Strain Fitness in Sphingobium sp. HT1-2 around GFF5247

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,241,522	+		GFF5245	0.61	+0.8
5,241,522	+		GFF5245	0.61	+0.2
5,241,522	+		GFF5245	0.61	+1.4
5,241,522	+		GFF5245	0.61	+1.7
5,241,522	+		GFF5245	0.61	+0.7
5,241,522	+		GFF5245	0.61	-1.9
5,241,522	+		GFF5245	0.61	-0.9
5,241,522	+		GFF5245	0.61	-0.3
5,241,522	+		GFF5245	0.61	+0.3
5,241,530	-		GFF5245	0.62	+0.0
5,241,530	-		GFF5245	0.62	+1.8
5,241,530	-		GFF5245	0.62	-0.3
5,241,530	-		GFF5245	0.62	-0.2
5,241,530	-		GFF5245	0.62	+0.8
5,241,530	-		GFF5245	0.62	-0.4
5,241,530	-		GFF5245	0.62	-0.6
5,241,530	-		GFF5245	0.62	+0.0
5,241,530	-		GFF5245	0.62	-0.2
5,241,530	-		GFF5245	0.62	+0.6
5,241,535	+		GFF5245	0.62	+0.2
5,241,535	+		GFF5245	0.62	+0.1
5,241,543	-		GFF5245	0.63	-0.8
5,241,552	+		GFF5245	0.64	+1.2
5,241,560	-		GFF5245	0.65	-0.7
5,241,560	-		GFF5245	0.65	+0.6
5,241,561	+		GFF5245	0.65	-1.6
5,241,562	+		GFF5245	0.65	-0.6
5,241,562	+		GFF5245	0.65	-1.8
5,241,570	+		GFF5245	0.66	+0.6
5,241,571	+		GFF5245	0.66	-0.4
5,241,578	-		GFF5245	0.66	+1.5
5,241,584	+		GFF5245	0.67	+0.4
5,241,603	+		GFF5245	0.68	-0.9
5,241,603	+		GFF5245	0.68	-1.1
5,241,611	-		GFF5245	0.69	+0.6
5,241,611	-		GFF5245	0.69	-0.4
5,241,611	-		GFF5245	0.69	+0.8
5,241,655	+		GFF5245	0.73	+0.1
5,241,655	+		GFF5245	0.73	-0.4
5,241,658	-		GFF5245	0.73	-0.6
5,241,668	-		GFF5245	0.74	+1.1
5,241,669	+		GFF5245	0.74	-0.6
5,241,695	-		GFF5245	0.76	-0.9
5,241,695	-		GFF5245	0.76	+1.1
5,241,695	-		GFF5245	0.76	+0.6
5,241,708	+		GFF5245	0.78	+0.7
5,241,708	+		GFF5245	0.78	+0.1
5,241,708	+		GFF5245	0.78	-0.3
5,241,708	+		GFF5245	0.78	+0.8
5,241,708	+		GFF5245	0.78	+1.1
5,241,708	+		GFF5245	0.78	+0.6
5,241,708	+		GFF5245	0.78	+1.4
5,241,716	-		GFF5245	0.78	+0.7
5,241,716	-		GFF5245	0.78	-1.6
5,241,716	-		GFF5245	0.78	-1.8
5,241,758	+		GFF5245	0.82	-0.5
5,241,773	+		GFF5245	0.83	-0.1
5,241,778	+		GFF5245	0.84	-0.1
5,241,778	+		GFF5245	0.84	+0.2
5,241,778	+		GFF5245	0.84	-0.4
5,241,798	+		GFF5245	0.85	+1.7
5,241,881	+				+1.1
5,241,889	-				-0.7
5,241,889	-				+0.9
5,241,933	-				-0.8
5,241,933	-				+0.2
5,242,195	-		GFF5246	0.66	-1.0
5,242,266	-				-0.4
5,242,266	-				-1.0
5,242,266	-				+0.3
5,242,266	-				-1.8
5,242,266	-				-0.7
5,242,266	-				-1.2
5,242,266	-				-1.7
5,242,266	-				-2.7
5,242,266	-				-0.7
5,242,266	-				+0.3
5,242,266	-				-0.5
5,242,266	-				-1.9
5,242,266	-				-0.6
5,242,266	-				-1.6
5,242,266	-				-0.5
5,242,266	-				-1.3
5,242,266	-				-0.9
5,242,266	-				-1.3
5,242,266	-				-1.0
5,242,266	-				-2.7
5,242,393	+				-0.6
5,242,402	+				-0.0
5,242,422	+				-0.4
5,242,424	+				-1.9
5,242,425	+				-2.0
5,242,425	+				-0.8
5,242,425	+				-0.2
5,242,451	+				-1.9
