Strain Fitness in Sphingobium sp. HT1-2 around GFF5092

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,081,209	+		GFF5090	0.38	-1.9
5,081,214	+		GFF5090	0.39	-0.4
5,081,219	+		GFF5090	0.39	-1.2
5,081,249	+		GFF5090	0.43	-0.5
5,081,249	+		GFF5090	0.43	-1.0
5,081,249	+		GFF5090	0.43	-1.9
5,081,249	+		GFF5090	0.43	-1.3
5,081,249	+		GFF5090	0.43	-1.8
5,081,249	+		GFF5090	0.43	+0.2
5,081,249	+		GFF5090	0.43	-2.4
5,081,249	+		GFF5090	0.43	-0.2
5,081,249	+		GFF5090	0.43	-0.8
5,081,249	+		GFF5090	0.43	+0.1
5,081,249	+		GFF5090	0.43	-1.2
5,081,257	-		GFF5090	0.44	-0.7
5,081,257	-		GFF5090	0.44	+0.7
5,081,257	-		GFF5090	0.44	+1.3
5,081,257	-		GFF5090	0.44	-1.3
5,081,257	-		GFF5090	0.44	-2.6
5,081,291	-		GFF5090	0.49	-0.5
5,081,291	-		GFF5090	0.49	-0.7
5,081,296	-		GFF5090	0.50	-0.3
5,081,326	+		GFF5090	0.54	-1.1
5,081,326	+		GFF5090	0.54	+0.3
5,081,329	-		GFF5090	0.54	-1.3
5,081,329	-		GFF5090	0.54	-0.9
5,081,365	+		GFF5090	0.59	-0.7
5,081,373	-		GFF5090	0.60	+1.2
5,081,378	-		GFF5090	0.61	-1.7
5,081,383	-		GFF5090	0.61	-1.7
5,081,388	-		GFF5090	0.62	-1.1
5,081,388	-		GFF5090	0.62	-1.5
5,081,427	+		GFF5090	0.67	-0.8
5,081,435	-		GFF5090	0.68	-0.2
5,081,438	+		GFF5090	0.69	-0.9
5,081,438	+		GFF5090	0.69	-1.5
5,081,455	+		GFF5090	0.71	+0.9
5,081,468	-		GFF5090	0.73	-1.6
5,081,490	-		GFF5090	0.75	-3.1
5,081,490	-		GFF5090	0.75	-1.2
5,081,490	-		GFF5090	0.75	-0.6
5,081,491	-		GFF5090	0.76	-0.2
5,081,491	-		GFF5090	0.76	-1.5
5,081,491	-		GFF5090	0.76	+0.2
5,081,491	-		GFF5090	0.76	+0.9
5,081,497	-		GFF5090	0.76	-0.7
5,081,506	-		GFF5090	0.78	-0.9
5,081,514	-		GFF5090	0.79	+0.3
5,081,523	+		GFF5090	0.80	-1.2
5,081,523	+		GFF5090	0.80	-1.1
5,081,523	+		GFF5090	0.80	-1.9
5,081,523	+		GFF5090	0.80	-0.3
5,081,559	+		GFF5090	0.85	-0.9
5,081,567	-		GFF5090	0.86	-0.9
5,081,569	+		GFF5090	0.86	-1.1
5,081,577	-		GFF5090	0.87	-0.5
5,081,580	+		GFF5090	0.87	+0.3
5,081,580	+		GFF5090	0.87	-1.2
5,081,588	-		GFF5090	0.88	-1.5
5,081,598	-		GFF5090	0.90	-1.1
5,081,613	-				-1.9
5,081,633	+				-3.3
5,081,641	-				-0.3
5,081,641	-				-0.6
5,081,648	-				-0.1
5,081,689	+				-1.8
5,081,697	-				-0.6
