Strain Fitness in Sphingobium sp. HT1-2 around GFF4971

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,969,479	+		GFF4970	0.22	+1.7
4,969,479	+		GFF4970	0.22	-1.8
4,969,479	+		GFF4970	0.22	-0.7
4,969,479	+		GFF4970	0.22	-1.2
4,969,481	-		GFF4970	0.22	-2.0
4,969,481	-		GFF4970	0.22	-0.2
4,969,481	-		GFF4970	0.22	-0.2
4,969,481	-		GFF4970	0.22	-0.9
4,969,486	+		GFF4970	0.23	-0.3
4,969,487	-		GFF4970	0.23	-0.7
4,969,487	-		GFF4970	0.23	+0.5
4,969,503	-		GFF4970	0.24	+0.2
4,969,505	+		GFF4970	0.24	-2.1
4,969,505	+		GFF4970	0.24	-0.3
4,969,505	+		GFF4970	0.24	-0.6
4,969,510	+		GFF4970	0.25	-0.2
4,969,513	-		GFF4970	0.25	+1.4
4,969,513	-		GFF4970	0.25	+0.1
4,969,522	-		GFF4970	0.26	-1.9
4,969,655	-		GFF4970	0.37	-0.3
4,969,681	+		GFF4970	0.39	+0.3
4,969,683	+		GFF4970	0.39	-0.3
4,969,687	-		GFF4970	0.39	-0.1
4,969,700	+		GFF4970	0.40	+0.0
4,969,700	+		GFF4970	0.40	-2.1
4,969,700	+		GFF4970	0.40	-1.0
4,969,700	+		GFF4970	0.40	-1.5
4,969,700	+		GFF4970	0.40	-0.2
4,969,700	+		GFF4970	0.40	+1.0
4,969,701	+		GFF4970	0.40	-1.1
4,969,706	+		GFF4970	0.41	-1.8
4,969,706	+		GFF4970	0.41	-2.5
4,969,708	+		GFF4970	0.41	-1.0
4,969,708	+		GFF4970	0.41	-1.1
4,969,708	-		GFF4970	0.41	-0.9
4,969,708	-		GFF4970	0.41	-0.9
4,969,708	-		GFF4970	0.41	+1.2
4,969,708	-		GFF4970	0.41	-1.7
4,969,709	-		GFF4970	0.41	-0.1
4,969,714	-		GFF4970	0.41	+0.3
4,969,714	-		GFF4970	0.41	+0.2
4,969,714	-		GFF4970	0.41	+0.2
4,969,716	-		GFF4970	0.42	-0.8
4,969,716	-		GFF4970	0.42	-0.1
4,969,735	+		GFF4970	0.43	-0.5
4,969,791	+		GFF4970	0.48	-1.5
4,969,791	+		GFF4970	0.48	-1.0
4,969,814	+		GFF4970	0.49	-2.5
4,969,821	+		GFF4970	0.50	-1.2
4,969,822	-		GFF4970	0.50	-1.6
4,969,824	-		GFF4970	0.50	-0.3
4,969,829	-		GFF4970	0.51	+0.7
4,969,829	-		GFF4970	0.51	+0.9
4,969,831	-		GFF4970	0.51	-1.3
4,969,867	-		GFF4970	0.54	-0.9
4,969,890	+		GFF4970	0.56	+0.4
4,969,956	-		GFF4970	0.61	-3.8
4,970,019	-		GFF4970	0.66	+0.7
4,970,027	+		GFF4970	0.67	+1.4
4,970,035	-		GFF4970	0.67	-1.3
4,970,035	-		GFF4970	0.67	-1.3
4,970,073	+		GFF4970	0.70	-1.0
4,970,091	-		GFF4970	0.72	-0.0
4,970,138	-		GFF4970	0.76	-1.6
4,970,143	-		GFF4970	0.76	-0.5
4,970,157	+		GFF4970	0.77	-1.1
4,970,174	+		GFF4970	0.79	+0.4
4,970,184	+		GFF4970	0.79	-0.3
4,970,185	+		GFF4970	0.79	-0.3
4,970,185	+		GFF4970	0.79	+0.3
4,970,193	-		GFF4970	0.80	-0.1
4,970,193	-		GFF4970	0.80	-1.6
4,970,193	-		GFF4970	0.80	-0.3
4,970,193	-		GFF4970	0.80	+0.9
4,970,208	-		GFF4970	0.81	-0.1
4,970,220	-		GFF4970	0.82	-1.5
4,970,221	-		GFF4970	0.82	-0.4
4,970,256	+		GFF4970	0.85	-0.3
4,970,256	+		GFF4970	0.85	+0.5
4,970,256	+		GFF4970	0.85	-0.5
