Strain Fitness in Sphingobium sp. HT1-2 around GFF5186

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,178,423	+		GFF5185	0.60	-0.8
5,178,451	-		GFF5185	0.61	+2.0
5,178,458	+		GFF5185	0.62	-0.9
5,178,468	-		GFF5185	0.62	-0.3
5,178,476	+		GFF5185	0.63	-1.6
5,178,476	+		GFF5185	0.63	-1.1
5,178,524	-		GFF5185	0.65	+0.6
5,178,533	+		GFF5185	0.66	+1.6
5,178,543	+		GFF5185	0.66	-0.6
5,178,548	+		GFF5185	0.66	-1.8
5,178,551	-		GFF5185	0.66	+0.4
5,178,556	-		GFF5185	0.67	+0.2
5,178,600	+		GFF5185	0.69	+0.4
5,178,615	+		GFF5185	0.70	+0.7
5,178,643	+		GFF5185	0.71	+1.6
5,178,700	+		GFF5185	0.74	-0.8
5,178,723	+		GFF5185	0.75	-0.4
5,178,792	-		GFF5185	0.79	-2.9
5,178,792	-		GFF5185	0.79	-1.6
5,178,812	-		GFF5185	0.80	-1.8
5,178,819	+		GFF5185	0.80	-0.6
5,178,822	-		GFF5185	0.80	-0.6
5,178,831	+		GFF5185	0.81	-1.6
5,178,886	+		GFF5185	0.83	-2.0
5,178,886	+		GFF5185	0.83	+0.6
5,178,888	+		GFF5185	0.84	-1.8
5,178,921	-		GFF5185	0.85	+1.7
5,178,923	-		GFF5185	0.85	-0.9
5,178,925	+		GFF5185	0.85	-0.2
5,178,930	+		GFF5185	0.86	-1.8
5,178,938	-		GFF5185	0.86	+0.4
5,178,938	-		GFF5185	0.86	+0.9
5,178,938	-		GFF5185	0.86	-0.5
5,178,943	+		GFF5185	0.86	-1.0
5,178,948	+		GFF5185	0.87	-0.0
5,178,989	+		GFF5185	0.89	+0.0
5,178,989	+		GFF5185	0.89	-1.5
5,178,989	+		GFF5185	0.89	+1.2
5,178,989	+		GFF5185	0.89	-2.0
5,178,989	+		GFF5185	0.89	-0.2
5,178,989	+		GFF5185	0.89	-1.4
5,178,989	+		GFF5185	0.89	+0.0
5,178,991	+		GFF5185	0.89	-0.1
5,178,997	-		GFF5185	0.89	-2.2
5,178,997	-		GFF5185	0.89	-0.4
5,178,997	-		GFF5185	0.89	-0.5
5,178,997	-		GFF5185	0.89	-2.5
5,178,997	-		GFF5185	0.89	-0.3
5,178,997	-		GFF5185	0.89	-0.7
5,178,997	-		GFF5185	0.89	-1.6
5,178,997	-		GFF5185	0.89	-0.3
5,179,013	+		GFF5185	0.90	+0.1
5,179,013	+		GFF5185	0.90	-1.4
5,179,013	+		GFF5185	0.90	+1.2
5,179,020	-				+1.5
5,179,021	-				+1.2
5,179,021	-				-1.3
5,179,040	-				-1.8
5,179,051	-				-1.1
5,179,064	+				+0.7
5,179,069	-				-1.7
5,179,080	+				-1.6
5,179,080	+				-2.4
5,179,084	+				-0.3
5,179,087	+				+1.8
5,179,088	-				+0.6
5,179,093	+				+0.1
5,179,103	+				-1.7
5,179,103	+				-0.5
5,179,111	-				+0.4
5,179,111	-				+1.1
5,179,111	-				-1.1
5,179,113	+				-0.4
5,179,113	+				-1.8
5,179,113	+				+0.9
5,179,113	+				-0.2
5,179,113	+				+0.6
5,179,113	+				+1.0
5,179,113	-				-0.2
5,179,119	-				-0.5
5,179,122	+				+1.0
5,179,127	+				+0.0
5,179,127	+				-0.4
5,179,130	-				-0.7
5,179,130	-				-0.3
5,179,130	-				+1.3
5,179,132	+				+0.4
