Strain Fitness in Sphingobium sp. HT1-2 around GFF5079

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,072,087	-		GFF5078	0.15	-0.8
5,072,119	-		GFF5078	0.18	-1.8
5,072,120	-		GFF5078	0.18	-0.8
5,072,259	-		GFF5078	0.30	-1.6
5,072,261	+		GFF5078	0.31	-1.9
5,072,261	-		GFF5078	0.31	-2.0
5,072,453	-		GFF5078	0.47	-0.2
5,072,517	+		GFF5078	0.53	+0.5
5,072,582	-		GFF5078	0.59	-1.9
5,072,614	+		GFF5078	0.61	-0.9
5,072,703	-		GFF5078	0.69	-1.4
5,072,944	+				-0.8
5,072,972	-				-1.2
5,073,010	+				-0.7
5,073,040	+				+0.9
5,073,048	-				-2.3
5,073,074	-				-2.3
5,073,091	-				-2.3
5,073,117	+				-1.8
5,073,127	+				-2.6
5,073,135	-				-1.6
5,073,145	+				-1.4
5,073,158	-				-0.9
5,073,159	+				-1.9
5,073,160	+				-0.6
5,073,160	+				-0.1
5,073,160	+				-1.3
5,073,168	-				-1.2
5,073,168	-				-0.2
5,073,168	-				-0.5
5,073,168	-				+0.0
5,073,170	+				-2.5
5,073,173	-				-0.6
5,073,177	-				-1.9
5,073,179	-				-1.0
5,073,188	+				-0.1
5,073,188	+				+0.3
5,073,196	-				-2.9
5,073,254	+		GFF5079	0.14	-2.4
5,073,254	+		GFF5079	0.14	-2.6
5,073,255	-		GFF5079	0.14	-2.7
5,073,262	-		GFF5079	0.15	-0.8
5,073,269	+		GFF5079	0.16	-2.0
5,073,319	+		GFF5079	0.20	-0.3
5,073,371	+		GFF5079	0.24	+0.2
5,073,389	+		GFF5079	0.26	-2.0
5,073,396	-		GFF5079	0.26	-1.3
5,073,419	+		GFF5079	0.28	-1.6
5,073,427	-		GFF5079	0.29	+0.3
5,073,427	-		GFF5079	0.29	-1.0
5,073,427	-		GFF5079	0.29	-2.3
5,073,427	-		GFF5079	0.29	+0.2
5,073,445	+		GFF5079	0.31	-0.4
5,073,446	-		GFF5079	0.31	-0.8
5,073,480	+		GFF5079	0.34	+0.5
5,073,480	+		GFF5079	0.34	+0.7
5,073,481	-		GFF5079	0.34	+0.1
5,073,488	+		GFF5079	0.34	-1.1
5,073,488	-		GFF5079	0.34	+0.7
5,073,490	+		GFF5079	0.34	-1.3
5,073,490	+		GFF5079	0.34	-2.8
5,073,490	+		GFF5079	0.34	+0.4
5,073,498	-		GFF5079	0.35	-2.1
5,073,498	-		GFF5079	0.35	-0.6
5,073,498	-		GFF5079	0.35	-1.0
5,073,498	-		GFF5079	0.35	-1.1
5,073,498	-		GFF5079	0.35	-0.8
5,073,503	+		GFF5079	0.35	-2.1
5,073,511	-		GFF5079	0.36	-1.1
5,073,521	+		GFF5079	0.37	-2.5
5,073,521	+		GFF5079	0.37	-1.6
5,073,529	-		GFF5079	0.38	-1.1
5,073,577	+		GFF5079	0.42	-0.8
5,073,580	-		GFF5079	0.42	-3.0
5,073,595	+		GFF5079	0.43	-2.1
5,073,598	-		GFF5079	0.44	-1.9
5,073,608	-		GFF5079	0.44	-2.0
5,073,640	-		GFF5079	0.47	-1.5
