Strain Fitness in Sphingobium sp. HT1-2 around GFF5023

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,013,718	+		GFF5020	0.56	-1.7
5,013,725	-		GFF5020	0.59	+0.1
5,013,725	-		GFF5020	0.59	+1.7
5,013,725	-		GFF5020	0.59	-1.1
5,013,725	-		GFF5020	0.59	+0.4
5,013,749	-		GFF5020	0.67	-0.8
5,013,763	+		GFF5020	0.73	+1.8
5,013,766	-		GFF5020	0.74	-0.3
5,013,802	+		GFF5020	0.87	+1.7
5,013,815	+				+1.3
5,013,831	+				+1.8
5,013,834	-				+0.2
5,013,860	-		GFF5021	0.11	+1.6
5,013,861	+		GFF5021	0.12	-1.5
5,013,863	-		GFF5021	0.13	-0.1
5,013,869	-		GFF5021	0.15	-1.6
5,013,889	-		GFF5021	0.24	+0.0
5,013,898	-		GFF5021	0.27	-1.2
5,013,907	-		GFF5021	0.31	-0.8
5,013,926	-		GFF5021	0.39	-0.7
5,013,937	+		GFF5021	0.44	+1.2
5,013,937	+		GFF5021	0.44	+0.4
5,013,937	+		GFF5021	0.44	+1.5
5,013,937	+		GFF5021	0.44	+1.1
5,013,937	+		GFF5021	0.44	+0.4
5,013,940	-		GFF5021	0.45	+0.9
5,013,945	-		GFF5021	0.47	+1.1
5,013,945	-		GFF5021	0.47	+1.2
5,013,945	-		GFF5021	0.47	+0.4
5,014,003	-		GFF5021	0.72	-0.4
5,014,029	+		GFF5021	0.83	-1.4
5,014,030	+		GFF5021	0.83	-0.4
5,014,039	+		GFF5021	0.87	-0.1
5,014,039	+		GFF5021	0.87	-1.5
5,014,039	+		GFF5021	0.87	-1.3
5,014,039	-		GFF5021	0.87	+0.6
5,014,047	-				+0.1
5,014,047	-				+0.5
5,014,071	+				+0.5
5,014,214	-				-0.0
5,014,274	+				-0.2
5,014,287	-				+0.3
5,014,354	-				+0.4
5,014,356	+				+0.7
5,014,361	-				+0.4
5,014,364	-				-0.2
5,014,371	-				-0.1
5,014,374	-		GFF5022	0.10	-1.5
5,014,419	+		GFF5022	0.25	-1.1
5,014,419	+		GFF5022	0.25	+0.1
5,014,419	-		GFF5022	0.25	+0.0
5,014,419	-		GFF5022	0.25	-0.5
5,014,452	+		GFF5022	0.35	-1.2
5,014,471	+		GFF5022	0.41	+0.0
5,014,476	+		GFF5022	0.43	+0.3
5,014,476	+		GFF5022	0.43	+0.1
5,014,476	+		GFF5022	0.43	+0.3
5,014,479	-		GFF5022	0.44	-1.7
5,014,484	-		GFF5022	0.45	+1.2
5,014,609	+		GFF5022	0.85	+0.6
5,014,609	+		GFF5022	0.85	+0.4
5,014,617	-		GFF5022	0.88	-0.6
5,014,625	+				-0.0
5,014,630	+				-0.5
5,014,633	-				+0.3
5,014,633	-				-0.3
5,014,633	-				+0.8
5,014,633	-				+0.7
5,014,635	+				+0.5
5,014,636	+				-1.9
5,014,669	+				+1.2
5,014,669	+				+0.2
5,014,669	+				+0.7
5,014,670	+				+0.5
5,014,670	+				-0.1
5,014,677	-				+0.1
5,014,747	+				-0.4
