Strain Fitness in Sphingobium sp. HT1-2 around GFF5160

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,151,537	-		GFF5158	0.69	-0.2
5,151,547	-		GFF5158	0.70	-0.9
5,151,552	+		GFF5158	0.70	-0.1
5,151,557	+		GFF5158	0.70	-2.5
5,151,557	+		GFF5158	0.70	-1.1
5,151,557	+		GFF5158	0.70	+0.4
5,151,557	+		GFF5158	0.70	+1.3
5,151,557	+		GFF5158	0.70	-0.5
5,151,557	+		GFF5158	0.70	-1.4
5,151,565	-		GFF5158	0.71	-1.3
5,151,565	-		GFF5158	0.71	-1.3
5,151,565	-		GFF5158	0.71	-0.3
5,151,565	-		GFF5158	0.71	-1.6
5,151,567	+		GFF5158	0.71	-2.5
5,151,569	+		GFF5158	0.71	-0.3
5,151,574	+		GFF5158	0.71	-2.1
5,151,575	-		GFF5158	0.71	-0.3
5,151,579	+		GFF5158	0.71	-0.4
5,151,623	+		GFF5158	0.74	-1.5
5,151,632	+		GFF5158	0.74	+0.2
5,151,633	+		GFF5158	0.74	-0.7
5,151,633	+		GFF5158	0.74	-0.8
5,151,640	-		GFF5158	0.74	+1.3
5,151,641	-		GFF5158	0.75	+0.3
5,151,648	+		GFF5158	0.75	-0.2
5,151,654	+		GFF5158	0.75	-0.0
5,151,654	+		GFF5158	0.75	+1.2
5,151,660	-		GFF5158	0.76	-2.9
5,151,662	-		GFF5158	0.76	-0.3
5,151,662	-		GFF5158	0.76	+1.0
5,151,672	+		GFF5158	0.76	-0.7
5,151,672	+		GFF5158	0.76	-1.3
5,151,674	+		GFF5158	0.76	-0.8
5,151,683	+		GFF5158	0.77	-0.5
5,151,683	+		GFF5158	0.77	-2.1
5,151,684	+		GFF5158	0.77	+0.4
5,151,692	-		GFF5158	0.77	-0.6
5,151,711	-		GFF5158	0.78	-2.4
5,151,726	+		GFF5158	0.79	-0.7
5,151,734	-		GFF5158	0.79	-2.7
5,151,757	-		GFF5158	0.81	-1.8
5,151,759	+		GFF5158	0.81	-2.6
5,151,761	-		GFF5158	0.81	+0.5
5,151,778	-		GFF5158	0.82	+0.4
5,151,784	-		GFF5158	0.82	-1.7
5,151,786	-		GFF5158	0.82	-2.2
5,151,795	-		GFF5158	0.83	-1.1
5,151,799	+		GFF5158	0.83	-0.4
5,151,800	-		GFF5158	0.83	-2.0
5,151,807	-		GFF5158	0.83	+0.0
5,151,841	+		GFF5158	0.85	-1.2
5,151,843	+		GFF5158	0.85	-0.3
5,151,863	+		GFF5158	0.86	+0.7
5,151,863	+		GFF5158	0.86	-0.1
5,151,865	+		GFF5158	0.86	-0.9
5,151,871	-		GFF5158	0.87	+1.3
5,151,871	-		GFF5158	0.87	-2.3
5,151,871	-		GFF5158	0.87	+0.2
5,151,871	-		GFF5158	0.87	-1.9
5,151,871	-		GFF5158	0.87	-1.5
5,151,880	-		GFF5158	0.87	-0.3
5,151,892	-		GFF5158	0.88	-2.3
5,151,893	-		GFF5158	0.88	-0.2
5,151,903	+		GFF5158	0.88	-0.0
5,151,911	-		GFF5158	0.89	+0.9
5,151,915	+		GFF5158	0.89	-0.7
5,151,926	+		GFF5158	0.90	-0.2
5,151,948	+				+0.4
5,151,962	+				-2.3
5,151,970	-				-0.3
5,151,997	+				+0.3
5,152,003	+				-2.7
5,152,011	-				-1.2
5,152,018	-				+0.3
5,152,055	+				+0.1
5,152,055	+				+0.2
5,152,057	+				+0.6
5,152,062	+				+0.3
5,152,063	-				-0.2
5,152,065	-				-0.0
5,152,075	-				-2.8
5,152,085	+				-1.5
5,152,085	-				-1.1
5,152,094	-				+0.1
