Strain Fitness in Sphingobium sp. HT1-2 around GFF5152

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,143,986	-		GFF5150	0.88	-0.4
5,143,991	+		GFF5150	0.89	-0.6
5,143,997	+		GFF5150	0.90	-0.8
5,144,005	-				+0.4
5,144,014	-				-1.2
5,144,024	-				-0.4
5,144,028	+				-1.1
5,144,047	-				-0.9
5,144,068	-				-2.6
5,144,077	-				+0.5
5,144,077	-				-0.5
5,144,087	+				-1.0
5,144,087	+				-0.4
5,144,087	+				-0.2
5,144,089	-				-0.7
5,144,094	-				-2.7
5,144,095	-				-1.3
5,144,101	+				-2.1
5,144,102	+				-0.4
5,144,106	+				-1.3
5,144,110	-				-1.1
5,144,111	+				-0.2
5,144,114	+				-0.4
5,144,132	-				-0.1
5,144,136	+				-1.3
5,144,137	+				-1.0
5,144,137	-				+1.0
5,144,140	+				-0.9
5,144,142	+				-1.3
5,144,145	+				+0.5
5,144,145	-				+0.3
5,144,145	-				-1.3
5,144,147	+				-2.6
5,144,147	+				-0.7
5,144,147	+				-1.5
5,144,147	+				-0.2
5,144,147	+				-1.6
5,144,148	-				-1.3
5,144,148	-				+0.1
5,144,150	-				-0.3
5,144,155	-				-0.9
5,144,155	-				+0.2
5,144,187	-				-2.3
5,144,210	+				-0.2
5,144,210	+				-0.0
5,144,233	+				+0.5
5,144,247	+				+0.2
5,144,279	+				+1.1
5,144,281	+				-1.6
5,144,281	+				-0.6
5,144,281	+				-0.7
5,144,281	+				+0.1
5,144,281	+				+0.8
5,144,281	+				-1.1
5,144,281	+				+1.5
5,144,281	+				+0.4
5,144,281	+				-1.9
5,144,289	-				-0.2
5,144,289	-				+0.2
5,144,289	-				-0.5
5,144,289	-				+0.0
5,144,289	-				+1.4
5,144,289	-				-1.0
5,144,289	-				-0.2
5,144,303	+		GFF5151	0.11	-0.6
5,144,303	+		GFF5151	0.11	-2.5
5,144,311	-		GFF5151	0.13	-1.0
5,144,311	-		GFF5151	0.13	+0.6
5,144,342	-		GFF5151	0.17	-2.4
5,144,342	-		GFF5151	0.17	-0.8
5,144,350	+		GFF5151	0.18	-0.1
5,144,391	-		GFF5151	0.25	-2.4
5,144,460	+		GFF5151	0.35	-0.7
5,144,567	-		GFF5151	0.51	-3.1
5,144,676	+		GFF5151	0.68	-0.7
5,144,693	+		GFF5151	0.70	-0.4
5,144,693	+		GFF5151	0.70	+0.1
5,144,713	+		GFF5151	0.73	-0.8
5,144,713	+		GFF5151	0.73	-0.5
5,144,713	+		GFF5151	0.73	-0.9
5,144,713	+		GFF5151	0.73	-1.3
5,144,713	+		GFF5151	0.73	+0.4
5,144,713	+		GFF5151	0.73	-0.3
5,144,719	+		GFF5151	0.74	+0.4
5,144,721	-		GFF5151	0.74	-0.2
5,144,721	-		GFF5151	0.74	-1.8
5,144,721	-		GFF5151	0.74	+0.1
5,144,726	+		GFF5151	0.75	-0.6
5,144,737	+		GFF5151	0.77	+1.0
5,144,737	+		GFF5151	0.77	+0.4
5,144,785	+		GFF5151	0.84	-0.5
5,144,785	+		GFF5151	0.84	-1.2
5,144,785	+		GFF5151	0.84	-0.4
5,144,785	+		GFF5151	0.84	-0.2
5,144,814	+		GFF5151	0.88	-1.9
5,144,814	+		GFF5151	0.88	-1.9
5,144,836	+				-1.6
5,144,836	+				-1.5
5,144,836	+				-0.8
5,144,842	-				-0.7
5,144,842	-				-0.3
5,144,844	-				-0.6
5,144,844	-				-0.2
5,144,847	+				+0.7
5,144,847	+				-1.5
5,144,855	-				+1.0
5,144,862	+				+0.1
5,144,863	-				-1.3
5,144,872	+				-0.5