5,014,759	-				+1.6
5,014,764	-				-1.9
5,014,766	-				+1.0
5,014,769	-				+1.2
5,014,774	+				-0.6
5,014,779	+				+0.4
5,014,779	+				+1.1
5,014,779	+				-0.2
5,014,779	+				-0.2
5,014,782	-				-1.5
5,014,787	+				-0.8
5,014,787	-				+0.1
5,014,789	+				+0.4
5,014,792	-				-0.3
5,014,795	-				-1.8
5,014,795	-				-2.0
5,014,797	-				-0.5
5,014,813	-				+0.1
5,014,857	-				+0.4
5,014,859	-				+0.8
5,014,876	-		GFF5023	0.10	+1.0
5,014,881	-		GFF5023	0.10	-1.1
5,014,932	+		GFF5023	0.14	+0.9
5,014,932	+		GFF5023	0.14	+0.1
5,014,932	+		GFF5023	0.14	-2.1
5,014,932	+		GFF5023	0.14	+1.0
5,014,934	-		GFF5023	0.14	-0.5
5,014,951	-		GFF5023	0.15	-0.2
5,014,971	-		GFF5023	0.16	+0.4
5,014,976	+		GFF5023	0.16	+0.8
5,014,976	+		GFF5023	0.16	+1.2
5,014,978	+		GFF5023	0.16	+0.3
5,014,978	+		GFF5023	0.16	+0.0
5,014,984	-		GFF5023	0.17	+0.5
5,014,984	-		GFF5023	0.17	+1.1
5,014,990	+		GFF5023	0.17	+0.8
5,014,993	-		GFF5023	0.17	+0.0
5,015,017	+		GFF5023	0.19	+1.7
5,015,018	+		GFF5023	0.19	-0.3
5,015,025	-		GFF5023	0.19	-2.6
5,015,037	-		GFF5023	0.20	+0.9
5,015,047	-		GFF5023	0.21	-0.4
5,015,055	+		GFF5023	0.21	+0.8
5,015,100	+		GFF5023	0.24	-1.6
5,015,100	+		GFF5023	0.24	+0.8
5,015,108	-		GFF5023	0.24	+1.6
5,015,129	-		GFF5023	0.26	-0.1
5,015,148	+		GFF5023	0.27	-0.7
5,015,156	-		GFF5023	0.27	-0.3
5,015,175	+		GFF5023	0.29	-1.8
5,015,222	-		GFF5023	0.31	-1.8
5,015,227	+		GFF5023	0.32	+0.2
5,015,227	+		GFF5023	0.32	+0.1
5,015,248	+		GFF5023	0.33	-1.6
5,015,248	+		GFF5023	0.33	+0.5
5,015,248	+		GFF5023	0.33	+0.6
5,015,248	+		GFF5023	0.33	+0.6
5,015,256	-		GFF5023	0.34	+0.2
5,015,256	-		GFF5023	0.34	+0.5
5,015,273	+		GFF5023	0.35	-0.1
5,015,275	+		GFF5023	0.35	+0.8
5,015,276	-		GFF5023	0.35	+0.3
5,015,284	-		GFF5023	0.35	-0.0
5,015,300	-		GFF5023	0.36	+0.4
5,015,301	+		GFF5023	0.36	+0.8
5,015,340	+		GFF5023	0.39	-0.3
5,015,340	+		GFF5023	0.39	-1.5
5,015,340	+		GFF5023	0.39	-2.5
5,015,340	+		GFF5023	0.39	+0.1
5,015,340	+		GFF5023	0.39	+0.4
5,015,348	-		GFF5023	0.39	-0.2
5,015,348	-		GFF5023	0.39	+0.5
5,015,348	-		GFF5023	0.39	+0.3
5,015,438	-		GFF5023	0.45	+0.3
5,015,438	-		GFF5023	0.45	-0.3
5,015,456	+		GFF5023	0.46	-1.1
5,015,457	-		GFF5023	0.46	-1.2