5,179,132	+				-0.6
5,179,132	+				-0.1
5,179,132	+				-0.1
5,179,132	+				+0.5
5,179,140	-				-2.0
5,179,140	-				+0.6
5,179,140	-				+0.2
5,179,140	-				-0.4
5,179,140	-				-0.4
5,179,143	+				+0.5
5,179,151	-				+0.2
5,179,196	-				-0.3
5,179,231	+				-1.6
5,179,234	-				-0.7
5,179,236	+				-1.4
5,179,236	+				-0.6
5,179,236	+				+0.1
5,179,243	+				+0.6
5,179,244	-				-0.3
5,179,244	-				+0.0
5,179,244	-				+0.1
5,179,244	-				-1.4
5,179,273	-				-0.5
5,179,279	+				-0.3
5,179,292	-				+0.3
5,179,293	+				-1.6
5,179,331	-				-1.4
5,179,336	+				-1.7
5,179,352	+				-0.0
5,179,360	-				+0.3
5,179,395	-				-0.9
5,179,403	+				-0.8
5,179,403	+				+0.2
5,179,420	+				-1.8
5,179,459	-				+0.7
5,179,499	+		GFF5186	0.19	-1.5
5,179,499	+		GFF5186	0.19	+0.9
5,179,499	+		GFF5186	0.19	-0.8
5,179,499	+		GFF5186	0.19	+0.0
5,179,499	+		GFF5186	0.19	-0.9
5,179,499	+		GFF5186	0.19	-0.4
5,179,499	+		GFF5186	0.19	-0.8
5,179,499	+		GFF5186	0.19	+1.3
5,179,499	+		GFF5186	0.19	+0.2
5,179,499	+		GFF5186	0.19	+0.5
5,179,499	+		GFF5186	0.19	-0.5
5,179,499	+		GFF5186	0.19	+0.8
5,179,499	+		GFF5186	0.19	+1.6
5,179,499	+		GFF5186	0.19	+0.8
5,179,499	+		GFF5186	0.19	-0.1
5,179,499	+		GFF5186	0.19	-2.4
5,179,499	+		GFF5186	0.19	-0.5
5,179,507	-		GFF5186	0.21	-0.6
5,179,507	-		GFF5186	0.21	-2.2
5,179,507	-		GFF5186	0.21	-1.8
5,179,507	-		GFF5186	0.21	-0.8
5,179,507	-		GFF5186	0.21	+1.0
5,179,507	-		GFF5186	0.21	-0.1
5,179,507	-		GFF5186	0.21	+1.4
5,179,507	-		GFF5186	0.21	+1.0
5,179,507	-		GFF5186	0.21	+0.6
5,179,507	-		GFF5186	0.21	-1.3
5,179,507	-		GFF5186	0.21	+0.7
5,179,507	-		GFF5186	0.21	+0.0
5,179,507	-		GFF5186	0.21	+0.1
5,179,507	-		GFF5186	0.21	+0.5
5,179,507	-		GFF5186	0.21	-0.4
5,179,507	-		GFF5186	0.21	-0.8
5,179,507	-		GFF5186	0.21	-0.1
5,179,507	-		GFF5186	0.21	+0.8
5,179,507	-		GFF5186	0.21	+0.2
5,179,507	-		GFF5186	0.21	+0.4
5,179,507	-		GFF5186	0.21	+1.9
5,179,508	-		GFF5186	0.21	+1.3
5,179,509	+		GFF5186	0.21	-0.2
5,179,509	+		GFF5186	0.21	+0.8
5,179,517	-		GFF5186	0.23	-0.2
5,179,517	-		GFF5186	0.23	+0.9
5,179,519	+		GFF5186	0.24	+0.7
5,179,527	-		GFF5186	0.25	+0.9
5,179,527	-		GFF5186	0.25	-0.8
5,179,564	-		GFF5186	0.34	+0.5
5,179,571	-		GFF5186	0.36	-2.5
5,179,571	-		GFF5186	0.36	-0.3
5,179,573	+		GFF5186	0.36	+0.7
5,179,573	+		GFF5186	0.36	-0.1
5,179,581	-		GFF5186	0.38	-1.3
5,179,588	+		GFF5186	0.40	-2.2
5,179,588	+		GFF5186	0.40	+0.1
5,179,596	+		GFF5186	0.42	-1.3
5,179,596	-		GFF5186	0.42	+0.3