5,073,645	+		GFF5079	0.48	-1.4
5,073,653	-		GFF5079	0.48	-2.1
5,073,686	-		GFF5079	0.51	-1.9
5,073,688	-		GFF5079	0.51	-1.6
5,073,731	+		GFF5079	0.55	-2.6
5,073,771	+		GFF5079	0.58	-2.2
5,073,771	+		GFF5079	0.58	-0.3
5,073,777	-		GFF5079	0.59	-2.1
5,073,779	-		GFF5079	0.59	-1.9
5,073,779	-		GFF5079	0.59	+0.1
5,073,779	-		GFF5079	0.59	-2.2
5,073,785	-		GFF5079	0.59	-2.6
5,073,809	+		GFF5079	0.61	-2.7
5,073,817	-		GFF5079	0.62	-1.4
5,073,848	+		GFF5079	0.65	-2.3
5,073,853	+		GFF5079	0.65	-0.3
5,073,856	-		GFF5079	0.65	-2.3
5,073,856	-		GFF5079	0.65	-1.0
5,073,856	-		GFF5079	0.65	-0.7
5,073,856	-		GFF5079	0.65	-1.9
5,073,856	-		GFF5079	0.65	-1.8
5,073,856	-		GFF5079	0.65	-1.8
5,073,856	-		GFF5079	0.65	+1.4
5,073,856	-		GFF5079	0.65	-1.9
5,073,858	+		GFF5079	0.66	-0.1
5,073,858	+		GFF5079	0.66	-0.4
5,073,860	+		GFF5079	0.66	+0.1
5,073,861	-		GFF5079	0.66	-0.2
5,073,861	-		GFF5079	0.66	-0.2
5,073,863	+		GFF5079	0.66	-1.7
5,073,865	+		GFF5079	0.66	+0.0
5,073,866	-		GFF5079	0.66	-0.4
5,073,866	-		GFF5079	0.66	-1.8
5,073,866	-		GFF5079	0.66	-0.5
5,073,866	-		GFF5079	0.66	-1.1
5,073,866	-		GFF5079	0.66	-2.5
5,073,866	-		GFF5079	0.66	-1.8
5,073,866	-		GFF5079	0.66	-0.6
5,073,871	-		GFF5079	0.67	+1.0
5,073,873	-		GFF5079	0.67	-0.3
5,073,879	+		GFF5079	0.67	-1.1
5,073,883	-		GFF5079	0.68	+0.8
5,073,887	-		GFF5079	0.68	+0.7
5,073,887	-		GFF5079	0.68	-0.1
5,073,909	+		GFF5079	0.70	+0.1
5,073,927	-		GFF5079	0.72	-1.0
5,073,937	-		GFF5079	0.72	-1.3
5,073,937	-		GFF5079	0.72	-0.4
5,073,951	-		GFF5079	0.74	-0.6
5,073,951	-		GFF5079	0.74	+0.6
5,074,040	+		GFF5079	0.81	+1.1
5,074,073	-		GFF5079	0.84	-0.1
5,074,187	+				-1.2
5,074,211	-				-1.1
5,074,244	-				+1.2
5,074,272	+				-0.1
5,074,273	+				-0.9
5,074,280	-				+0.4
5,074,280	-				-1.5
5,074,280	-				-1.5
5,074,290	-				+1.1
5,074,292	+				+0.1
5,074,292	+				-0.3
5,074,300	-				+0.5
5,074,300	-				-0.8
5,074,301	+				-1.9
5,074,301	+				-0.9
5,074,301	+				-1.0
5,074,304	-				-0.4
5,074,309	-				-0.4
5,074,309	-				-0.3
5,074,309	-				-0.4
5,074,309	-				-0.1
5,074,314	-				-0.9
5,074,316	+				-1.4
5,074,316	+				-1.1
5,074,324	-		GFF5080	0.10	-1.6
5,074,324	-		GFF5080	0.10	-0.3
5,074,355	+		GFF5080	0.15	-0.2
5,074,374	+		GFF5080	0.19	+0.4
5,074,374	+		GFF5080	0.19	-1.6