5,152,101	+				-2.7
5,152,104	-				-1.1
5,152,109	-				+0.3
5,152,140	+				-1.2
5,152,153	-				-0.2
5,152,192	+				-1.6
5,152,192	+				-0.5
5,152,192	+				-0.3
5,152,192	+				-0.2
5,152,200	-				-1.1
5,152,200	-				+0.1
5,152,202	+				-2.3
5,152,210	-				-0.5
5,152,210	-				+0.4
5,152,212	+				-0.1
5,152,219	+				-0.0
5,152,225	+		GFF5159	0.10	-1.8
5,152,233	-		GFF5159	0.13	-0.6
5,152,234	+		GFF5159	0.13	-1.3
5,152,234	+		GFF5159	0.13	-0.7
5,152,234	+		GFF5159	0.13	-0.9
5,152,234	+		GFF5159	0.13	-0.6
5,152,234	+		GFF5159	0.13	-0.2
5,152,234	+		GFF5159	0.13	-0.1
5,152,234	+		GFF5159	0.13	+0.8
5,152,242	-		GFF5159	0.15	+0.1
5,152,242	-		GFF5159	0.15	-0.7
5,152,242	-		GFF5159	0.15	-0.2
5,152,242	-		GFF5159	0.15	-0.6
5,152,242	-		GFF5159	0.15	-1.0
5,152,242	-		GFF5159	0.15	-2.2
5,152,242	-		GFF5159	0.15	-0.4
5,152,256	+		GFF5159	0.19	-0.5
5,152,256	+		GFF5159	0.19	-0.6
5,152,264	-		GFF5159	0.22	-1.2
5,152,264	-		GFF5159	0.22	-0.9
5,152,264	-		GFF5159	0.22	-1.5
5,152,279	-		GFF5159	0.26	-0.7
5,152,279	-		GFF5159	0.26	-0.2
5,152,279	-		GFF5159	0.26	-0.9
5,152,284	+		GFF5159	0.27	-0.7
5,152,284	+		GFF5159	0.27	-2.1
5,152,292	-		GFF5159	0.30	-0.5
5,152,297	-		GFF5159	0.31	-0.8
5,152,301	+		GFF5159	0.32	-2.0
5,152,303	+		GFF5159	0.33	-0.2
5,152,309	-		GFF5159	0.35	-0.9
5,152,330	+		GFF5159	0.41	+0.6
5,152,330	+		GFF5159	0.41	-0.7
5,152,343	-		GFF5159	0.45	-0.8
5,152,343	-		GFF5159	0.45	-0.4
5,152,356	-		GFF5159	0.49	-0.9
5,152,356	-		GFF5159	0.49	+0.7
5,152,383	+		GFF5159	0.56	-2.3
5,152,391	-		GFF5159	0.59	+0.8
5,152,391	-		GFF5159	0.59	-0.3
5,152,411	+		GFF5159	0.65	-1.7
5,152,416	+		GFF5159	0.66	+0.2
5,152,424	-		GFF5159	0.68	-1.1
5,152,433	+		GFF5159	0.71	-0.7
5,152,433	+		GFF5159	0.71	-0.6
5,152,433	+		GFF5159	0.71	-2.0
5,152,433	+		GFF5159	0.71	-1.0
5,152,441	-		GFF5159	0.73	-2.0
5,152,441	-		GFF5159	0.73	-2.5
5,152,442	+		GFF5159	0.74	-1.2
5,152,442	+		GFF5159	0.74	-0.6
5,152,442	+		GFF5159	0.74	-0.4
5,152,443	+		GFF5159	0.74	-0.9
5,152,444	+		GFF5159	0.74	-0.4
5,152,450	-		GFF5159	0.76	-0.4
5,152,450	-		GFF5159	0.76	-0.7
5,152,450	-		GFF5159	0.76	-0.8
5,152,451	+		GFF5159	0.76	+1.0
5,152,451	-		GFF5159	0.76	-0.8
5,152,451	-		GFF5159	0.76	-2.0
5,152,466	+		GFF5159	0.81	-2.1
5,152,473	+		GFF5159	0.83	-1.3
5,152,478	+		GFF5159	0.84	-0.3
5,152,483	+		GFF5159	0.86	+0.5
5,152,488	+		GFF5159	0.87	-1.3
5,152,493	+		GFF5159	0.89	-0.5
5,152,496	-		GFF5159	0.89	-0.2
5,152,496	-		GFF5159	0.89	-2.1
5,152,496	-		GFF5159	0.89	-0.1
5,152,503	+				-0.7
5,152,511	-				-0.5
5,152,511	-				-1.2