5,015,462	-		GFF5023	0.46	-0.3
5,015,462	-		GFF5023	0.46	-0.6
5,015,469	+		GFF5023	0.47	+0.5
5,015,469	-		GFF5023	0.47	+1.7
5,015,470	+		GFF5023	0.47	+0.8
5,015,477	-		GFF5023	0.47	-0.5
5,015,477	-		GFF5023	0.47	+0.7
5,015,526	-		GFF5023	0.50	+1.3
5,015,527	-		GFF5023	0.50	+1.3
5,015,527	-		GFF5023	0.50	-0.0
5,015,534	-		GFF5023	0.51	+1.3
5,015,549	+		GFF5023	0.52	-0.7
5,015,575	+		GFF5023	0.53	-0.0
5,015,575	+		GFF5023	0.53	-2.3
5,015,575	-		GFF5023	0.53	-0.7
5,015,583	-		GFF5023	0.54	+0.2
5,015,583	-		GFF5023	0.54	-0.4
5,015,604	-		GFF5023	0.55	-1.7
5,015,622	+		GFF5023	0.56	-1.4
5,015,622	+		GFF5023	0.56	+1.3
5,015,657	-		GFF5023	0.58	-0.6
5,015,658	+		GFF5023	0.58	-0.5
5,015,661	+		GFF5023	0.58	-0.4
5,015,664	-		GFF5023	0.59	-1.7
5,015,664	-		GFF5023	0.59	-0.5
5,015,691	+		GFF5023	0.60	-0.1
5,015,699	-		GFF5023	0.61	-1.5
5,015,699	-		GFF5023	0.61	-0.1
5,015,699	-		GFF5023	0.61	-0.7
5,015,700	-		GFF5023	0.61	-0.3
5,015,700	-		GFF5023	0.61	+0.5
5,015,749	+		GFF5023	0.64	+0.4
5,015,749	+		GFF5023	0.64	+0.2
5,015,749	+		GFF5023	0.64	-2.0
5,015,749	+		GFF5023	0.64	-0.0
5,015,754	+		GFF5023	0.64	+0.3
5,015,754	+		GFF5023	0.64	+0.3
5,015,754	+		GFF5023	0.64	+0.2
5,015,754	+		GFF5023	0.64	+0.1
5,015,754	+		GFF5023	0.64	-2.5
5,015,754	+		GFF5023	0.64	+0.3
5,015,757	-		GFF5023	0.64	+0.8
5,015,757	-		GFF5023	0.64	-0.7
5,015,761	-		GFF5023	0.65	+0.0
5,015,762	-		GFF5023	0.65	+0.2
5,015,762	-		GFF5023	0.65	-0.0
5,015,762	-		GFF5023	0.65	-1.0
5,015,793	-		GFF5023	0.67	-0.7
5,015,803	+		GFF5023	0.67	-1.0
5,015,803	+		GFF5023	0.67	+0.6
5,015,834	+		GFF5023	0.69	+0.4
5,015,834	+		GFF5023	0.69	-0.0
5,015,834	+		GFF5023	0.69	-0.2
5,015,834	+		GFF5023	0.69	+1.0
5,015,834	+		GFF5023	0.69	-1.1
5,015,834	+		GFF5023	0.69	-0.4
5,015,834	+		GFF5023	0.69	-0.5
5,015,834	+		GFF5023	0.69	-0.7
5,015,834	+		GFF5023	0.69	-1.2
5,015,834	+		GFF5023	0.69	+0.8
5,015,834	+		GFF5023	0.69	+0.7
5,015,834	+		GFF5023	0.69	+1.2
5,015,834	+		GFF5023	0.69	-0.1
5,015,834	+		GFF5023	0.69	-0.2
5,015,834	+		GFF5023	0.69	+0.5
5,015,834	+		GFF5023	0.69	-0.3
5,015,834	+		GFF5023	0.69	+0.0
5,015,834	+		GFF5023	0.69	+0.7
5,015,834	+		GFF5023	0.69	-0.2
5,015,834	+		GFF5023	0.69	+0.9