5,074,374	+		GFF5080	0.19	-0.6
5,074,382	-		GFF5080	0.20	-0.5
5,074,418	+		GFF5080	0.26	-0.1
5,074,418	+		GFF5080	0.26	+0.4
5,074,418	+		GFF5080	0.26	-1.5
5,074,418	+		GFF5080	0.26	-0.2
5,074,418	+		GFF5080	0.26	-0.1
5,074,418	+		GFF5080	0.26	-2.2
5,074,418	+		GFF5080	0.26	-1.4
5,074,420	-		GFF5080	0.26	-0.9
5,074,420	-		GFF5080	0.26	+1.2
5,074,423	+		GFF5080	0.27	-1.7
5,074,423	+		GFF5080	0.27	-1.8
5,074,423	+		GFF5080	0.27	-1.8
5,074,426	-		GFF5080	0.27	-0.6
5,074,426	-		GFF5080	0.27	+0.3
5,074,426	-		GFF5080	0.27	+0.2
5,074,426	-		GFF5080	0.27	-0.3
5,074,426	-		GFF5080	0.27	-1.8
5,074,431	-		GFF5080	0.28	-0.4
5,074,482	-		GFF5080	0.37	-0.6
5,074,486	-		GFF5080	0.37	-1.7
5,074,486	-		GFF5080	0.37	-0.7
5,074,486	-		GFF5080	0.37	-1.9
5,074,493	+		GFF5080	0.39	-0.6
5,074,493	+		GFF5080	0.39	-1.5
5,074,493	+		GFF5080	0.39	-2.6
5,074,493	+		GFF5080	0.39	-0.6
5,074,493	+		GFF5080	0.39	+0.4
5,074,493	+		GFF5080	0.39	-0.9
5,074,493	+		GFF5080	0.39	-0.8
5,074,501	-		GFF5080	0.40	-0.2
5,074,501	-		GFF5080	0.40	-0.1
5,074,501	-		GFF5080	0.40	-0.1
5,074,501	-		GFF5080	0.40	-3.1
5,074,501	-		GFF5080	0.40	-1.9
5,074,516	-		GFF5080	0.42	-1.6
5,074,516	-		GFF5080	0.42	-2.3
5,074,518	+		GFF5080	0.43	-1.3
5,074,542	+		GFF5080	0.47	-2.7
5,074,552	-		GFF5080	0.48	-0.6
5,074,584	+		GFF5080	0.54	+0.3
5,074,606	+		GFF5080	0.58	-0.7
5,074,606	+		GFF5080	0.58	+0.0
5,074,646	-		GFF5080	0.64	-0.7
5,074,647	+		GFF5080	0.64	-0.6
5,075,009	+				-1.9
5,075,009	-				-0.2
5,075,017	-				-1.1
5,075,017	-				-1.9
5,075,017	-				-1.7
5,075,019	-				-1.1
5,075,021	+				-1.6
5,075,021	+				+0.4
5,075,023	+				-0.3
5,075,023	+				+0.6
5,075,029	+				+0.3
5,075,029	-				-1.4
5,075,029	-				-0.4
5,075,031	-				-0.9
5,075,039	+				-1.9
5,075,040	+				+0.6
5,075,042	+				-2.0
5,075,047	+				-0.3
5,075,052	+				-0.1
5,075,055	-				-0.5
5,075,063	-				-1.8
5,075,087	-				+1.3
5,075,095	+				-3.5
5,075,103	-				+0.1
5,075,103	-				+0.5
5,075,109	+				-2.4
5,075,118	-				+0.9
5,075,146	+				-0.1
5,075,147	+				-1.7
5,075,180	-				-1.6
5,075,190	+				-2.4
5,075,193	-				-0.6
5,075,198	-				-2.4
5,075,240	+				-0.8
5,075,254	+				-2.1
5,075,254	+				-1.2
5,075,254	+				-1.2
5,075,254	+				+0.5
5,075,254	+				-0.4
5,075,254	+				-0.1
5,075,257	-				-1.1