on - strandat 5247.028 kb on - strandat 5247.038 kb on - strandat 5247.046 kb on + strandat 5247.046 kb on + strandat 5247.054 kb on + strandat 5247.055 kb on + strand, within GFF5254at 5247.055 kb on + strand, within GFF5254at 5247.062 kb on - strand, within GFF5254at 5247.062 kb on - strand, within GFF5254at 5247.063 kb on + strand, within GFF5254at 5247.070 kb on + strand, within GFF5254at 5247.070 kb on + strand, within GFF5254at 5247.077 kb on + strand, within GFF5254at 5247.081 kb on - strand, within GFF5254at 5247.086 kb on - strand, within GFF5254at 5247.091 kb on - strand, within GFF5254at 5247.115 kb on - strand, within GFF5254at 5247.135 kb on + strand, within GFF5254at 5247.139 kb on + strand, within GFF5254at 5247.141 kb on - strand, within GFF5254at 5247.170 kb on + strand, within GFF5254at 5247.170 kb on + strand, within GFF5254at 5247.193 kb on + strand, within GFF5254at 5247.195 kb on - strand, within GFF5254at 5247.200 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.206 kb on + strand, within GFF5254at 5247.237 kb on - strand, within GFF5254at 5247.249 kb on + strand, within GFF5254at 5247.257 kb on - strand, within GFF5254at 5247.257 kb on - strand, within GFF5254at 5247.257 kb on - strand, within GFF5254

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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5,244,989 + GFF5250 0.37 -1.6
5,245,127 + GFF5250 0.57 -2.0
5,245,300 - GFF5250 0.84 +0.6
5,245,353 - +0.2
5,245,446 - -1.9
5,245,743 + -0.6
5,245,967 + -3.3
5,246,002 + GFF5251 0.11 +1.7
5,246,002 + GFF5251 0.11 -0.9
5,246,002 + GFF5251 0.11 -1.3
5,246,008 + GFF5251 0.13 -1.8
5,246,046 + GFF5251 0.25 -1.4
5,246,064 + GFF5251 0.31 -1.0
5,246,064 + GFF5251 0.31 -0.1
5,246,072 + GFF5251 0.34 -0.7
5,246,073 + GFF5251 0.34 -1.6
5,246,094 + GFF5251 0.41 -2.8
5,246,100 - GFF5251 0.43 -2.1
5,246,131 + GFF5251 0.53 +0.2
5,246,141 + GFF5251 0.56 -2.9
5,246,156 + GFF5251 0.61 -2.1
5,246,156 + GFF5251 0.61 -1.6
5,246,156 + GFF5251 0.61 -1.1
5,246,225 + GFF5251 0.84 -3.2
5,246,236 + GFF5251 0.87 -1.0
5,246,282 + GFF5252 0.11 -1.6
5,246,282 + GFF5252 0.11 -0.6
5,246,282 + GFF5252 0.11 -2.4
5,246,282 + GFF5252 0.11 -2.5
5,246,380 + GFF5252 0.47 -0.3
5,246,413 + GFF5252 0.59 -1.6
5,246,419 + GFF5252 0.61 -0.9
5,246,545 + -0.6
5,246,589 + -1.9
5,246,589 + -2.1
5,246,589 + -2.4
5,246,589 + -0.4
5,246,589 + +0.7
5,246,589 + -0.4
5,246,589 + -0.4
5,246,599 + -2.5
5,246,602 + -1.2
5,246,607 - -1.3
5,246,633 + -2.9
5,246,634 + -2.0
5,246,634 + -0.1
5,246,642 - GFF5253 0.11 -1.6
5,246,674 + GFF5253 0.19 -1.0
5,246,684 + GFF5253 0.21 -2.0
5,246,685 + GFF5253 0.21 -1.8
5,246,695 + GFF5253 0.23 -1.7
5,246,711 + GFF5253 0.27 -1.6
5,246,711 + GFF5253 0.27 -0.5
5,246,719 - GFF5253 0.29 -1.0
5,246,724 + GFF5253 0.30 +1.0
5,246,729 + GFF5253 0.31 +1.4
5,246,729 + GFF5253 0.31 -1.1
5,246,729 + GFF5253 0.31 -2.2
5,246,729 + GFF5253 0.31 -1.3
5,246,729 + GFF5253 0.31 -0.4
5,246,729 + GFF5253 0.31 -1.2
5,246,729 + GFF5253 0.31 -1.2
5,246,729 + GFF5253 0.31 -1.6