4,970,264	-		GFF4970	0.86	+0.3
4,970,264	-		GFF4970	0.86	-0.2
4,970,264	-		GFF4970	0.86	-0.6
4,970,264	-		GFF4970	0.86	-0.7
4,970,265	-		GFF4970	0.86	+0.4
4,970,274	+		GFF4970	0.87	-0.7
4,970,283	-		GFF4970	0.87	+0.7
4,970,289	+		GFF4970	0.88	-0.2
4,970,297	-		GFF4970	0.89	+0.6
4,970,305	+		GFF4970	0.89	-1.7
4,970,310	+		GFF4970	0.90	-0.6
4,970,310	+		GFF4970	0.90	-1.8
4,970,335	+				+0.5
4,970,340	+				+0.9
4,970,351	+				+0.1
4,970,362	+				-0.3
4,970,365	-				-1.4
4,970,365	-				-0.4
4,970,391	-				+0.6
4,970,434	+				-2.0
4,970,442	+				-0.6
4,970,458	-				-0.5
4,970,460	-				-1.8
4,970,522	+				+0.4
4,970,530	-		GFF4971	0.10	+0.9
4,970,571	-		GFF4971	0.14	+0.6
4,970,571	-		GFF4971	0.14	-0.1
4,970,571	-		GFF4971	0.14	+0.2
4,970,571	-		GFF4971	0.14	+0.1
4,970,576	-		GFF4971	0.15	+0.2
4,970,576	-		GFF4971	0.15	-0.5
4,970,578	+		GFF4971	0.15	+0.2
4,970,581	-		GFF4971	0.15	-1.6
4,970,586	-		GFF4971	0.16	-0.7
4,970,630	+		GFF4971	0.21	-0.2
4,970,630	+		GFF4971	0.21	-2.2
4,970,635	+		GFF4971	0.21	-0.8
4,970,635	+		GFF4971	0.21	-2.3
4,970,635	+		GFF4971	0.21	-1.4
4,970,635	+		GFF4971	0.21	-0.4
4,970,635	+		GFF4971	0.21	+0.0
4,970,635	+		GFF4971	0.21	-0.0
4,970,635	+		GFF4971	0.21	-0.0
4,970,635	+		GFF4971	0.21	-1.3
4,970,635	+		GFF4971	0.21	+0.2
4,970,635	+		GFF4971	0.21	-0.0
4,970,635	+		GFF4971	0.21	+0.3
4,970,635	+		GFF4971	0.21	+0.1
4,970,643	-		GFF4971	0.22	+0.6
4,970,643	-		GFF4971	0.22	-0.7
4,970,643	-		GFF4971	0.22	-0.3
4,970,643	-		GFF4971	0.22	+0.2
4,970,643	-		GFF4971	0.22	-1.0
4,970,643	-		GFF4971	0.22	-2.6
4,970,643	-		GFF4971	0.22	+0.8
4,970,643	-		GFF4971	0.22	-1.1
4,970,663	+		GFF4971	0.24	+0.4
4,970,671	+		GFF4971	0.25	-1.5
4,970,679	+		GFF4971	0.26	+0.3
4,970,684	+		GFF4971	0.26	-0.5
4,970,687	-		GFF4971	0.27	-1.0
4,970,692	-		GFF4971	0.27	-1.2
4,970,692	-		GFF4971	0.27	-1.2
4,970,692	-		GFF4971	0.27	+0.1
4,970,692	-		GFF4971	0.27	+0.4
4,970,692	-		GFF4971	0.27	-2.0
4,970,701	+		GFF4971	0.28	+0.1
4,970,701	+		GFF4971	0.28	-0.9
4,970,706	+		GFF4971	0.29	-0.5
4,970,706	+		GFF4971	0.29	-0.5
4,970,709	-		GFF4971	0.29	+0.4
4,970,711	+		GFF4971	0.29	-0.5
4,970,714	-		GFF4971	0.30	+0.6
4,970,714	-		GFF4971	0.30	-1.5
4,970,714	-		GFF4971	0.30	-1.1
4,970,714	-		GFF4971	0.30	-0.2
4,970,714	-		GFF4971	0.30	+0.2
4,970,725	+		GFF4971	0.31	+0.5
4,970,725	+		GFF4971	0.31	-0.4
4,970,725	+		GFF4971	0.31	+0.3
4,970,725	+		GFF4971	0.31	-0.7
4,970,733	-		GFF4971	0.32	-0.1
4,970,733	-		GFF4971	0.32	-0.4
4,970,733	-		GFF4971	0.32	+0.1
4,970,762	-		GFF4971	0.35	+0.3
4,970,793	-		GFF4971	0.38	+0.9
4,970,811	+		GFF4971	0.40	-2.2
4,970,811	+		GFF4971	0.40	+0.8