5,081,697	-				+0.0
5,081,710	-				+0.5
5,081,710	-				-0.7
5,081,710	-				+0.1
5,081,718	-				-0.7
5,081,724	-		GFF5091	0.11	-0.1
5,081,785	-		GFF5091	0.23	+1.5
5,081,787	-		GFF5091	0.23	-0.4
5,081,816	-		GFF5091	0.29	+0.1
5,081,820	+		GFF5091	0.30	-0.1
5,081,832	+		GFF5091	0.32	-0.4
5,081,839	+		GFF5091	0.34	-1.8
5,081,839	+		GFF5091	0.34	-1.3
5,081,839	+		GFF5091	0.34	+1.3
5,081,839	+		GFF5091	0.34	-0.6
5,081,852	-		GFF5091	0.36	+0.2
5,081,899	+		GFF5091	0.46	-2.2
5,081,899	+		GFF5091	0.46	+0.3
5,081,899	+		GFF5091	0.46	-0.6
5,081,899	+		GFF5091	0.46	-2.9
5,081,899	+		GFF5091	0.46	-0.1
5,081,899	+		GFF5091	0.46	+1.1
5,081,904	+		GFF5091	0.47	-1.8
5,081,907	-		GFF5091	0.47	+1.1
5,081,907	-		GFF5091	0.47	-2.1
5,081,907	-		GFF5091	0.47	+0.0
5,081,922	-		GFF5091	0.50	-0.3
5,081,930	-		GFF5091	0.52	-0.4
5,081,940	+		GFF5091	0.54	-0.5
5,081,942	+		GFF5091	0.54	+0.1
5,081,956	+		GFF5091	0.57	-0.1
5,081,956	+		GFF5091	0.57	-3.1
5,081,956	+		GFF5091	0.57	+0.1
5,081,956	+		GFF5091	0.57	-0.4
5,081,956	+		GFF5091	0.57	-0.8
5,081,964	-		GFF5091	0.58	-0.3
5,081,964	-		GFF5091	0.58	-0.9
5,081,964	-		GFF5091	0.58	-1.2
5,081,964	-		GFF5091	0.58	-0.5
5,081,964	-		GFF5091	0.58	-0.0
5,081,964	-		GFF5091	0.58	-1.4
5,081,964	-		GFF5091	0.58	+0.3
5,081,969	-		GFF5091	0.59	-1.7
5,081,976	+		GFF5091	0.61	-0.7
5,081,977	+		GFF5091	0.61	+0.5
5,081,977	+		GFF5091	0.61	+0.4
5,081,977	+		GFF5091	0.61	-2.3
5,081,985	-		GFF5091	0.63	+0.7
5,081,985	-		GFF5091	0.63	+0.3
5,081,985	-		GFF5091	0.63	-0.6
5,081,999	-		GFF5091	0.65	-0.7
5,082,004	-		GFF5091	0.66	-0.1
5,082,031	+		GFF5091	0.72	+0.8
5,082,031	+		GFF5091	0.72	-2.5
5,082,031	+		GFF5091	0.72	-0.2
5,082,031	+		GFF5091	0.72	+1.2
5,082,031	+		GFF5091	0.72	-0.1
5,082,031	+		GFF5091	0.72	+0.5
5,082,031	+		GFF5091	0.72	-0.1
5,082,031	+		GFF5091	0.72	-1.5
5,082,031	+		GFF5091	0.72	-0.4
5,082,031	+		GFF5091	0.72	-0.2
5,082,031	+		GFF5091	0.72	+0.3
5,082,031	+		GFF5091	0.72	+0.3
5,082,036	+		GFF5091	0.73	-0.1
5,082,074	-		GFF5091	0.80	-1.0
5,082,079	-		GFF5091	0.81	-2.6
5,082,079	-		GFF5091	0.81	-0.5
5,082,084	-		GFF5091	0.82	-0.2
5,082,085	-		GFF5091	0.83	+0.6