5,246,729 + GFF5253 0.31 +0.0
5,246,729 + GFF5253 0.31 -2.3
5,246,729 + GFF5253 0.31 -1.2
5,246,729 + GFF5253 0.31 -1.9
5,246,729 + GFF5253 0.31 -1.8
5,246,729 + GFF5253 0.31 +0.7
5,246,729 + GFF5253 0.31 +0.3
5,246,729 + GFF5253 0.31 -0.8
5,246,734 + GFF5253 0.32 -1.9
5,246,737 - GFF5253 0.33 -2.5
5,246,737 - GFF5253 0.33 -1.6
5,246,737 - GFF5253 0.33 -1.9
5,246,737 - GFF5253 0.33 +0.1
5,246,737 - GFF5253 0.33 -1.3
5,246,737 - GFF5253 0.33 -2.3
5,246,740 + GFF5253 0.34 -3.4
5,246,812 + GFF5253 0.50 -0.6
5,246,820 + GFF5253 0.52 -0.9
5,246,820 + GFF5253 0.52 -1.6
5,246,828 - GFF5253 0.53 -2.6
5,246,828 - GFF5253 0.53 -2.3
5,246,832 + GFF5253 0.54 -0.4
5,246,854 + GFF5253 0.59 -2.2
5,246,880 - GFF5253 0.65 -1.9
5,246,903 - GFF5253 0.70 -0.5
5,246,905 + GFF5253 0.71 -1.6
5,246,907 + GFF5253 0.71 -3.1
5,246,928 + GFF5253 0.76 -0.8
5,246,952 + GFF5253 0.81 -0.7
5,246,952 + GFF5253 0.81 -1.0
5,246,952 + GFF5253 0.81 -0.5
5,246,960 - GFF5253 0.83 -1.0
5,246,962 + GFF5253 0.84 -0.6
5,246,962 + GFF5253 0.84 -0.1
5,246,962 + GFF5253 0.84 -2.3
5,246,962 + GFF5253 0.84 -0.8
5,246,962 + GFF5253 0.84 -1.9
5,246,962 + GFF5253 0.84 -2.9
5,246,962 + GFF5253 0.84 -2.0
5,246,962 + GFF5253 0.84 -0.1
5,246,962 + GFF5253 0.84 -0.5
5,246,962 + GFF5253 0.84 -2.8
5,246,962 + GFF5253 0.84 -1.6
5,246,962 + GFF5253 0.84 -1.6
5,246,962 + GFF5253 0.84 -1.3
5,246,962 + GFF5253 0.84 -0.6
5,246,962 + GFF5253 0.84 -2.0
5,246,962 + GFF5253 0.84 -1.9
5,246,962 + GFF5253 0.84 -0.6
5,246,962 + GFF5253 0.84 -2.5
5,246,962 + GFF5253 0.84 -2.3
5,246,970 - GFF5253 0.85 -1.4
5,246,970 - GFF5253 0.85 -0.6
5,246,970 - GFF5253 0.85 -2.6
5,246,970 - GFF5253 0.85 -0.8
5,246,970 - GFF5253 0.85 +0.1
5,246,970 - GFF5253 0.85 -1.8
5,246,970 - GFF5253 0.85 -1.6
5,246,970 - GFF5253 0.85 -1.5
5,246,988 + GFF5253 0.89 -1.4
5,246,988 + GFF5253 0.89 -2.3
5,247,010 + -1.6
5,247,023 - -0.8
5,247,023 - +0.4
5,247,025 - +0.1
5,247,028 - -1.2
5,247,038 - -1.3
5,247,046 + -0.4
5,247,046 + -1.4
5,247,054 + -1.8
5,247,055 + GFF5254 0.10 -0.3
5,247,055 + GFF5254 0.10 -1.6
5,247,062 - GFF5254 0.13 -1.3
5,247,062 - GFF5254 0.13 -2.7
5,247,063 + GFF5254 0.13 -1.6
5,247,070 + GFF5254 0.16 -2.6
5,247,070 + GFF5254 0.16 -0.0
5,247,077 + GFF5254 0.18 -0.6
5,247,081 - GFF5254 0.20 -3.6
5,247,086 - GFF5254 0.21 -1.9
5,247,091 - GFF5254 0.23 -2.1
5,247,115 - GFF5254 0.32 -0.8
5,247,135 + GFF5254 0.39 -1.4
5,247,139 + GFF5254 0.41 +0.1
5,247,141 - GFF5254 0.41 -2.0
5,247,170 + GFF5254 0.52 -0.4
5,247,170 + GFF5254 0.52 -1.9
5,247,193 + GFF5254 0.60 -1.8
5,247,195 - GFF5254 0.61 -0.8
5,247,200 + GFF5254 0.63 -1.6
5,247,201 + GFF5254 0.63 -2.6
5,247,201 + GFF5254 0.63 -2.3
5,247,201 + GFF5254 0.63 -1.6
5,247,201 + GFF5254 0.63 -1.0
5,247,201 + GFF5254 0.63 -2.8
5,247,201 + GFF5254 0.63 -1.6
5,247,201 + GFF5254 0.63 -2.2
5,247,206 + GFF5254 0.65 -2.2
5,247,237 - GFF5254 0.76 -0.0
5,247,249 + GFF5254 0.80 -0.6
5,247,257 - GFF5254 0.83 -2.6
5,247,257 - GFF5254 0.83 -1.9
5,247,257 - GFF5254 0.83 -1.6

Or see this region's nucleotide sequence