4,970,816	+		GFF4971	0.40	-0.1
4,970,819	-		GFF4971	0.41	-0.0
4,970,819	-		GFF4971	0.41	+1.2
4,970,819	-		GFF4971	0.41	+0.8
4,970,837	+		GFF4971	0.43	+0.7
4,970,842	+		GFF4971	0.43	+0.6
4,970,842	+		GFF4971	0.43	-0.2
4,970,842	+		GFF4971	0.43	-2.0
4,970,842	+		GFF4971	0.43	-0.5
4,970,842	+		GFF4971	0.43	-0.0
4,970,842	+		GFF4971	0.43	-2.2
4,970,842	+		GFF4971	0.43	-0.8
4,970,842	+		GFF4971	0.43	-1.2
4,970,842	+		GFF4971	0.43	+0.1
4,970,842	-		GFF4971	0.43	-0.3
4,970,850	-		GFF4971	0.44	-1.8
4,970,850	-		GFF4971	0.44	-0.3
4,970,850	-		GFF4971	0.44	-0.3
4,970,850	-		GFF4971	0.44	-0.0
4,970,850	-		GFF4971	0.44	-0.4
4,970,850	-		GFF4971	0.44	-1.0
4,970,850	-		GFF4971	0.44	-2.3
4,970,850	-		GFF4971	0.44	-0.8
4,970,850	-		GFF4971	0.44	+0.1
4,970,850	-		GFF4971	0.44	-1.0
4,970,850	-		GFF4971	0.44	-0.5
4,970,850	-		GFF4971	0.44	-2.2
4,970,850	-		GFF4971	0.44	-0.0
4,970,850	-		GFF4971	0.44	-0.5
4,970,878	+		GFF4971	0.47	+0.4
4,970,878	+		GFF4971	0.47	+1.6
4,970,878	+		GFF4971	0.47	-0.5
4,970,878	+		GFF4971	0.47	-0.0
4,970,878	+		GFF4971	0.47	+0.3
4,970,878	+		GFF4971	0.47	-1.6
4,970,878	+		GFF4971	0.47	-0.5
4,970,878	+		GFF4971	0.47	+1.1
4,970,878	+		GFF4971	0.47	-0.0
4,970,878	+		GFF4971	0.47	-1.1
4,970,878	+		GFF4971	0.47	-0.4
4,970,878	+		GFF4971	0.47	+0.1
4,970,878	+		GFF4971	0.47	-2.3
4,970,878	+		GFF4971	0.47	-2.3
4,970,878	+		GFF4971	0.47	+0.2
4,970,878	+		GFF4971	0.47	+0.4
4,970,878	+		GFF4971	0.47	-0.0
4,970,879	+		GFF4971	0.47	-0.2
4,970,886	-		GFF4971	0.48	+0.6
4,970,886	-		GFF4971	0.48	-0.2
4,970,886	-		GFF4971	0.48	-0.5
4,970,886	-		GFF4971	0.48	-1.8
4,970,886	-		GFF4971	0.48	-0.9
4,970,886	-		GFF4971	0.48	+0.1
4,970,886	-		GFF4971	0.48	-1.7
4,970,886	-		GFF4971	0.48	-0.2
4,970,886	-		GFF4971	0.48	-1.6
4,970,886	-		GFF4971	0.48	+1.0
4,970,886	-		GFF4971	0.48	-0.4
4,970,886	-		GFF4971	0.48	+1.6
4,970,894	+		GFF4971	0.49	-0.1
4,970,894	+		GFF4971	0.49	-0.7
4,970,902	-		GFF4971	0.49	+1.1
4,970,902	-		GFF4971	0.49	+0.4
4,970,902	-		GFF4971	0.49	-0.1
4,970,902	-		GFF4971	0.49	-0.6
4,970,904	+		GFF4971	0.50	-0.8
4,970,911	-		GFF4971	0.50	-0.6
4,970,925	+		GFF4971	0.52	-0.3
4,970,925	+		GFF4971	0.52	-1.2
4,970,925	+		GFF4971	0.52	+0.1
4,970,933	-		GFF4971	0.53	-0.6
4,970,933	-		GFF4971	0.53	-1.5
4,970,933	-		GFF4971	0.53	-1.1
4,970,933	-		GFF4971	0.53	+0.4
4,970,933	-		GFF4971	0.53	+0.4
4,970,933	-		GFF4971	0.53	-2.0
4,970,933	-		GFF4971	0.53	-2.0
4,970,959	-		GFF4971	0.55	-1.3
4,970,966	+		GFF4971	0.56	-2.0
4,970,966	+		GFF4971	0.56	-0.2
4,970,974	-		GFF4971	0.57	-2.1
4,970,990	-		GFF4971	0.59	-0.6
4,970,990	-		GFF4971	0.59	+0.5
4,970,999	+		GFF4971	0.60	-1.9