5,242,451	+				-0.7
5,242,451	+				-1.1
5,242,459	-				+0.0
5,242,460	-				-0.6
5,242,466	-				-2.0
5,242,471	-				-1.9
5,242,476	-				-0.1
5,242,490	+				-0.2
5,242,490	+				-0.9
5,242,492	+				-0.5
5,242,497	+				-1.7
5,242,498	-				-2.0
5,242,504	+				-1.8
5,242,505	-				-1.7
5,242,520	-				-0.8
5,242,524	-				-2.5
5,242,524	-				-1.9
5,242,527	-				-2.4
5,242,534	-				+0.2
5,242,544	-				-1.9
5,242,613	+				-2.8
5,242,613	+				-3.0
5,242,613	+				-1.9
5,242,613	+				-0.3
5,242,621	-				-2.2
5,242,622	-				-1.0
5,242,623	+				-2.3
5,242,623	+				-1.9
5,242,628	+				-1.5
5,242,629	+				-0.7
5,242,629	+				-0.8
5,242,631	-				-2.6
5,242,632	-				-1.4
5,242,632	-				-2.8
5,242,632	-				-2.4
5,242,634	+				-0.5
5,242,642	-				-1.6
5,242,652	-				-1.6
5,242,655	+		GFF5247	0.10	-2.8
5,242,655	+		GFF5247	0.10	-2.2
5,242,667	+		GFF5247	0.11	-1.4
5,242,673	+		GFF5247	0.11	-0.7
5,242,673	+		GFF5247	0.11	-1.6
5,242,674	-		GFF5247	0.11	-1.6
5,242,675	-		GFF5247	0.11	-1.3
5,242,681	-		GFF5247	0.12	-2.1
5,242,691	+		GFF5247	0.12	-1.6
5,242,692	-		GFF5247	0.13	-0.8
5,242,696	+		GFF5247	0.13	-1.4
5,242,696	+		GFF5247	0.13	-1.3
5,242,724	-		GFF5247	0.15	-2.3
5,242,724	-		GFF5247	0.15	-0.6
5,242,734	+		GFF5247	0.15	-2.3
5,242,739	+		GFF5247	0.16	+0.0
5,242,754	+		GFF5247	0.17	-0.8
5,242,762	-		GFF5247	0.17	-1.6
5,242,762	-		GFF5247	0.17	-1.6
5,242,772	+		GFF5247	0.18	-1.8
5,242,780	-		GFF5247	0.19	-2.1
5,242,791	+		GFF5247	0.19	-1.9
5,242,791	+		GFF5247	0.19	-2.0
5,242,791	+		GFF5247	0.19	+0.4
5,242,794	-		GFF5247	0.20	-1.1
5,242,799	-		GFF5247	0.20	-2.0
5,242,799	-		GFF5247	0.20	-2.1
5,242,799	-		GFF5247	0.20	-2.0
5,242,867	+		GFF5247	0.25	-2.2
5,242,872	+		GFF5247	0.25	-0.4
5,242,875	-		GFF5247	0.25	-2.4
5,242,880	+		GFF5247	0.25	-1.2
5,242,888	-		GFF5247	0.26	-0.0
5,242,888	-		GFF5247	0.26	-1.4
5,242,896	+		GFF5247	0.27	-1.6
5,242,903	+		GFF5247	0.27	-1.4
5,242,903	+		GFF5247	0.27	-0.9
5,242,904	-		GFF5247	0.27	+0.1
5,242,911	-		GFF5247	0.28	-2.2
5,242,911	-		GFF5247	0.28	-0.0
5,242,913	+		GFF5247	0.28	+0.1
5,242,913	+		GFF5247	0.28	-2.9
5,242,918	-		GFF5247	0.28	-2.6
5,242,921	-		GFF5247	0.28	-1.2
5,242,928	-		GFF5247	0.29	-0.3
5,242,934	+		GFF5247	0.29	-2.1
5,242,942	-		GFF5247	0.30	-0.4
5,242,964	-		GFF5247	0.31	-1.8
5,242,984	+		GFF5247	0.33	-0.8
5,243,003	+		GFF5247	0.34	-3.0
5,243,003	+		GFF5247	0.34	-1.5
5,243,003	+		GFF5247	0.34	-2.4
5,243,003	+		GFF5247	0.34	-2.8
5,243,003	+		GFF5247	0.34	-1.1
5,243,003	+		GFF5247	0.34	-2.3
5,243,003	+		GFF5247	0.34	-1.8
5,243,003	+		GFF5247	0.34	-0.7
5,243,003	+		GFF5247	0.34	-2.6
5,243,003	+		GFF5247	0.34	+0.3
5,243,003	+		GFF5247	0.34	+0.4
5,243,003	+		GFF5247	0.34	-2.4
5,243,003	+		GFF5247	0.34	-0.2