5,082,127	-				-2.2
5,082,176	+				-2.5
5,082,201	-		GFF5092	0.11	-1.0
5,082,201	-		GFF5092	0.11	+0.4
5,082,201	-		GFF5092	0.11	-1.2
5,082,212	-		GFF5092	0.18	-1.3
5,082,264	+		GFF5092	0.51	-0.6
5,082,283	+		GFF5092	0.63	+0.1
5,082,283	+		GFF5092	0.63	-0.2
5,082,284	+		GFF5092	0.64	+0.0
5,082,291	-		GFF5092	0.68	-0.2
5,082,291	-		GFF5092	0.68	-0.8
5,082,291	-		GFF5092	0.68	-2.0
5,082,295	+		GFF5092	0.70	-0.3
5,082,295	+		GFF5092	0.70	+0.1
5,082,295	+		GFF5092	0.70	-0.8
5,082,298	-		GFF5092	0.72	-1.6
5,082,300	+		GFF5092	0.74	+0.9
5,082,303	-		GFF5092	0.75	-0.2
5,082,305	+		GFF5092	0.77	-0.5
5,082,313	-		GFF5092	0.82	-0.6
5,082,320	+		GFF5092	0.86	-1.2
5,082,322	-		GFF5092	0.87	-0.3
5,082,322	-		GFF5092	0.87	+0.4
5,082,330	-				+0.3
5,082,360	-				+0.5
5,082,374	-				+0.6
5,082,376	+				-0.8
5,082,393	+		GFF5093	0.11	-0.8
5,082,394	-		GFF5093	0.12	-0.6
5,082,401	-		GFF5093	0.15	-1.4
5,082,417	+		GFF5093	0.23	-0.4
5,082,417	+		GFF5093	0.23	+1.0
5,082,417	+		GFF5093	0.23	-0.1
5,082,417	+		GFF5093	0.23	-2.1
5,082,417	+		GFF5093	0.23	-0.7
5,082,417	+		GFF5093	0.23	-0.9
5,082,417	+		GFF5093	0.23	-0.4
5,082,417	+		GFF5093	0.23	-0.2
5,082,417	+		GFF5093	0.23	-3.5
5,082,417	+		GFF5093	0.23	+0.2
5,082,417	+		GFF5093	0.23	+0.2
5,082,417	+		GFF5093	0.23	-0.4
5,082,420	-		GFF5093	0.25	-1.4
5,082,425	-		GFF5093	0.27	+1.3
5,082,425	-		GFF5093	0.27	-0.2
5,082,425	-		GFF5093	0.27	+0.8
5,082,425	-		GFF5093	0.27	+0.4
5,082,425	-		GFF5093	0.27	-1.9
5,082,425	-		GFF5093	0.27	+0.0
5,082,425	-		GFF5093	0.27	-1.0
5,082,425	-		GFF5093	0.27	-0.4
5,082,425	-		GFF5093	0.27	-0.3
5,082,425	-		GFF5093	0.27	-0.8
5,082,425	-		GFF5093	0.27	-0.8
5,082,425	-		GFF5093	0.27	-0.2
5,082,425	-		GFF5093	0.27	-0.1
5,082,425	-		GFF5093	0.27	-0.1
5,082,425	-		GFF5093	0.27	-3.5
5,082,425	-		GFF5093	0.27	-2.2
5,082,425	-		GFF5093	0.27	-0.7
5,082,425	-		GFF5093	0.27	-1.1
5,082,425	-		GFF5093	0.27	-0.5
5,082,425	-		GFF5093	0.27	+0.3
5,082,425	-		GFF5093	0.27	-0.3
5,082,425	-		GFF5093	0.27	+0.8
5,082,425	-		GFF5093	0.27	-0.2
5,082,425	-		GFF5093	0.27	-0.2
5,082,439	+		GFF5093	0.34	-0.5
5,082,457	+		GFF5093	0.43	+0.3
5,082,465	-		GFF5093	0.47	-0.4