5,152,521	+				-0.3
5,152,526	+				-0.2
5,152,526	+				-0.9
5,152,529	-				+0.2
5,152,534	-				+0.0
5,152,538	+				-0.4
5,152,539	+				-1.6
5,152,539	-				-0.5
5,152,585	-		GFF5160	0.18	-0.6
5,152,598	-		GFF5160	0.23	-1.7
5,152,608	+		GFF5160	0.26	+0.4
5,152,616	-		GFF5160	0.28	-1.3
5,152,618	+		GFF5160	0.29	+0.3
5,152,621	-		GFF5160	0.30	-0.1
5,152,626	-		GFF5160	0.32	-1.6
5,152,648	-		GFF5160	0.39	-1.0
5,152,665	+		GFF5160	0.44	-3.4
5,152,668	-		GFF5160	0.45	-0.6
5,152,675	+		GFF5160	0.48	-0.5
5,152,681	+		GFF5160	0.50	-0.8
5,152,689	-		GFF5160	0.52	-0.1
5,152,689	-		GFF5160	0.52	-0.7
5,152,689	-		GFF5160	0.52	-0.7
5,152,699	-		GFF5160	0.55	-2.8
5,152,699	-		GFF5160	0.55	+0.9
5,152,704	-		GFF5160	0.57	-1.3
5,152,704	-		GFF5160	0.57	+1.5
5,152,716	-		GFF5160	0.61	-0.4
5,152,718	-		GFF5160	0.61	-1.9
5,152,968	+				-2.8
5,152,990	+				-1.1
5,153,006	-				-1.6
5,153,006	-				-2.3
5,153,008	+				-1.7
5,153,011	+				-0.6
5,153,019	+				+0.7
5,153,019	+				-1.8
5,153,019	+				-1.6
5,153,019	+				-0.5
5,153,019	-				-2.7
5,153,020	+				+1.0
5,153,027	+				-0.8
5,153,027	+				+1.6
5,153,027	+				-2.1
5,153,027	+				-0.6
5,153,027	-				-2.7
5,153,028	-				-1.3
5,153,035	-				-1.8
5,153,069	+				+0.3
5,153,069	+				-0.5
5,153,069	+				-2.2
5,153,069	+				-1.3
5,153,069	+				-0.4
5,153,069	+				+0.3
5,153,069	+				+1.1
5,153,069	+				-0.8
5,153,069	+				-1.7
5,153,069	+				-0.7
5,153,069	+				-0.4
5,153,069	+				+0.1
5,153,069	+				-0.7
5,153,069	+				-0.8
5,153,069	+				-1.3
5,153,069	+				+0.3
5,153,069	+				+0.5
5,153,069	+				-0.4
5,153,069	+				-1.5
5,153,069	+				-0.2
5,153,069	+				-0.4
5,153,069	+				+0.5
5,153,069	+				-1.0
5,153,069	+				-3.0
5,153,069	+				-0.9
5,153,069	+				-0.0
5,153,069	+				-0.3
5,153,069	+				+0.4
5,153,069	+				-1.9
5,153,069	+				+1.3
5,153,069	+				-0.3
5,153,069	+				-0.5
5,153,069	+				-0.0
5,153,069	+				-0.2
5,153,069	+				-0.4
5,153,069	+				+0.9
5,153,069	+				+1.2
5,153,069	+				+0.2
5,153,069	+				-2.9
5,153,069	+				+0.1
5,153,069	+				-0.5
5,153,069	+				-0.7
5,153,077	-				-0.9
5,153,077	-				-1.9
5,153,077	-				-2.4
5,153,077	-				-2.3
5,153,077	-				-2.8
5,153,077	-				-2.1
5,153,077	-				-0.5
5,153,077	-				-0.7
5,153,077	-				-0.9
5,153,077	-				-2.3
5,153,077	-				-1.8
5,153,077	-				-3.0
5,153,080	+				-0.1
5,153,088	-				-1.6
5,153,132	-		GFF5161	0.14	+0.8
5,153,154	-		GFF5161	0.17	-3.9
5,153,171	+		GFF5161	0.20	-0.7
5,153,173	+		GFF5161	0.20	-1.6
5,153,173	+		GFF5161	0.20	+0.7
5,153,174	-		GFF5161	0.20	-0.6
5,153,176	+		GFF5161	0.20	-0.6