5,015,834	+		GFF5023	0.69	-0.8
5,015,839	+		GFF5023	0.69	+0.2
5,015,839	+		GFF5023	0.69	-0.3
5,015,839	+		GFF5023	0.69	+0.2
5,015,842	-		GFF5023	0.70	-0.1
5,015,842	-		GFF5023	0.70	-0.4
5,015,842	-		GFF5023	0.70	+0.8
5,015,842	-		GFF5023	0.70	-0.5
5,015,842	-		GFF5023	0.70	-0.2
5,015,842	-		GFF5023	0.70	+1.0
5,015,842	-		GFF5023	0.70	-1.1
5,015,842	-		GFF5023	0.70	+0.0
5,015,842	-		GFF5023	0.70	-2.0
5,015,842	-		GFF5023	0.70	-0.1
5,015,842	-		GFF5023	0.70	-0.2
5,015,842	-		GFF5023	0.70	+0.2
5,015,842	-		GFF5023	0.70	-2.5
5,015,842	-		GFF5023	0.70	-0.9
5,015,842	-		GFF5023	0.70	-1.4
5,015,842	-		GFF5023	0.70	+0.3
5,015,844	+		GFF5023	0.70	+0.2
5,015,847	-		GFF5023	0.70	+0.1
5,015,868	+		GFF5023	0.71	-0.1
5,015,880	+		GFF5023	0.72	-0.0
5,015,916	-		GFF5023	0.74	+0.8
5,015,916	-		GFF5023	0.74	+0.7
5,015,916	-		GFF5023	0.74	-0.8
5,015,957	+		GFF5023	0.77	+1.8
5,015,970	-		GFF5023	0.77	+0.2
5,015,970	-		GFF5023	0.77	-0.8
5,015,970	-		GFF5023	0.77	-1.6
5,015,975	+		GFF5023	0.78	+0.7
5,015,983	-		GFF5023	0.78	+0.9
5,015,994	+		GFF5023	0.79	-1.5
5,015,994	+		GFF5023	0.79	-0.5
5,016,031	+		GFF5023	0.81	-1.6
5,016,049	-		GFF5023	0.82	-1.6
5,016,059	-		GFF5023	0.83	+0.1
5,016,064	+		GFF5023	0.83	-0.4
5,016,069	-		GFF5023	0.84	-1.8
5,016,085	+		GFF5023	0.85	-0.3
5,016,099	-		GFF5023	0.85	+0.3
5,016,115	+		GFF5023	0.86	+0.5
5,016,115	+		GFF5023	0.86	+0.8
5,016,123	-		GFF5023	0.87	+0.6
5,016,123	-		GFF5023	0.87	+0.2
5,016,150	-		GFF5023	0.88	+1.7
5,016,167	+		GFF5023	0.90	-0.7
5,016,167	+		GFF5023	0.90	-0.8
5,016,175	-				+0.1
5,016,177	+				-0.4
5,016,182	+				+0.1
5,016,205	+				+0.6
5,016,210	+				+1.1
5,016,210	+				+1.1
5,016,255	+				-1.5
5,016,263	-				-0.9
5,016,275	+				+0.5
5,016,277	+				-0.4
5,016,283	+				+0.1
5,016,285	+				+0.0
5,016,292	+				+1.2
5,016,292	+				+1.3
5,016,293	-				+1.7
5,016,300	-				+0.7
5,016,302	-				-0.0
5,016,309	-				+0.6
5,016,345	+				-0.2
5,016,345	+				+0.6
5,016,353	-				+0.5
5,016,375	+				-1.0
5,016,377	+				+0.1
5,016,406	+				+1.1
5,016,459	+		GFF5024	0.35	-0.7
5,016,461	+		GFF5024	0.37	-1.8
5,016,461	+		GFF5024	0.37	-0.6
5,016,467	-		GFF5024	0.40	+0.4
5,016,467	-		GFF5024	0.40	-0.5
5,016,516	-		GFF5024	0.66	+0.8