5,082,476	+		GFF5093	0.52	-2.8
5,082,476	+		GFF5093	0.52	-1.2
5,082,476	+		GFF5093	0.52	-1.3
5,082,476	+		GFF5093	0.52	-1.1
5,082,484	-		GFF5093	0.56	+0.4
5,082,484	-		GFF5093	0.56	-1.0
5,082,484	-		GFF5093	0.56	-2.6
5,082,488	-		GFF5093	0.58	-1.4
5,082,509	-		GFF5093	0.68	-1.0
5,082,548	+		GFF5093	0.87	-2.2
5,082,548	+		GFF5093	0.87	-1.2
5,082,553	+				-0.1
5,082,568	+				+0.1
5,082,591	+				+0.4
5,082,599	-				-1.7
5,082,608	-				+1.0
5,082,616	-				+0.1
5,082,620	-				-2.8
5,082,622	+				+0.2
5,082,622	-				-1.0
5,082,645	-				-0.7
5,082,645	-				+0.2
5,082,654	-				-3.2
5,082,654	-				-2.0
5,082,654	-				-0.4
5,082,701	-		GFF5094	0.15	+0.2
5,082,701	-		GFF5094	0.15	-1.3
5,082,715	+		GFF5094	0.19	-0.1
5,082,715	+		GFF5094	0.19	-1.7
5,082,722	+		GFF5094	0.21	-2.6
5,082,722	+		GFF5094	0.21	-2.6
5,082,722	+		GFF5094	0.21	+0.2
5,082,722	+		GFF5094	0.21	-0.3
5,082,722	+		GFF5094	0.21	-0.8
5,082,722	+		GFF5094	0.21	-0.4
5,082,722	+		GFF5094	0.21	-1.7
5,082,722	+		GFF5094	0.21	-1.0
5,082,722	+		GFF5094	0.21	-0.8
5,082,722	+		GFF5094	0.21	-0.7
5,082,728	+		GFF5094	0.22	+0.9
5,082,730	-		GFF5094	0.23	-1.7
5,082,753	-		GFF5094	0.29	+0.9
5,082,771	+		GFF5094	0.34	-0.3
5,082,775	+		GFF5094	0.36	-0.4
5,082,779	-		GFF5094	0.37	+0.5
5,082,805	-		GFF5094	0.44	-0.5
5,082,812	+		GFF5094	0.46	-0.3
5,082,830	+		GFF5094	0.51	-0.7
5,082,830	+		GFF5094	0.51	+0.0
5,082,830	+		GFF5094	0.51	-0.5
5,082,830	+		GFF5094	0.51	+0.7
5,082,830	+		GFF5094	0.51	-0.8
5,082,830	+		GFF5094	0.51	+0.8
5,082,830	+		GFF5094	0.51	+1.5
5,082,830	+		GFF5094	0.51	-1.6
5,082,830	+		GFF5094	0.51	-0.6
5,082,830	+		GFF5094	0.51	+0.5
5,082,830	+		GFF5094	0.51	+0.5
5,082,830	+		GFF5094	0.51	-0.1
5,082,830	+		GFF5094	0.51	+0.2
5,082,830	+		GFF5094	0.51	-1.8
5,082,830	+		GFF5094	0.51	-0.1
5,082,830	+		GFF5094	0.51	-0.9
5,082,830	+		GFF5094	0.51	-0.8
5,082,830	+		GFF5094	0.51	-0.9
5,082,830	+		GFF5094	0.51	-1.1
5,082,830	+		GFF5094	0.51	-0.8
5,082,830	+		GFF5094	0.51	+0.5
5,082,830	+		GFF5094	0.51	-1.5
5,082,830	+		GFF5094	0.51	-1.5
5,082,830	+		GFF5094	0.51	-0.4
5,082,833	-		GFF5094	0.52	-1.6
5,082,838	-		GFF5094	0.53	-1.3