5,153,202	-		GFF5161	0.24	+0.3
5,153,204	+		GFF5161	0.24	-2.5
5,153,212	-		GFF5161	0.25	-1.3
5,153,227	-		GFF5161	0.27	-0.9
5,153,227	-		GFF5161	0.27	-1.8
5,153,270	-		GFF5161	0.33	-1.7
5,153,270	-		GFF5161	0.33	-1.0
5,153,270	-		GFF5161	0.33	-1.7
5,153,270	-		GFF5161	0.33	-0.1
5,153,292	-		GFF5161	0.36	-0.3
5,153,303	-		GFF5161	0.37	-1.6
5,153,328	+		GFF5161	0.40	-1.6
5,153,331	+		GFF5161	0.41	-0.2
5,153,357	+		GFF5161	0.44	+0.0
5,153,417	-		GFF5161	0.52	-0.5
5,153,442	+		GFF5161	0.55	-2.5
5,153,442	+		GFF5161	0.55	-1.3
5,153,448	-		GFF5161	0.56	-1.4
5,153,450	-		GFF5161	0.56	-2.8
5,153,483	+		GFF5161	0.61	-0.7
5,153,503	-		GFF5161	0.63	+0.9
5,153,503	-		GFF5161	0.63	-0.7
5,153,507	+		GFF5161	0.64	+0.8
5,153,512	+		GFF5161	0.65	-0.7
5,153,517	+		GFF5161	0.65	+0.3
5,153,517	+		GFF5161	0.65	+1.2
5,153,517	+		GFF5161	0.65	-0.0
5,153,517	+		GFF5161	0.65	-1.1
5,153,517	+		GFF5161	0.65	+0.2
5,153,517	+		GFF5161	0.65	+0.1
5,153,517	+		GFF5161	0.65	+0.1
5,153,517	+		GFF5161	0.65	-0.7
5,153,517	+		GFF5161	0.65	-1.8
5,153,517	+		GFF5161	0.65	+0.2
5,153,517	+		GFF5161	0.65	-0.2
5,153,517	+		GFF5161	0.65	-1.3
5,153,520	-		GFF5161	0.66	-1.6
5,153,522	+		GFF5161	0.66	-0.9
5,153,522	+		GFF5161	0.66	-1.0
5,153,522	+		GFF5161	0.66	-0.2
5,153,522	+		GFF5161	0.66	-1.5
5,153,522	+		GFF5161	0.66	-0.7
5,153,524	+		GFF5161	0.66	-1.8
5,153,525	-		GFF5161	0.66	-0.9
5,153,525	-		GFF5161	0.66	-2.5
5,153,525	-		GFF5161	0.66	-0.0
5,153,525	-		GFF5161	0.66	-0.5
5,153,525	-		GFF5161	0.66	-2.7
5,153,530	-		GFF5161	0.67	-3.2
5,153,530	-		GFF5161	0.67	-2.6
5,153,540	-		GFF5161	0.68	-0.4
5,153,547	+		GFF5161	0.69	-2.7
5,153,555	-		GFF5161	0.70	+0.4
5,153,573	+		GFF5161	0.73	-1.7
5,153,573	+		GFF5161	0.73	-0.1
5,153,573	+		GFF5161	0.73	-2.6
5,153,579	+		GFF5161	0.74	-1.0
5,153,581	-		GFF5161	0.74	-0.3
5,153,599	+		GFF5161	0.76	+0.1
5,153,604	+		GFF5161	0.77	-0.3
5,153,646	+		GFF5161	0.82	-0.5
5,153,646	+		GFF5161	0.82	-0.0
5,153,646	+		GFF5161	0.82	-1.2
5,153,653	+		GFF5161	0.83	-1.6
5,153,654	-		GFF5161	0.83	-0.6
5,153,654	-		GFF5161	0.83	-1.0
5,153,654	-		GFF5161	0.83	-1.8
5,153,654	-		GFF5161	0.83	-0.1
5,153,672	+		GFF5161	0.86	+0.3
5,153,674	+		GFF5161	0.86	-1.1
5,153,676	-		GFF5161	0.86	-0.2
5,153,682	-		GFF5161	0.87	-0.8
5,153,695	-		GFF5161	0.89	-1.8
5,153,711	-				-1.7
5,153,800	+				-0.7
5,153,800	+				+0.3
5,153,808	-				+0.1
5,153,808	-				-1.2
5,153,808	-				-2.2
5,153,816	-				-1.2
5,153,822	+		GFF5162	0.10	-0.3
5,153,822	+		GFF5162	0.10	+0.5
5,153,822	+		GFF5162	0.10	-0.6
5,153,830	-		GFF5162	0.12	-0.8