5,144,891	+				-1.5
5,144,901	+				+0.5
5,144,901	+				+0.0
5,144,902	+				-2.4
5,144,909	-				-0.9
5,144,909	-				-1.1
5,144,910	-				-0.3
5,144,925	-				-0.4
5,144,925	-				-1.0
5,144,934	+				-0.5
5,144,998	+				+0.2
5,144,999	+				-2.4
5,144,999	+				-0.7
5,144,999	+				-2.4
5,145,002	+				-1.2
5,145,004	+				-2.5
5,145,004	+				-0.1
5,145,004	+				+0.8
5,145,004	+				+0.9
5,145,004	+				+0.3
5,145,004	+				-0.8
5,145,004	+				-1.7
5,145,007	-				-2.1
5,145,009	+				-0.2
5,145,012	-				-1.8
5,145,012	-				-0.1
5,145,014	+				-0.8
5,145,017	-				-0.7
5,145,022	-		GFF5152	0.11	-0.5
5,145,023	-		GFF5152	0.11	-1.9
5,145,031	+		GFF5152	0.13	-3.4
5,145,031	+		GFF5152	0.13	-0.5
5,145,031	+		GFF5152	0.13	-1.0
5,145,039	-		GFF5152	0.15	-0.5
5,145,039	-		GFF5152	0.15	+0.1
5,145,039	-		GFF5152	0.15	-0.8
5,145,039	-		GFF5152	0.15	-0.7
5,145,041	+		GFF5152	0.16	-0.9
5,145,041	+		GFF5152	0.16	-1.6
5,145,048	-		GFF5152	0.18	-1.3
5,145,059	+		GFF5152	0.21	-0.2
5,145,063	+		GFF5152	0.22	-2.2
5,145,063	+		GFF5152	0.22	-0.7
5,145,067	-		GFF5152	0.23	-0.6
5,145,071	-		GFF5152	0.24	-1.2
5,145,091	+		GFF5152	0.29	-0.7
5,145,091	+		GFF5152	0.29	-1.1
5,145,099	+		GFF5152	0.31	+0.9
5,145,099	-		GFF5152	0.31	+0.2
5,145,101	+		GFF5152	0.32	-0.8
5,145,101	+		GFF5152	0.32	-2.0
5,145,101	+		GFF5152	0.32	-0.1
5,145,101	+		GFF5152	0.32	-0.4
5,145,101	+		GFF5152	0.32	-0.5
5,145,101	+		GFF5152	0.32	-0.7
5,145,109	-		GFF5152	0.34	+0.4
5,145,109	-		GFF5152	0.34	-1.0
5,145,109	-		GFF5152	0.34	+0.6
5,145,109	-		GFF5152	0.34	-0.2
5,145,109	-		GFF5152	0.34	-0.8
5,145,156	+		GFF5152	0.47	-1.3
5,145,167	+		GFF5152	0.50	-0.7
5,145,173	+		GFF5152	0.51	+0.7
5,145,199	-		GFF5152	0.58	-1.3
5,145,205	-		GFF5152	0.60	-0.4
5,145,212	+		GFF5152	0.62	-0.2
5,145,220	-		GFF5152	0.64	-0.5
5,145,244	+		GFF5152	0.70	-0.7
5,145,244	+		GFF5152	0.70	-1.4
5,145,244	+		GFF5152	0.70	-1.2
5,145,244	+		GFF5152	0.70	-0.5
5,145,244	+		GFF5152	0.70	-0.9
5,145,244	+		GFF5152	0.70	+0.5
5,145,244	+		GFF5152	0.70	-0.8
5,145,244	+		GFF5152	0.70	-0.4
5,145,244	+		GFF5152	0.70	-0.9
5,145,244	+		GFF5152	0.70	-1.3
5,145,244	+		GFF5152	0.70	-1.6
5,145,244	+		GFF5152	0.70	+1.0
5,145,244	+		GFF5152	0.70	-1.7
5,145,244	+		GFF5152	0.70	-1.6
5,145,244	+		GFF5152	0.70	-0.8
5,145,244	+		GFF5152	0.70	-1.8
5,145,244	+		GFF5152	0.70	-0.7
5,145,252	-		GFF5152	0.73	-0.2
5,145,252	-		GFF5152	0.73	-0.5
5,145,252	-		GFF5152	0.73	-1.8
5,145,252	-		GFF5152	0.73	+0.5
5,145,252	-		GFF5152	0.73	+1.0
5,145,252	-		GFF5152	0.73	-1.2
5,145,252	-		GFF5152	0.73	-0.5
5,145,252	-		GFF5152	0.73	-1.0
5,145,252	-		GFF5152	0.73	-0.1
5,145,252	-		GFF5152	0.73	-0.5
5,145,252	-		GFF5152	0.73	-0.0
5,145,254	+		GFF5152	0.73	-1.2