5,016,521	+		GFF5024	0.69	+1.5
5,016,522	-		GFF5024	0.69	+0.4
5,016,527	+		GFF5024	0.72	-0.4
5,016,535	-		GFF5024	0.76	+0.6
5,016,535	-		GFF5024	0.76	+0.1
5,016,549	+		GFF5024	0.84	+0.2
5,016,552	-		GFF5024	0.85	-1.0
5,016,552	-		GFF5024	0.85	+1.1
5,016,553	+		GFF5024	0.86	-0.2
5,016,553	+		GFF5024	0.86	-0.3
5,016,557	-		GFF5024	0.88	-0.1
5,016,566	-				+1.2
5,016,581	-				+0.4
5,016,654	+				-2.0
5,016,659	+				+0.4
5,016,662	-				+0.1
5,016,664	+				+0.7
5,016,667	-				-0.1
5,016,667	-				-1.5
5,016,669	+				-1.6
5,016,686	+				+0.5
5,016,686	+				-0.1
5,016,694	-				+1.7
5,016,694	-				+0.1
5,016,703	+				+0.8
5,016,708	+				-2.1
5,016,716	-				-0.6
5,016,716	-				+0.0
5,016,719	+				-2.5
5,016,721	-				+0.9
5,016,726	-				+1.8
5,016,772	+				-1.8
5,016,772	+				+0.2
5,016,772	+				-0.5
5,016,780	-				+1.3
5,016,831	-				+0.8
5,016,845	+				-0.4
5,016,845	+				-0.5
5,016,853	-				-0.6
5,016,853	-				-0.7
5,016,888	+				+0.4
5,016,888	+				+1.3
5,016,888	+				-2.0
5,016,896	-				+0.9
5,016,904	-				+0.7
5,016,923	+				+0.7
5,016,923	+				-0.5
5,016,947	+				+0.5
5,016,953	+				+0.8
5,016,953	-				-0.3
5,016,955	-				-0.2
5,016,963	+				-0.5
5,016,963	+				+0.2
5,016,966	-				-1.7
5,016,966	-				+0.8
5,016,971	-		GFF5025	0.11	-0.8
5,016,971	-		GFF5025	0.11	+1.9
5,016,971	-		GFF5025	0.11	-0.1
5,017,000	-		GFF5025	0.22	-0.8
5,017,004	-		GFF5025	0.23	+1.0
5,017,014	-		GFF5025	0.26	+0.3
5,017,059	+		GFF5025	0.42	+2.1
5,017,072	-		GFF5025	0.47	-0.6
5,017,075	+		GFF5025	0.48	-0.2
5,017,075	+		GFF5025	0.48	+0.5
5,017,083	-		GFF5025	0.50	-1.0
5,017,095	+		GFF5025	0.55	+1.5
5,017,095	+		GFF5025	0.55	-0.0
5,017,107	+		GFF5025	0.59	-0.9
5,017,128	+		GFF5025	0.66	-0.7
5,017,136	-		GFF5025	0.69	+0.5
5,017,136	-		GFF5025	0.69	+0.2
5,017,136	-		GFF5025	0.69	+0.9
5,017,144	+		GFF5025	0.72	+0.3
5,017,146	-		GFF5025	0.72	+1.0
5,017,187	+		GFF5025	0.86	-0.5
5,017,206	+				+0.7
5,017,206	+				+0.8
5,017,206	+				-0.3
5,017,212	+				+0.9
5,017,212	+				+1.3
5,017,214	-				-2.2
5,017,214	-				-0.8
5,017,220	-				-1.8
5,017,220	-				-0.5
5,017,220	-				-0.0
5,017,227	+				-0.8
5,017,236	+				-0.6
5,017,254	-				-2.0
5,017,275	+				-0.7
5,017,275	+				-1.1