5,082,838	-		GFF5094	0.53	+0.5
5,082,838	-		GFF5094	0.53	+0.3
5,082,838	-		GFF5094	0.53	-0.3
5,082,838	-		GFF5094	0.53	-0.2
5,082,838	-		GFF5094	0.53	-0.8
5,082,838	-		GFF5094	0.53	-0.9
5,082,838	-		GFF5094	0.53	-2.4
5,082,838	-		GFF5094	0.53	+0.2
5,082,838	-		GFF5094	0.53	-1.2
5,082,838	-		GFF5094	0.53	+0.7
5,082,838	-		GFF5094	0.53	-0.4
5,082,891	+		GFF5094	0.68	-0.7
5,082,892	+		GFF5094	0.68	-0.4
5,082,897	+		GFF5094	0.70	-0.7
5,082,900	+		GFF5094	0.71	-0.5
5,082,901	+		GFF5094	0.71	-0.8
5,082,913	+		GFF5094	0.74	-1.1
5,082,920	+		GFF5094	0.76	-0.3
5,082,920	+		GFF5094	0.76	-2.1
5,082,928	-		GFF5094	0.78	-1.3
5,082,933	-		GFF5094	0.80	-1.6
5,082,954	+		GFF5094	0.86	-0.1
5,082,987	-				-2.7
5,082,997	-				-0.8
5,083,000	+				-0.8
5,083,008	+				-2.2
5,083,011	+				-0.1
5,083,016	+				-0.7
5,083,016	+				-1.2
5,083,024	-				-1.1
5,083,024	-				-0.7
5,083,053	+				-0.8
5,083,053	+				+0.3
5,083,053	+				+0.4
5,083,053	+				-1.6
5,083,061	-				-2.3
5,083,079	+		GFF5095	0.10	-0.6
5,083,079	+		GFF5095	0.10	+0.7
5,083,087	-		GFF5095	0.12	-0.3
5,083,087	-		GFF5095	0.12	-2.1
5,083,105	+		GFF5095	0.15	-1.5
5,083,105	+		GFF5095	0.15	-1.4
5,083,105	+		GFF5095	0.15	-0.5
5,083,113	-		GFF5095	0.17	-0.4
5,083,126	-		GFF5095	0.19	+0.0
5,083,132	-		GFF5095	0.20	-0.3
5,083,148	+		GFF5095	0.24	-0.9
5,083,156	-		GFF5095	0.25	-0.2
5,083,156	-		GFF5095	0.25	-1.8
5,083,161	+		GFF5095	0.26	-0.4
5,083,169	-		GFF5095	0.28	+0.2
5,083,169	-		GFF5095	0.28	-2.5
5,083,187	-		GFF5095	0.31	+0.0
5,083,194	+		GFF5095	0.33	-1.7
5,083,196	+		GFF5095	0.33	-0.8
5,083,202	-		GFF5095	0.34	-0.9
5,083,216	+		GFF5095	0.37	-0.3
5,083,218	-		GFF5095	0.37	-1.0
5,083,241	+		GFF5095	0.42	+0.0
5,083,246	+		GFF5095	0.43	-0.1
5,083,254	-		GFF5095	0.44	+0.0
5,083,254	-		GFF5095	0.44	-1.0
5,083,262	+		GFF5095	0.46	-0.7
5,083,269	-		GFF5095	0.47	-2.0
5,083,282	+		GFF5095	0.50	-1.8
5,083,289	+		GFF5095	0.51	-0.5
5,083,294	+		GFF5095	0.52	+0.4
5,083,299	+		GFF5095	0.53	+0.4
5,083,299	+		GFF5095	0.53	+0.9
5,083,302	+		GFF5095	0.54	-1.8
5,083,310	-		GFF5095	0.55	-0.9
5,083,312	+		GFF5095	0.56	-0.2
5,083,313	+		GFF5095	0.56	-0.2