5,243,003	+		GFF5247	0.34	-1.5
5,243,003	+		GFF5247	0.34	-3.2
5,243,009	+		GFF5247	0.34	+0.2
5,243,010	-		GFF5247	0.34	-0.6
5,243,011	-		GFF5247	0.34	-2.0
5,243,011	-		GFF5247	0.34	-2.9
5,243,011	-		GFF5247	0.34	-2.4
5,243,011	-		GFF5247	0.34	-0.4
5,243,011	-		GFF5247	0.34	-1.1
5,243,011	-		GFF5247	0.34	-1.1
5,243,011	-		GFF5247	0.34	-2.8
5,243,011	-		GFF5247	0.34	+0.0
5,243,011	-		GFF5247	0.34	-1.8
5,243,011	-		GFF5247	0.34	-3.3
5,243,011	-		GFF5247	0.34	-0.9
5,243,011	-		GFF5247	0.34	-1.3
5,243,011	-		GFF5247	0.34	-1.9
5,243,011	-		GFF5247	0.34	-1.5
5,243,011	-		GFF5247	0.34	-1.5
5,243,011	-		GFF5247	0.34	-1.3
5,243,011	-		GFF5247	0.34	-2.3
5,243,011	-		GFF5247	0.34	-0.2
5,243,011	-		GFF5247	0.34	+0.1
5,243,011	-		GFF5247	0.34	-2.4
5,243,017	-		GFF5247	0.35	+0.1
5,243,028	+		GFF5247	0.36	-2.0
5,243,048	-		GFF5247	0.37	-3.0
5,243,073	+		GFF5247	0.39	-0.8
5,243,083	+		GFF5247	0.39	-2.1
5,243,083	+		GFF5247	0.39	-1.6
5,243,091	+		GFF5247	0.40	-1.6
5,243,091	-		GFF5247	0.40	-0.1
5,243,091	-		GFF5247	0.40	-1.1
5,243,097	-		GFF5247	0.40	-2.2
5,243,099	-		GFF5247	0.40	-1.7
5,243,110	-		GFF5247	0.41	-1.3
5,243,124	+		GFF5247	0.42	-0.8
5,243,176	-		GFF5247	0.46	-2.4
5,243,184	-		GFF5247	0.46	-3.5
5,243,200	-		GFF5247	0.47	+0.0
5,243,202	+		GFF5247	0.48	-0.4
5,243,208	+		GFF5247	0.48	-1.0
5,243,210	-		GFF5247	0.48	-0.3
5,243,211	-		GFF5247	0.48	-3.3
5,243,218	-		GFF5247	0.49	-1.2
5,243,220	+		GFF5247	0.49	-0.2
5,243,242	+		GFF5247	0.50	-0.4
5,243,260	-		GFF5247	0.52	-0.6
5,243,278	+		GFF5247	0.53	+1.6
5,243,278	+		GFF5247	0.53	-1.5
5,243,278	+		GFF5247	0.53	-1.9
5,243,278	+		GFF5247	0.53	-0.7
5,243,278	+		GFF5247	0.53	-1.0
5,243,281	-		GFF5247	0.53	-2.5
5,243,283	+		GFF5247	0.53	-1.8
5,243,286	-		GFF5247	0.53	-1.9
5,243,288	+		GFF5247	0.53	-2.9
5,243,291	-		GFF5247	0.54	-1.9
5,243,313	+		GFF5247	0.55	-1.0
5,243,321	-		GFF5247	0.56	-2.5
5,243,338	+		GFF5247	0.57	-0.2
5,243,342	-		GFF5247	0.57	-2.0
5,243,342	-		GFF5247	0.57	-2.2
5,243,353	+		GFF5247	0.58	-2.0
5,243,361	-		GFF5247	0.58	-2.4
5,243,378	+		GFF5247	0.60	-2.4
5,243,384	-		GFF5247	0.60	-0.6
5,243,386	+		GFF5247	0.60	-0.4
5,243,394	-		GFF5247	0.61	-1.4
5,243,401	-		GFF5247	0.61	-1.8
5,243,401	-		GFF5247	0.61	-1.0
5,243,413	+		GFF5247	0.62	-0.8
5,243,419	-		GFF5247	0.62	-1.2
5,243,446	+		GFF5247	0.64	-0.8
5,243,446	+		GFF5247	0.64	-1.8
5,243,447	+		GFF5247	0.64	-2.8
5,243,447	+		GFF5247	0.64	-1.6
5,243,447	+		GFF5247	0.64	-1.0
5,243,448	+		GFF5247	0.64	-1.8
5,243,448	+		GFF5247	0.64	-1.0
5,243,448	+		GFF5247	0.64	-2.2
5,243,448	-		GFF5247	0.64	-0.6
5,243,448	-		GFF5247	0.64	-0.8
5,243,454	-		GFF5247	0.65	-2.2
5,243,454	-		GFF5247	0.65	-3.0
5,243,455	-		GFF5247	0.65	-2.2
5,243,456	-		GFF5247	0.65	-1.4