4,971,001	-		GFF4971	0.60	-0.9
4,971,015	-		GFF4971	0.61	+0.4
4,971,015	-		GFF4971	0.61	+0.7
4,971,020	+		GFF4971	0.62	-0.1
4,971,032	-		GFF4971	0.63	-0.9
4,971,042	-		GFF4971	0.64	-0.3
4,971,053	+		GFF4971	0.65	-0.8
4,971,053	+		GFF4971	0.65	-1.5
4,971,053	+		GFF4971	0.65	-1.6
4,971,056	-		GFF4971	0.66	-0.0
4,971,061	-		GFF4971	0.66	-1.5
4,971,061	-		GFF4971	0.66	+0.5
4,971,061	-		GFF4971	0.66	-0.2
4,971,061	-		GFF4971	0.66	-0.5
4,971,061	-		GFF4971	0.66	-1.9
4,971,081	-		GFF4971	0.68	-0.9
4,971,098	+		GFF4971	0.70	-2.3
4,971,098	+		GFF4971	0.70	+0.9
4,971,101	+		GFF4971	0.70	+0.3
4,971,103	+		GFF4971	0.71	+0.1
4,971,106	-		GFF4971	0.71	-1.0
4,971,106	-		GFF4971	0.71	+1.1
4,971,106	-		GFF4971	0.71	-2.2
4,971,106	-		GFF4971	0.71	-0.8
4,971,108	+		GFF4971	0.71	-2.5
4,971,108	+		GFF4971	0.71	+1.3
4,971,108	+		GFF4971	0.71	-0.0
4,971,108	+		GFF4971	0.71	-1.2
4,971,108	+		GFF4971	0.71	+1.4
4,971,116	-		GFF4971	0.72	+0.8
4,971,116	-		GFF4971	0.72	-0.8
4,971,116	-		GFF4971	0.72	-0.0
4,971,116	-		GFF4971	0.72	+0.6
4,971,129	-		GFF4971	0.73	+0.5
4,971,143	-		GFF4971	0.75	+1.1
4,971,149	-		GFF4971	0.76	-0.9
4,971,149	-		GFF4971	0.76	+0.7
4,971,153	+		GFF4971	0.76	-1.8
4,971,165	-		GFF4971	0.77	+0.1
4,971,175	+		GFF4971	0.78	-1.6
4,971,186	+		GFF4971	0.79	+0.3
4,971,199	-		GFF4971	0.81	+0.6
4,971,222	+		GFF4971	0.83	-3.1
4,971,222	+		GFF4971	0.83	-0.9
4,971,222	+		GFF4971	0.83	-1.7
4,971,230	-		GFF4971	0.84	-0.3
4,971,230	-		GFF4971	0.84	-0.0
4,971,230	-		GFF4971	0.84	-1.3
4,971,264	+		GFF4971	0.88	-1.3
4,971,264	+		GFF4971	0.88	-1.5
4,971,270	+		GFF4971	0.88	-0.2
4,971,294	+				-0.2
4,971,300	+				+0.6
4,971,300	+				-1.8
4,971,319	+				-0.6
4,971,319	+				-0.3
4,971,322	+				+0.6
4,971,327	-				-1.0
4,971,327	-				-1.4
4,971,327	-				+0.8
4,971,329	+				+0.6
4,971,332	-				-0.8
4,971,334	+				-0.7
4,971,334	+				-0.5
4,971,334	+				-1.3
4,971,335	-				+0.5
4,971,337	-				+0.5
4,971,341	-				+0.3
4,971,342	-				-1.2
4,971,342	-				-0.4
4,971,342	-				+0.9
4,971,342	-				-1.1
4,971,355	+				+0.5
4,971,363	-				-0.0
4,971,365	-				+0.3
4,971,387	-				+0.2
4,971,391	+				-0.5
4,971,429	+				-0.2
4,971,432	-				-0.5
4,971,434	+				-2.0
4,971,434	+				-0.5
4,971,442	-				-1.2
4,971,442	-				-0.8
4,971,442	-				+0.9
4,971,447	-				+0.7
4,971,464	+				-0.4
4,971,469	+				-0.9
4,971,482	+				-2.5
4,971,500	-				-1.3
4,971,514	-				-1.7
4,971,518	-				-0.7
4,971,567	-				-0.8
4,971,576	+				-0.7
4,971,580	-				-0.4
4,971,590	-		GFF4972	0.10	+0.2
4,971,593	-		GFF4972	0.10	-2.9
4,971,596	+		GFF4972	0.10	-1.8
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