5,179,596	-		GFF5186	0.42	-1.4
5,179,596	-		GFF5186	0.42	-0.6
5,179,596	-		GFF5186	0.42	+0.9
5,179,596	-		GFF5186	0.42	+0.3
5,179,608	+		GFF5186	0.45	+0.3
5,179,616	-		GFF5186	0.47	+0.9
5,179,616	-		GFF5186	0.47	+0.3
5,179,616	-		GFF5186	0.47	+1.0
5,179,618	+		GFF5186	0.47	-0.2
5,179,638	+		GFF5186	0.52	+0.2
5,179,638	+		GFF5186	0.52	+0.4
5,179,667	+		GFF5186	0.59	+0.9
5,179,675	-		GFF5186	0.61	+0.6
5,179,720	+		GFF5186	0.72	+1.0
5,179,742	+		GFF5186	0.77	+0.3
5,179,766	-		GFF5186	0.83	-0.8
5,179,768	+		GFF5186	0.83	-0.2
5,179,768	+		GFF5186	0.83	+2.1
5,179,776	-		GFF5186	0.85	+0.9
5,179,776	-		GFF5186	0.85	+0.6
5,179,793	+		GFF5186	0.89	-0.6
5,179,851	+				-0.1
5,179,856	+				-0.9
5,179,856	+				+1.6
5,179,857	-				+1.0
5,179,880	+				-0.9
5,179,880	+				-2.3
5,179,880	+				-1.8
5,179,880	+				-1.0
5,179,880	+				+1.0
5,179,888	-				+0.4
5,179,888	-				+1.5
5,179,890	+				+0.5
5,179,905	+				+1.5
5,179,906	+				+0.8
5,179,906	+				-0.6
5,179,913	-				-0.8
5,179,924	+				-1.3
5,179,932	+				+1.0
5,179,932	+				-0.0
5,179,932	-				-0.2
5,179,938	+				-0.9
5,179,938	+				+0.8
5,179,946	-				+0.2
5,179,946	-				-0.1
5,179,946	-				-0.7
5,179,974	+				+0.3
5,179,977	-				-0.7
5,179,978	-				+0.2
5,179,984	-				-1.2
5,180,030	+				+0.5
5,180,042	+				-0.4
5,180,042	+				-0.8
5,180,042	+				+1.0
5,180,042	+				-1.0
5,180,042	+				-0.1
5,180,043	-				-0.7
5,180,050	-				-0.2
5,180,050	-				-0.3
5,180,050	-				-1.2
5,180,050	-				+0.6
5,180,050	-				-0.0
5,180,050	-				-0.9
5,180,050	-				+0.8
5,180,050	-				-0.4
5,180,050	-				-0.5
5,180,050	-				-2.2
5,180,050	-				+0.1
5,180,050	-				+1.1
5,180,051	+				-0.8
5,180,051	+				+0.8
5,180,059	-				+0.0
5,180,078	+				+0.4
5,180,116	-				-0.4
5,180,136	+				-0.4
5,180,136	+				+0.7
5,180,144	-		GFF5187	0.10	+1.5
5,180,144	-		GFF5187	0.10	-0.3
5,180,144	-		GFF5187	0.10	+1.3
5,180,163	+		GFF5187	0.11	-1.2
5,180,163	+		GFF5187	0.11	+0.1
5,180,163	+		GFF5187	0.11	+0.2
5,180,163	+		GFF5187	0.11	-0.6
5,180,163	+		GFF5187	0.11	+0.0
5,180,171	-		GFF5187	0.12	+0.8
5,180,171	-		GFF5187	0.12	+0.9
5,180,234	+		GFF5187	0.15	-1.7
5,180,234	-		GFF5187	0.15	+0.7
5,180,242	-		GFF5187	0.15	+0.4
5,180,248	-		GFF5187	0.15	+0.6
5,180,254	+		GFF5187	0.16	-0.4
5,180,254	+		GFF5187	0.16	-0.3
5,180,254	+		GFF5187	0.16	+0.4
5,180,254	+		GFF5187	0.16	-0.4
5,180,254	+		GFF5187	0.16	-0.4
5,180,254	+		GFF5187	0.16	+0.8
5,180,254	+		GFF5187	0.16	+0.5
5,180,254	+		GFF5187	0.16	-0.9