5,243,456	-		GFF5247	0.65	-1.3
5,243,478	+		GFF5247	0.66	-1.9
5,243,478	+		GFF5247	0.66	-1.8
5,243,478	+		GFF5247	0.66	-1.6
5,243,478	+		GFF5247	0.66	-0.1
5,243,478	+		GFF5247	0.66	-1.3
5,243,478	+		GFF5247	0.66	-1.6
5,243,481	-		GFF5247	0.67	+1.7
5,243,486	-		GFF5247	0.67	-0.1
5,243,486	-		GFF5247	0.67	-2.4
5,243,486	-		GFF5247	0.67	-1.6
5,243,486	-		GFF5247	0.67	-1.2
5,243,486	-		GFF5247	0.67	-1.3
5,243,486	-		GFF5247	0.67	-2.6
5,243,486	-		GFF5247	0.67	-1.8
5,243,488	-		GFF5247	0.67	-2.0
5,243,564	+		GFF5247	0.72	-2.5
5,243,564	+		GFF5247	0.72	-2.7
5,243,564	+		GFF5247	0.72	-1.0
5,243,564	+		GFF5247	0.72	+0.6
5,243,564	+		GFF5247	0.72	+0.6
5,243,564	+		GFF5247	0.72	+0.3
5,243,564	+		GFF5247	0.72	-0.3
5,243,564	+		GFF5247	0.72	-1.5
5,243,571	-		GFF5247	0.73	-1.8
5,243,572	-		GFF5247	0.73	-1.7
5,243,572	-		GFF5247	0.73	-2.4
5,243,572	-		GFF5247	0.73	-0.3
5,243,605	-		GFF5247	0.75	-1.4
5,243,631	+		GFF5247	0.77	-1.0
5,243,631	+		GFF5247	0.77	-2.0
5,243,631	+		GFF5247	0.77	+0.0
5,243,631	+		GFF5247	0.77	-0.1
5,243,634	+		GFF5247	0.77	-2.7
5,243,636	+		GFF5247	0.77	-0.6
5,243,639	-		GFF5247	0.78	-2.4
5,243,639	-		GFF5247	0.78	-0.6
5,243,639	-		GFF5247	0.78	-0.8
5,243,639	-		GFF5247	0.78	-3.0
5,243,639	-		GFF5247	0.78	-1.6
5,243,639	-		GFF5247	0.78	-2.3
5,243,639	-		GFF5247	0.78	-2.2
5,243,649	+		GFF5247	0.78	-2.8
5,243,664	+		GFF5247	0.79	-2.4
5,243,678	-		GFF5247	0.80	-0.4
5,243,684	-		GFF5247	0.81	-0.9
5,243,691	+		GFF5247	0.81	-1.4
5,243,699	-		GFF5247	0.82	-2.3
5,243,701	-		GFF5247	0.82	-3.2
5,243,701	-		GFF5247	0.82	-1.4
5,243,724	-		GFF5247	0.83	-1.6
5,243,732	+		GFF5247	0.84	-1.0
5,243,740	+		GFF5247	0.84	-2.6
5,243,740	-		GFF5247	0.84	-2.4
5,243,749	+		GFF5247	0.85	-1.6
5,243,755	+		GFF5247	0.85	-2.2
5,243,763	-		GFF5247	0.86	-2.0
5,243,763	-		GFF5247	0.86	-2.9
5,243,811	+		GFF5247	0.89	-0.4
5,243,811	+		GFF5247	0.89	-1.5
5,243,811	+		GFF5247	0.89	-2.0
5,243,811	+		GFF5247	0.89	-2.2
5,243,819	-		GFF5247	0.90	-2.2
5,243,836	-				-0.1
5,243,838	+				-1.5
5,243,838	+				-2.3
5,243,838	+				-1.9
5,243,838	+				-1.6
5,243,846	-				-0.3
5,243,851	-				-1.6
5,243,856	+				-0.4
5,243,856	+				-0.8
5,243,864	-				-1.4
5,243,883	-				-1.4
5,243,884	+				-0.5
5,243,884	+				-2.2
5,243,884	+				-1.0
5,243,884	+				-1.1
5,243,884	+				+1.1
5,243,888	-				-2.1
5,243,889	+				+0.4
5,243,889	+				-1.9
5,243,892	-				+0.2
5,243,892	-				-0.4
5,243,892	-				-0.7
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5,243,897	-				-2.0
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5,243,902	-				-1.8
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5,243,907	-				-1.9
5,243,928	-				-2.5
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