5,145,257	-		GFF5152	0.74	+0.8
5,145,268	+		GFF5152	0.77	+0.7
5,145,282	+		GFF5152	0.81	-1.3
5,145,308	-		GFF5152	0.88	-0.8
5,145,321	+				-0.8
5,145,325	+				-1.6
5,145,332	+				-1.4
5,145,344	+				-0.7
5,145,352	-				-1.8
5,145,352	-				-0.6
5,145,369	-				+0.2
5,145,371	+				-1.2
5,145,371	-				-0.7
5,145,379	-				-0.3
5,145,379	-				+0.1
5,145,379	-				-0.9
5,145,402	-				-0.9
5,145,403	+				-2.4
5,145,408	+				+0.2
5,145,421	+				+0.4
5,145,421	+				-0.8
5,145,426	+				-0.1
5,145,426	+				-2.3
5,145,426	+				-0.2
5,145,440	+				+0.1
5,145,442	+				-0.8
5,145,447	+				-0.4
5,145,448	-				-0.6
5,145,448	-				-0.6
5,145,468	+				-1.1
5,145,470	-				+0.7
5,145,470	-				+0.1
5,145,472	+				-1.3
5,145,488	+				-0.7
5,145,603	-		GFF5153	0.26	-2.0
5,145,620	-		GFF5153	0.29	-0.8
5,145,999	+				-0.5
5,146,014	+				+0.4
5,146,024	+				+0.1
5,146,035	+				-0.2
5,146,035	+				-1.5
5,146,035	+				-1.2
5,146,035	+				-1.6
5,146,035	+				-1.0
5,146,035	+				+0.5
5,146,041	-				+1.3
5,146,043	-				-1.0
5,146,043	-				+0.4
5,146,043	-				-0.4
5,146,043	-				+0.7
5,146,043	-				+0.6
5,146,043	-				+0.0
5,146,043	-				+0.3
5,146,043	-				-0.1
5,146,043	-				-1.6
5,146,043	-				+0.2
5,146,066	-				-2.3
5,146,072	+				+0.7
5,146,080	-				+0.1
5,146,109	-				-1.4
5,146,129	+				-0.6
5,146,155	+				+1.0
5,146,155	+				+0.4
5,146,155	+				-0.8
5,146,157	+				+1.1
5,146,160	+				+0.5
5,146,160	+				-2.0
5,146,160	+				-1.3
5,146,165	+				-0.7
5,146,172	+				-2.4
5,146,183	+				-0.6
5,146,183	+				+0.2
5,146,191	-				+0.4
5,146,217	+		GFF5154	0.12	-1.2
5,146,229	+		GFF5154	0.13	-0.2
5,146,240	+		GFF5154	0.14	-1.4
5,146,248	-		GFF5154	0.15	+0.3
5,146,254	-		GFF5154	0.15	-1.3
5,146,254	-		GFF5154	0.15	+1.3
5,146,254	-		GFF5154	0.15	-0.5
5,146,254	-		GFF5154	0.15	+1.3
5,146,254	-		GFF5154	0.15	+0.2
5,146,274	-		GFF5154	0.17	-0.4
5,146,295	-		GFF5154	0.19	-2.0
5,146,300	-		GFF5154	0.20	+0.2
5,146,311	-		GFF5154	0.21	-0.3
5,146,319	+		GFF5154	0.22	+1.3
5,146,325	-		GFF5154	0.22	-2.1
5,146,326	+		GFF5154	0.22	-2.3
5,146,326	-		GFF5154	0.22	-0.7
5,146,326	-		GFF5154	0.22	+0.6
5,146,327	-		GFF5154	0.22	-1.6
5,146,334	-		GFF5154	0.23	-1.5
5,146,344	+		GFF5154	0.24	-0.1
5,146,344	+		GFF5154	0.24	+0.3
5,146,344	+		GFF5154	0.24	-2.2
5,146,344	+		GFF5154	0.24	+0.2
5,146,344	+		GFF5154	0.24	-0.8
5,146,345	-		GFF5154	0.24	+0.7
5,146,349	+		GFF5154	0.25	-1.1
5,146,349	+		GFF5154	0.25	+1.3
5,146,349	+		GFF5154	0.25	+1.4
5,146,352	-		GFF5154	0.25	-0.9
5,146,352	-		GFF5154	0.25	-0.0
5,146,352	-		GFF5154	0.25	-0.1
5,146,352	-		GFF5154	0.25	+0.7
5,146,352	-		GFF5154	0.25	+0.0
5,146,352	-		GFF5154	0.25	+0.4
5,146,352	-		GFF5154	0.25	+0.4
5,146,352	-		GFF5154	0.25	-1.2