5,180,254	+		GFF5187	0.16	-2.1
5,180,262	-		GFF5187	0.16	+1.0
5,180,262	-		GFF5187	0.16	-0.2
5,180,262	-		GFF5187	0.16	-0.9
5,180,262	-		GFF5187	0.16	-0.9
5,180,262	-		GFF5187	0.16	+1.2
5,180,262	-		GFF5187	0.16	-0.6
5,180,262	-		GFF5187	0.16	-1.7
5,180,262	-		GFF5187	0.16	+0.3
5,180,262	-		GFF5187	0.16	-0.2
5,180,262	-		GFF5187	0.16	-0.6
5,180,262	-		GFF5187	0.16	-1.1
5,180,266	+		GFF5187	0.16	-0.3
5,180,287	-		GFF5187	0.17	+1.5
5,180,287	-		GFF5187	0.17	-2.0
5,180,305	+		GFF5187	0.18	-1.6
5,180,308	-		GFF5187	0.18	-0.8
5,180,310	+		GFF5187	0.18	-0.1
5,180,334	-		GFF5187	0.20	-0.4
5,180,342	+		GFF5187	0.20	+0.5
5,180,342	+		GFF5187	0.20	-0.2
5,180,350	-		GFF5187	0.20	+0.7
5,180,351	+		GFF5187	0.20	+0.4
5,180,351	+		GFF5187	0.20	+0.4
5,180,359	-		GFF5187	0.21	+0.8
5,180,361	+		GFF5187	0.21	+0.4
5,180,369	-		GFF5187	0.21	+0.7
5,180,369	-		GFF5187	0.21	-0.3
5,180,369	-		GFF5187	0.21	+0.8
5,180,369	-		GFF5187	0.21	+0.9
5,180,380	-		GFF5187	0.22	-0.5
5,180,385	+		GFF5187	0.22	-2.1
5,180,404	+		GFF5187	0.23	-2.1
5,180,412	-		GFF5187	0.23	+0.4
5,180,446	+		GFF5187	0.25	+1.4
5,180,454	-		GFF5187	0.25	-1.9
5,180,480	-		GFF5187	0.27	-1.0
5,180,496	+		GFF5187	0.27	+1.0
5,180,506	+		GFF5187	0.28	-0.5
5,180,521	+		GFF5187	0.29	+0.1
5,180,521	+		GFF5187	0.29	-1.5
5,180,523	+		GFF5187	0.29	+0.7
5,180,547	-		GFF5187	0.30	+1.7
5,180,572	-		GFF5187	0.31	+1.5
5,180,577	+		GFF5187	0.31	-1.8
5,180,577	+		GFF5187	0.31	-1.6
5,180,587	+		GFF5187	0.32	+0.3
5,180,600	-		GFF5187	0.33	-0.2
5,180,601	+		GFF5187	0.33	+0.8
5,180,605	-		GFF5187	0.33	+0.2
5,180,609	-		GFF5187	0.33	-0.4
5,180,619	-		GFF5187	0.33	+1.3
5,180,635	+		GFF5187	0.34	-0.6
5,180,643	-		GFF5187	0.35	+0.3
5,180,643	-		GFF5187	0.35	+0.6
5,180,643	-		GFF5187	0.35	+0.0
5,180,645	+		GFF5187	0.35	+0.9
5,180,645	+		GFF5187	0.35	-2.1
5,180,645	+		GFF5187	0.35	-0.0
5,180,653	-		GFF5187	0.35	-0.2
5,180,666	-		GFF5187	0.36	-1.9
5,180,676	+		GFF5187	0.36	-0.4
5,180,676	+		GFF5187	0.36	-0.3
5,180,717	+		GFF5187	0.38	+1.5
5,180,717	+		GFF5187	0.38	-0.1
5,180,725	+		GFF5187	0.39	-0.4
5,180,725	-		GFF5187	0.39	+0.0
5,180,727	+		GFF5187	0.39	-1.6
5,180,730	+		GFF5187	0.39	-1.6
5,180,733	-		GFF5187	0.39	-0.6
5,180,733	-		GFF5187	0.39	+0.7
5,180,733	-		GFF5187	0.39	+0.9
5,180,735	-		GFF5187	0.39	+0.6
5,180,757	+		GFF5187	0.40	+0.5
5,180,765	-		GFF5187	0.41	+1.0
5,180,775	+		GFF5187	0.41	+0.4
5,180,813	+		GFF5187	0.43	+0.0
5,180,821	-		GFF5187	0.43	-0.4
5,180,823	+		GFF5187	0.43	+0.1